Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,150,932	A→G	D32G (GAC→GGC)	acpP →	acyl carrier protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,150,932	0	A	G	100.0%	794.8 / NA	245	D32G (GAC→GGC)	acpP	acyl carrier protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (130/115); total (130/115)

Only 100 of 250 total aligned reads displayed.

GCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGACCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGA  >  NC_000913/1150842‑1151021

gCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGcc                                                                                         >  1:449285/1‑93 (MQ=255)

 cACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCt                                                                                        >  2:4017415/1‑93 (MQ=255)

 cACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCt                                                                                        <  1:3528704/93‑1 (MQ=255)

  aCTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTg                                                                                       >  1:4317369/1‑93 (MQ=255)

  aCTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTg                                                                                       <  1:327985/93‑1 (MQ=255)

   cTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTgg                                                                                      <  1:5170220/93‑1 (MQ=255)

    tATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTggg                                                                                     <  1:1061421/93‑1 (MQ=255)

     aTCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGgc                                                                                    >  2:1851398/1‑93 (MQ=255)

     aTCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGgc                                                                                    >  2:3102820/1‑93 (MQ=255)

     aTCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGgc                                                                                    >  1:3661799/1‑93 (MQ=255)

      tCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGgcg                                                                                   >  1:2932149/1‑93 (MQ=255)

        gaagaaCGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGcgcg                                                                                 >  2:2453960/1‑93 (MQ=255)

        gaagaaCGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGcgcg                                                                                 >  1:2532741/1‑93 (MQ=255)

         aagaaCGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCgg                                                                                >  2:3256526/1‑93 (MQ=255)

          agaaCGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCggg                                                                               >  2:2506706/1‑92 (MQ=255)

          agaaCGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGa                                                                               >  1:2658527/1‑93 (MQ=255)

          agaaCGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGa                                                                               >  1:6155214/1‑93 (MQ=255)

          agaaCGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGa                                                                               <  1:480318/93‑1 (MQ=255)

          agaaCGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGa                                                                               <  2:4841306/93‑1 (MQ=255)

           gaaCGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGAt                                                                              >  2:514034/1‑93 (MQ=255)

           gaaCGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGACTGGGCGCGGAt                                                                              >  2:3617083/1‑93 (MQ=255)

              cgcgTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATtct                                                                           >  2:5073811/1‑93 (MQ=255)

               gcgTTAAGAAAATTATCGGCGAACAGCTGGGCGGTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATtctc                                                                          >  2:3166575/1‑93 (MQ=255)

                cgTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTctct                                                                         <  1:1417953/93‑1 (MQ=255)

                 gTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCtt                                                                        >  2:3059234/1‑93 (MQ=255)

                 gTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTAtt                                                                        <  2:1403013/93‑1 (MQ=255)

                  ttAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTg                                                                       >  2:4755618/1‑93 (MQ=255)

                  ttAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTg                                                                       >  1:4154035/1‑93 (MQ=255)

                   tAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGa                                                                      <  2:4600625/93‑1 (MQ=255)

                    aaGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGac                                                                     <  2:479355/93‑1 (MQ=255)

                    aaGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGac                                                                     >  1:4709744/1‑93 (MQ=255)

                      gAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGacac                                                                   <  2:5285417/93‑1 (MQ=255)

                           ttATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTg                                                              >  2:5521216/1‑93 (MQ=255)

                           ttATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTg                                                              >  2:5736823/1‑93 (MQ=255)

                            tATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGa                                                             <  2:5948291/93‑1 (MQ=255)

                             aTCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAg                                                            <  1:5953634/93‑1 (MQ=255)

                               cGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCt                                                          >  1:2982178/1‑93 (MQ=255)

                                 gCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTgg                                                        <  2:4088941/93‑1 (MQ=255)

                                   gAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTa                                                      >  2:2136617/1‑93 (MQ=255)

                                     aCAGCTGGGCGTTAATCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAAt                                                    <  1:3113605/93‑1 (MQ=255)

                                     aCAGCTGGGCGTTAAGCAGGAAGAAGTTGCCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAAt                                                    <  1:4997342/93‑1 (MQ=255)

                                     aCAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAAt                                                    <  1:386825/93‑1 (MQ=255)

                                     aCAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAAt                                                    <  1:2795331/93‑1 (MQ=255)

                                      cAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATg                                                   <  1:5356304/93‑1 (MQ=255)

                                        gCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGc                                                 >  1:4227516/1‑93 (MQ=255)

                                          tGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGctc                                               <  1:4115679/93‑1 (MQ=255)

