Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,132,875 |
T→C |
L360P (CTG→CCG) |
flgE → |
hook protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,132,875 | 0 | T | C | 100.0%
| 551.4
/ NA
| 172 | L360P (CTG→CCG) | flgE | hook protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (63/109); total (63/109) |
Only 100 of 183 total aligned reads displayed.
ACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAA > NC_000913/1132785‑1132964
|
aCAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGGACCCTGACCAACGGTGCGCCgg > 2:3261797/1‑93 (MQ=255)
aCAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCgg > 2:3081681/1‑93 (MQ=255)
cAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGa < 2:5526030/93‑1 (MQ=255)
aaCGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGaa < 1:4166643/93‑1 (MQ=255)
aaCGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGACGGaa > 2:2067238/1‑93 (MQ=255)
aCGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAg < 2:2437897/93‑1 (MQ=255)
aCGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAAATTTGGCACCCTGACCAACGGGGCGCCGGAAg > 1:5421377/1‑93 (MQ=255)
gtctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCg > 2:178070/1‑93 (MQ=255)
gtctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCg > 1:1596337/1‑93 (MQ=255)
gtctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCg > 1:6207242/1‑93 (MQ=255)
tctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCgg > 1:4526759/1‑92 (MQ=255)
tctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGt < 2:3388803/93‑1 (MQ=255)
tctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGt > 1:555092/1‑93 (MQ=255)
ctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTc > 2:5587412/1‑93 (MQ=255)
ctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTc < 1:4893923/93‑1 (MQ=255)
tggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTcc > 1:1962459/1‑93 (MQ=255)
tggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTcc < 2:3320494/93‑1 (MQ=255)
gtctgCGACGCAATTTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCaa < 1:6222088/93‑1 (MQ=255)
gtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCaa < 2:4384806/93‑1 (MQ=255)
tgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCCCCCTGACCAACGGTGCGCCGGAAGCGTCCAACGt < 2:695999/93‑1 (MQ=255)
gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc < 2:1450363/93‑1 (MQ=255)
gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc < 2:5315489/93‑1 (MQ=255)
gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc < 2:1584436/93‑1 (MQ=255)
cGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCg > 1:885719/1‑93 (MQ=255)
gACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGa < 1:3605591/93‑1 (MQ=255)
gACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGa < 1:4469998/93‑1 (MQ=255)
gACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGa < 2:5976888/93‑1 (MQ=255)
aCGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAt < 1:1299513/93‑1 (MQ=255)
cGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAtc > 1:311680/1‑93 (MQ=255)
aaTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCa < 2:1549134/93‑1 (MQ=255)
aaTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCa > 1:2675570/1‑93 (MQ=255)
aTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAg < 2:886450/93‑1 (MQ=255)
aTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAg > 1:747772/1‑93 (MQ=255)
tcttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGt > 2:5631524/1‑93 (MQ=255)
tcttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGt < 2:5960752/93‑1 (MQ=255)
cttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTa < 1:1105906/93‑1 (MQ=255)
ttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTaa > 1:2683530/1‑93 (MQ=255)
tctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTaaa < 1:2171407/93‑1 (MQ=255)
tctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTaaa > 2:1459216/1‑93 (MQ=255)
tctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTaaa < 1:2429147/93‑1 (MQ=255)
tctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTaaa < 1:71677/93‑1 (MQ=255)
ttggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAg < 2:1401207/92‑1 (MQ=255)
tggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGa < 1:108397/93‑1 (MQ=255)
tggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGa > 1:38216/1‑93 (MQ=255)
tggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGa > 1:3722136/1‑93 (MQ=255)
ggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGaa < 1:982540/93‑1 (MQ=255)
ggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGaa > 2:4293096/1‑93 (MQ=255)
gcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAc < 2:4813350/93‑1 (MQ=255)
gcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAc < 2:4173925/93‑1 (MQ=255)
cgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACt < 2:1908292/93‑1 (MQ=255)
cgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACt < 1:2253747/93‑1 (MQ=255)
gtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTg < 1:3791343/93‑1 (MQ=255)
gtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTg > 1:2449236/1‑93 (MQ=255)
gtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTg < 2:4590277/93‑1 (MQ=255)
gggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTgg < 1:1780527/92‑1 (MQ=255)
ggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGt < 2:622200/93‑1 (MQ=255)
gcgcTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTc > 2:600929/1‑93 (MQ=255)
tGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAata < 1:5158294/93‑1 (MQ=255)
gTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAatat < 2:136335/93‑1 (MQ=255)
gTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAatat > 2:4748156/1‑93 (MQ=255)
gTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAatat > 1:5886802/1‑93 (MQ=255)
ttGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATg > 1:4327937/1‑93 (MQ=255)
ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt < 1:4107895/93‑1 (MQ=255)
gggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATc < 2:217787/93‑1 (MQ=255)
gggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATc < 2:298483/93‑1 (MQ=255)
gggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATc < 1:2273255/93‑1 (MQ=255)
ggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCg < 1:2931310/93‑1 (MQ=255)
gACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGt < 1:5914239/93‑1 (MQ=255)
gACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGCAAAGAACTGGTCAATATGATCGt < 1:1451700/93‑1 (MQ=255)
cgggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCa < 2:2030693/93‑1 (MQ=255)
gggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAg > 2:2306115/1‑93 (MQ=255)
gggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAg > 1:5004666/1‑93 (MQ=255)
gggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAg < 2:147820/93‑1 (MQ=255)
gggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAg > 2:4107977/1‑93 (MQ=255)
acgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGt > 1:5755659/1‑93 (MQ=255)
cgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTa > 1:4812509/1‑93 (MQ=255)
gggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTaa > 1:2334273/1‑93 (MQ=255)
gggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTaa < 2:1184961/93‑1 (MQ=255)
ggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGGGCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAAc > 1:4230625/1‑93 (MQ=255)
gaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACt < 2:2552287/93‑1 (MQ=255)
aaaCTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTa < 1:4994406/93‑1 (MQ=255)
aaCTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTAt < 2:6099242/93‑1 (MQ=255)
aaCTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTAt > 2:137118/1‑93 (MQ=255)
cTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCa < 1:5346561/93‑1 (MQ=255)
cTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCa < 1:5483383/93‑1 (MQ=255)
cTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACCGGTCAATATGATCGTTGCCCAGCGTAACTATCa < 1:2287826/93‑1 (MQ=255)
tttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAg < 2:5252852/93‑1 (MQ=255)
tttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAg > 2:4544823/1‑93 (MQ=255)
ttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGt > 2:3721401/1‑93 (MQ=255)
tGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTc < 2:5111718/93‑1 (MQ=255)
cccccTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTaa < 2:3888301/91‑1 (MQ=255)
cACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTaa < 1:6080330/93‑1 (MQ=255)
tGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGccc < 1:1564580/93‑1 (MQ=255)
gACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCa < 2:445604/93‑1 (MQ=255)
ccAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGa < 2:1634026/93‑1 (MQ=255)
cAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGGAACTATCAGTCTAACGCCCATAc > 1:5165745/1‑93 (MQ=255)
aaCGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGAcc > 1:1357670/1‑93 (MQ=255)
aCGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCa < 2:5718200/93‑1 (MQ=255)
aCGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAAAGCCCAGACCa > 1:4686107/1‑93 (MQ=255)
cgcCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCaaaa < 2:5441998/93‑1 (MQ=255)
|
ACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAA > NC_000913/1132785‑1132964
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCA > NC_000913/1132783‑1132968
|
CGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCG > SRR4302533.1129660/1‑94 (MQ=60)
AAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAA < SRR4302533.2457163/94‑1 (MQ=60)
AACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAG < SRR4302533.4191892/94‑1 (MQ=60)
AACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAG < SRR4302533.6196105/94‑1 (MQ=60)
AACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAAATTTGGCACCCTGACCAACGGGGCGCCGGAAG > SRR4302533.5454000/1‑94 (MQ=60)
CGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCG > SRR4302533.1606003/1‑94 (MQ=60)
CGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCG > SRR4302533.6244468/1‑94 (MQ=60)
GTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGT > SRR4302533.558383/1‑94 (MQ=60)
GTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGG > SRR4302533.4554167/1‑94 (MQ=60)
TCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTC > SRR4302533.3773247/1‑94 (MQ=60)
CTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCC > SRR4302533.1974438/1‑94 (MQ=60)
CTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCC > SRR4302533.5156014/1‑94 (MQ=60)
CTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCC > SRR4302533.5030783/1‑94 (MQ=60)
CTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCC < SRR4302533.4923584/94‑1 (MQ=60)
GTCTGCGACGCAATTTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAAC < SRR4302533.6259380/94‑1 (MQ=60)
GTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAAC < SRR4302533.1759171/94‑1 (MQ=60)
TCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACG < SRR4302533.2697660/94‑1 (MQ=60)
TGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTC < SRR4302533.3643416/94‑1 (MQ=60)
GCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCG > SRR4302533.890921/1‑94 (MQ=60)
GACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAT < SRR4302533.3627783/94‑1 (MQ=60)
GACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAT < SRR4302533.6254040/94‑1 (MQ=60)
GACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAT < SRR4302533.4497032/94‑1 (MQ=60)
ACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATC > SRR4302533.313586/1‑94 (MQ=60)
ACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATC < SRR4302533.1307334/94‑1 (MQ=60)
CGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGGCGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGcttt > SRR4302533.1324962/1‑90 (MQ=60)
CAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCA > SRR4302533.5387041/1‑94 (MQ=60)
CAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCA > SRR4302533.2691980/1‑94 (MQ=60)
CAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCA < SRR4302533.423215/94‑1 (MQ=60)
AATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAG < SRR4302533.5455074/94‑1 (MQ=60)
AATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAG > SRR4302533.752174/1‑94 (MQ=60)
AATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAG > SRR4302533.6323953/1‑94 (MQ=60)
AATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAAAGTCGATCTCAG > SRR4302533.760175/1‑94 (MQ=60)
ATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGT < SRR4302533.1927792/94‑1 (MQ=60)
CTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAA < SRR4302533.1112464/94‑1 (MQ=60)
CTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAA > SRR4302533.2699974/1‑94 (MQ=60)
CTTCTGGCCTGGCGCTGTTGGTGACATGCTGGACGGGAAACTTTGGCAGCATAACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAA < SRR4302533.5193611/94‑1 (MQ=53)
TCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAG < SRR4302533.2444164/94‑1 (MQ=60)
TCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAG < SRR4302533.72138/94‑1 (MQ=60)
TCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAG < SRR4302533.2184761/94‑1 (MQ=60)
CTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGA > SRR4302533.38467/1‑94 (MQ=60)
CTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGA > SRR4302533.3744978/1‑94 (MQ=60)
TGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAA < SRR4302533.109082/94‑1 (MQ=60)
GGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAC < SRR4302533.988297/94‑1 (MQ=60)
GGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAC < SRR4302533.1573678/94‑1 (MQ=60)
CGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTG < SRR4302533.2267684/94‑1 (MQ=60)
CGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTG > SRR4302533.2464354/1‑94 (MQ=60)
GTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGG < SRR4302533.3814556/94‑1 (MQ=60)
GGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGT < SRR4302533.1791365/94‑1 (MQ=60)
CGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAA < SRR4302533.2407987/94‑1 (MQ=60)
GCGGTTGGGGACAGCCGGGACGAGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAAT < SRR4302533.5946883/94‑1 (MQ=60)
TGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATAT < SRR4302533.5189432/94‑1 (MQ=60)
TGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATAT > SRR4302533.5922370/1‑94 (MQ=60)
GTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATG > SRR4302533.4354008/1‑94 (MQ=60)
GGTGGGGACAGCCGGGACGGGAAACTTTGGCCCCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATG < SRR4302533.2275807/94‑1 (MQ=60)
TTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGA < SRR4302533.4144589/94‑1 (MQ=60)
TGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAT < SRR4302533.4993690/94‑1 (MQ=60)
GGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATC < SRR4302533.4132871/94‑1 (MQ=60)
GGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCG < SRR4302533.2287325/94‑1 (MQ=60)
GGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGT < SRR4302533.2949238/94‑1 (MQ=60)
GACAGCGGGGACGTGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTT < SRR4302533.1425211/94‑1 (MQ=60)
GACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTT < SRR4302533.5949979/94‑1 (MQ=60)
GACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGCAAAGAACTGGTCAATATGATCGTT < SRR4302533.1460460/94‑1 (MQ=60)
CAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTCC < SRR4302533.5981455/94‑1 (MQ=60)
GCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCC < SRR4302533.903420/94‑1 (MQ=60)
CCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCA > SRR4302533.4852160/1‑94 (MQ=60)
CGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAG > SRR4302533.2658130/1‑94 (MQ=60)
CGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAG > SRR4302533.5034996/1‑94 (MQ=60)
CGGGACGCGAAACTTTGGCACCCTGACCAACGGTACCCCGCAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAG < SRR4302533.3069945/94‑1 (MQ=60)
GGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCG > SRR4302533.2332999/1‑94 (MQ=60)
GACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGT > SRR4302533.5790391/1‑94 (MQ=60)
ACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTA > SRR4302533.4841677/1‑94 (MQ=60)
CGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAA > SRR4302533.2348727/1‑94 (MQ=60)
GGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAAC < SRR4302533.1233918/94‑1 (MQ=60)
GGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGGGCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAAC > SRR4302533.4256198/1‑94 (MQ=60)
GGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACT > SRR4302533.4401833/1‑94 (MQ=60)
GAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTA < SRR4302533.3289189/94‑1 (MQ=60)
AAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTAT < SRR4302533.5024685/94‑1 (MQ=60)
AAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTAT > SRR4302533.5338677/1‑94 (MQ=60)
CTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAG < SRR4302533.5516434/94‑1 (MQ=60)
CTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAG < SRR4302533.2064361/94‑1 (MQ=60)
CTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAG > SRR4302533.5646973/1‑94 (MQ=60)
CTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAG < SRR4302533.5378634/94‑1 (MQ=60)
CTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACCGGTCAATATGATCGTTGCCCAGCGTAACTATCAG < SRR4302533.2301987/94‑1 (MQ=60)
TTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGT < SRR4302533.2198732/94‑1 (MQ=60)
TGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCT > SRR4302533.382531/1‑94 (MQ=60)
GGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTA < SRR4302533.4763530/94‑1 (MQ=60)
CACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAAC < SRR4302533.6117101/94‑1 (MQ=60)
CACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAAC < SRR4302533.4511640/94‑1 (MQ=60)
ACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACG > SRR4302533.4295862/1‑94 (MQ=60)
TGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCA < SRR4302533.1573997/94‑1 (MQ=60)
CCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGGAACTATCAGTCTAACGCCCATAC > SRR4302533.5196938/1‑94 (MQ=60)
CAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACC > SRR4302533.1365830/1‑94 (MQ=60)
CAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACC > SRR4302533.5544404/1‑94 (MQ=60)
AACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAAAGCCCAGACCA > SRR4302533.4714495/1‑94 (MQ=60)
CCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCC < SRR4302533.1776262/94‑1 (MQ=60)
CCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCC > SRR4302533.482665/1‑94 (MQ=60)
CCGGAAGCGTCCAACGTCGATCTCACTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCC < SRR4302533.1059005/94‑1 (MQ=60)
CGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCGGACCATCAAAACCCA < SRR4302533.4537719/94‑1 (MQ=60)
CGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCA > SRR4302533.1574361/1‑94 (MQ=60)
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CGACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAACCCA > NC_000913/1132783‑1132968
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