                                          tGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGctc                                               <  1:5786110/93‑1 (MQ=255)

                                          tGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGctc                                               <  2:5026141/93‑1 (MQ=255)

                                            ggCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTg                                             <  2:259997/93‑1 (MQ=255)

                                              cGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGga                                           >  2:1290869/1‑93 (MQ=255)

                                               gTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGgaa                                          >  1:5566247/1‑93 (MQ=255)

                                               gTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGgaa                                          >  1:3085943/1‑93 (MQ=255)

                                                ttAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGgaag                                         >  1:1016974/1‑93 (MQ=255)

                                                ttAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGgaag                                         <  1:1264845/93‑1 (MQ=255)

                                                ttAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGgaag                                         >  1:3240115/1‑93 (MQ=255)

                                                ttAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGgaag                                         >  1:4621285/1‑93 (MQ=255)

                                                  aaGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGgaagaa                                       <  2:5188925/93‑1 (MQ=255)

                                                   aGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGaagaag                                      <  2:1383011/93‑1 (MQ=255)

                                                   aGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGaagaag                                      >  2:4474418/1‑93 (MQ=255)

                                                    gCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAagaaga                                     >  1:2404117/1‑93 (MQ=255)

                                                      aGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGt                                   >  1:2751324/1‑93 (MQ=255)

                                                       ggAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGtt                                  >  2:4929048/1‑93 (MQ=255)

                                                        gaagaaGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGttt                                 >  2:850220/1‑93 (MQ=255)

                                                        gaagaaGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGttt                                 >  1:559321/1‑93 (MQ=255)

                                                         aagaagTTACCAACAATGTTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTg                                >  2:6307887/1‑93 (MQ=255)

                                                          agaagTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGa                               >  1:3481812/1‑93 (MQ=255)

                                                           gaagTTCCCAACAATGCTTCTTTCGTTGAAGGCCTGGGCTCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGAt                              <  2:2929309/93‑1 (MQ=255)

                                                             agTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATAc                            <  2:2588876/93‑1 (MQ=255)

                                                              gTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACt                           <  2:6205288/93‑1 (MQ=255)

                                                              gTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACt                           <  2:3818285/93‑1 (MQ=255)

                                                              gTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACt                           <  1:1533887/93‑1 (MQ=255)

                                                               ttACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTg                          >  1:2059847/1‑93 (MQ=255)

                                                               ttACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTg                          >  2:2351636/1‑93 (MQ=255)

                                                                tACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTga                         <  2:5391440/93‑1 (MQ=255)

                                                                 aCCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTgag                        >  2:3122105/1‑93 (MQ=255)

                                                                   caacaaTGCTTCTTTCGTTGAAGGCCTGGGCGCGGGTTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGAt                      >  1:1749807/1‑93 (MQ=255)

                                                                   caacaaTGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGAt                      >  2:1664918/1‑93 (MQ=255)

                                                                   caacaaTGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGAt                      >  1:3729146/1‑93 (MQ=255)

                                                                     acaaTGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACGCCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTc                    <  1:6246739/93‑1 (MQ=255)

                                                                     acaaTGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTc                    >  1:4471533/1‑93 (MQ=255)

                                                                       aaTGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACGCCGTTGAGCTGGTAATGGATCTGGAAGAAGAGTTTGATACTGAGATTCCg                  <  2:1014622/93‑1 (MQ=255)

                                                                        aTGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCgg                 >  1:1861191/1‑93 (MQ=255)

                                                                        aTGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCgg                 >  1:5117246/1‑93 (MQ=255)

                                                                        aTGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGGAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCgg                 >  2:728937/1‑93 (MQ=255)

                                                                         tGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGa                >  2:1993359/1‑93 (MQ=255)

                                                                         tGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCAGGa                >  1:2233274/1‑93 (MQ=255)

                                                                          gCTTCTTTCGTTTAAGGCCTGGGCGCGGATTCTCTTTGCACCGGTGAGCTGGTAATGGCTCTGGGAGAAGAGGTTGATACTGAGATTCCGGAc               >  2:1218493/1‑93 (MQ=255)

                                                                          gCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGAc               <  1:4123782/93‑1 (MQ=255)

                                                                            ttcttGCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACga             <  2:3337094/93‑1 (MQ=255)

                                                                               tttCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACgaaga          <  2:231478/93‑1 (MQ=255)

                                                                               tttCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACgaaga          >  1:618473/1‑93 (MQ=255)

                                                                               tttCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACgaaga          >  2:3468521/1‑93 (MQ=255)

                                                                               tttCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACgaaga          <  2:1097242/93‑1 (MQ=255)

                                                                               tttCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACgaaga          <  1:1180051/93‑1 (MQ=255)

                                                                                ttCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACgaagag         >  2:4278490/1‑92 (MQ=255)

                                                                                ttCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACgaagaa         <  1:841003/93‑1 (MQ=255)

                                                                                    ttGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTg     >  1:1674835/1‑93 (MQ=255)

                                                                                     tGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTga    >  2:289678/1‑93 (MQ=255)

                                                                                      gAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTgag   >  1:4036246/1‑93 (MQ=255)

                                                                                       aaGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTgaga  <  2:5467777/93‑1 (MQ=255)

GCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGACCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGA  >  NC_000913/1150842‑1151021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGACCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAAT  >  NC_000913/1150841‑1151025

AGCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCC                                                                                             <  SRR4302533.5802463/94‑1 (MQ=60)

AGCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCC                                                                                             <  SRR4302533.172287/94‑1 (MQ=60)

AGCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCC                                                                                             >  SRR4302533.451971/1‑94 (MQ=60)

 GCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCT                                                                                            >  SRR4302533.1399175/1‑94 (MQ=60)

 GCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCT                                                                                            <  SRR4302533.3657201/94‑1 (MQ=60)

  CACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTG                                                                                           <  SRR4302533.6209456/94‑1 (MQ=60)

  CACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTG                                                                                           >  SRR4302533.4343368/1‑94 (MQ=60)

  CACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTG                                                                                           <  SRR4302533.3550452/94‑1 (MQ=60)

   ACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGG                                                                                          <  SRR4302533.2072853/94‑1 (MQ=60)

   ACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGG                                                                                          >  SRR4302533.709089/1‑94 (MQ=60)

   ACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGG                                                                                          <  SRR4302533.4634988/94‑1 (MQ=60)

   ACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGG                                                                                          <  SRR4302533.329982/94‑1 (MQ=60)

    CTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGG                                                                                         >  SRR4302533.3813290/1‑94 (MQ=60)

    CTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGG                                                                                         >  SRR4302533.2582340/1‑94 (MQ=60)

    CTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGG                                                                                         <  SRR4302533.5201424/94‑1 (MQ=60)

     TATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGC                                                                                        >  SRR4302533.3684313/1‑94 (MQ=60)

     TATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGC                                                                                        <  SRR4302533.1067658/94‑1 (MQ=60)

     TATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGC                                                                                        >  SRR4302533.921954/1‑94 (MQ=60)

      ATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCG                                                                                       >  SRR4302533.2950081/1‑94 (MQ=60)

        CGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCG                                                                                     >  SRR4302533.2548332/1‑94 (MQ=60)

         GAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGG                                                                                    >  SRR4302533.3594887/1‑94 (MQ=60)

         GAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGG                                                                                    >  SRR4302533.945633/1‑94 (MQ=60)

          AAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGA                                                                                   >  SRR4302533.6192246/1‑94 (MQ=60)

          AAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGA                                                                                   >  SRR4302533.2674858/1‑94 (MQ=60)

           AGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGAT                                                                                  <  SRR4302533.483189/94‑1 (MQ=60)

             AACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTC                                                                                <  SRR4302533.1232900/94‑1 (MQ=60)

             AACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTC                                                                                <  SRR4302533.1788601/94‑1 (MQ=60)

               CGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTC                                                                              >  SRR4302533.5396181/1‑94 (MQ=60)

                GCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCT                                                                             <  SRR4302533.3767271/94‑1 (MQ=60)

                 CGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTT                                                                            <  SRR4302533.1426533/94‑1 (MQ=60)

                 CGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTT                                                                            >  SRR4302533.4665931/1‑94 (MQ=60)

                  GTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTG                                                                           >  SRR4302533.5534688/1‑94 (MQ=60)

                  GTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTG                                                                           <  SRR4302533.6006072/94‑1 (MQ=60)

                  GTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTG                                                                           >  SRR4302533.4179206/1‑94 (MQ=60)

                  GTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTG                                                                           >  SRR4302533.1172120/1‑94 (MQ=60)

                   TTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGA                                                                          <  SRR4302533.5058722/94‑1 (MQ=60)

                   TTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGA                                                                          <  SRR4302533.1717153/94‑1 (MQ=60)

                    TAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGAC                                                                         >  SRR4302533.4738288/1‑94 (MQ=60)

                    TAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGAC                                                                         <  SRR4302533.2804637/94‑1 (MQ=60)

                    TAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGAC                                                                         >  SRR4302533.3315139/1‑94 (MQ=60)

                        AAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCG                                                                     <  SRR4302533.6262609/94‑1 (MQ=60)

                          AATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTT                                                                   <  SRR4302533.5698522/94‑1 (MQ=60)

                              ATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGC                                                               >  SRR4302533.3507681/1‑94 (MQ=60)

                              ATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGC                                                               <  SRR4302533.5989647/94‑1 (MQ=60)

                               TCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCT                                                              >  SRR4302533.3000420/1‑94 (MQ=60)

                                CGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTG                                                             >  SRR4302533.5603117/1‑94 (MQ=60)

                                    GAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAA                                                         >  SRR4302533.5831874/1‑94 (MQ=60)

                                     AACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAAT                                                        <  SRR4302533.6222789/94‑1 (MQ=60)

                                     AACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAAT                                                        <  SRR4302533.3165456/94‑1 (MQ=60)

                                      ACAGCTGGGCGTTAATCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATG                                                       <  SRR4302533.3132752/94‑1 (MQ=60)

                                      ACAGCTGGGCGTTAAGCAGGAAGAAGTTGCCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATG                                                       <  SRR4302533.5027639/94‑1 (MQ=60)

                                      ACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATG                                                       <  SRR4302533.389159/94‑1 (MQ=60)

                                      ACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATG                                                       >  SRR4302533.1624382/1‑94 (MQ=60)

                                      ACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATG                                                       <  SRR4302533.2812523/94‑1 (MQ=60)

                                       CAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGG                                                      <  SRR4302533.5388455/94‑1 (MQ=60)

                                        AGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGC                                                     >  SRR4302533.4253076/1‑94 (MQ=60)

                                        AGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGC                                                     <  SRR4302533.273077/94‑1 (MQ=60)

                                         GCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCT                                                    <  SRR4302533.4282781/94‑1 (MQ=60)

                                          CTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTC                                                   >  SRR4302533.295368/1‑94 (MQ=60)

                                           TGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCT                                                  <  SRR4302533.5821059/94‑1 (MQ=60)

                                           TGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCT                                                  <  SRR4302533.4140684/94‑1 (MQ=60)

                                              GCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGA                                               <  SRR4302533.3458643/94‑1 (MQ=60)

                                               CGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAA                                              >  SRR4302533.5197058/1‑94 (MQ=60)

                                               CGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAA                                              >  SRR4302533.3104915/1‑94 (MQ=60)

                                               CGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAA                                              >  SRR4302533.5599892/1‑94 (MQ=60)

                                                GTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAG                                             >  SRR4302533.3260081/1‑94 (MQ=60)

                                                GTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAG                                             >  SRR4302533.3120748/1‑94 (MQ=60)

                                                GTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAG                                             <  SRR4302533.3086324/94‑1 (MQ=60)

                                                GTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAG                                             >  SRR4302533.1022952/1‑94 (MQ=60)

                                                GTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAG                                             >  SRR4302533.4649293/1‑94 (MQ=60)

                                                 TTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGA                                            <  SRR4302533.1272413/94‑1 (MQ=60)

                                                 TTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGA                                            >  SRR4302533.153310/1‑94 (MQ=60)

                                                    AGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGA                                         >  SRR4302533.2418964/1‑94 (MQ=60)

                                                      CAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGT                                       >  SRR4302533.5642669/1‑94 (MQ=60)

                                                      CAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGT                                       >  SRR4302533.2768194/1‑94 (MQ=60)

                                                       AGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTT                                      >  SRR4302533.1302329/1‑94 (MQ=60)

                                                       AGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTT                                      >  SRR4302533.451362/1‑94 (MQ=60)

                                                       AGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTT                                      >  SRR4302533.1086625/1‑94 (MQ=60)

                                                        GGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTT                                     >  SRR4302533.1580453/1‑94 (MQ=60)

                                                        GGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTT                                     >  SRR4302533.562644/1‑94 (MQ=60)

                                                         GAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTG                                    <  SRR4302533.4144572/94‑1 (MQ=60)

                                                          AAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGA                                   <  SRR4302533.4140265/94‑1 (MQ=60)

                                                          AAGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGA                                   >  SRR4302533.3503290/1‑94 (MQ=60)

                                                           AGAAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGAT                                  <  SRR4302533.4127741/94‑1 (MQ=60)

                                                             AAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATAC                                >  SRR4302533.2466469/1‑94 (MQ=60)

                                                             AAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATAC                                <  SRR4302533.1998722/94‑1 (MQ=60)

                                                             AAGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATAC                                <  SRR4302533.5180603/94‑1 (MQ=60)

                                                              AGTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACT                               <  SRR4302533.2498561/94‑1 (MQ=60)

                                                               GTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTG                              >  SRR4302533.2072547/1‑94 (MQ=60)

                                                               GTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTG                              <  SRR4302533.3077804/94‑1 (MQ=60)

                                                               GTTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTG                              <  SRR4302533.1543100/94‑1 (MQ=60)

                                                                TTACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGA                             <  SRR4302533.2892397/94‑1 (MQ=60)

                                                                 TACCAACAATGCTTCTTTCGTTGAAGGCCTGGGTGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAG                            <  SRR4302533.4657981/94‑1 (MQ=60)

                                                                 TACCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAG                            <  SRR4302533.2937431/94‑1 (MQ=60)

                                                                   CCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGGTTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGAT                          >  SRR4302533.1760462/1‑94 (MQ=60)

                                                                   CCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGAT                          <  SRR4302533.4280688/94‑1 (MQ=60)

                                                                   CCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGAT                          <  SRR4302533.2680199/94‑1 (MQ=60)

                                                                   CCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGAT                          >  SRR4302533.397889/1‑94 (MQ=60)

                                                                   CCAACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGAT                          >  SRR4302533.3752023/1‑94 (MQ=60)

                                                                     AACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTC                        <  SRR4302533.4888893/94‑1 (MQ=60)

                                                                     AACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTC                        >  SRR4302533.4498577/1‑94 (MQ=60)

                                                                      ACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACGCCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCC                       <  SRR4302533.6284123/94‑1 (MQ=60)

                                                                      ACAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCC                       >  SRR4302533.2194471/1‑94 (MQ=60)

                                                                       CAATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCG                      >  SRR4302533.1782247/1‑94 (MQ=60)

                                                                        AATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGG                     >  SRR4302533.1872539/1‑94 (MQ=60)

                                                                        AATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGG                     >  SRR4302533.4771239/1‑94 (MQ=60)

                                                                        AATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGG                     >  SRR4302533.3211636/1‑94 (MQ=60)

                                                                        AATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGG                     >  SRR4302533.4168137/1‑94 (MQ=60)

                                                                        AATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGG                     >  SRR4302533.5148170/1‑94 (MQ=60)

                                                                         ATGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCAGGA                    >  SRR4302533.2247056/1‑94 (MQ=60)

                                                                          TGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGAC                   >  SRR4302533.1050590/1‑94 (MQ=60)

                                                                          TGCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGAC                   >  SRR4302533.4501502/1‑94 (MQ=60)

                                                                           GCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACG                  <  SRR4302533.4148818/94‑1 (MQ=60)

                                                                           GCTTCTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACG                  <  SRR4302533.4148819/94‑1 (MQ=60)

                                                                               CTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGA              <  SRR4302533.3696403/94‑1 (MQ=60)

                                                                               CTTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGA              >  SRR4302533.622103/1‑94 (MQ=60)

                                                                                TTTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAA             <  SRR4302533.1187139/94‑1 (MQ=60)

                                                                                 TTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAG            <  SRR4302533.4844244/94‑1 (MQ=60)

                                                                                 TTCGTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAG            <  SRR4302533.845921/94‑1 (MQ=60)

                                                                                    GTTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTG         >  SRR4302533.1684976/1‑94 (MQ=60)

                                                                                     TTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGA        <  SRR4302533.6041270/94‑1 (MQ=60)

                                                                                     TTGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGA        <  SRR4302533.2272414/94‑1 (MQ=60)

                                                                                      TGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAG       >  SRR4302533.4060813/1‑94 (MQ=60)

                                                                                      TGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAG       >  SRR4302533.5240719/1‑94 (MQ=60)

                                                                                      TGAAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAG       >  SRR4302533.439510/1‑94 (MQ=60)

                                                                                        AAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAA     <  SRR4302533.42116/94‑1 (MQ=60)

                                                                                        AAGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAA     <  SRR4302533.3267122/94‑1 (MQ=60)

                                                                                         AGGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAA    >  SRR4302533.5587512/1‑94 (MQ=60)

                                                                                          GGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAA   >  SRR4302533.5146209/1‑94 (MQ=60)

                                                                                          GGCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAA   >  SRR4302533.748086/1‑94 (MQ=60)

                                                                                           GCCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAAT  >  SRR4302533.3867626/1‑94 (MQ=60)

AGCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACAGCTGGGCGTTAAGCAGGAAGAAGTTACCAACAATGCTTCTTTCGTTGAAGACCTGGGCGCGGATTCTCTTGACACCGTTGAGCTGGTAATGGCTCTGGAAGAAGAGTTTGATACTGAGATTCCGGACGAAGAAGCTGAGAAAAT  >  NC_000913/1150841‑1151025

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`