Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,301,617 T→C V232A (GTG→GCG)  oppB → oligopeptide transport permease protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,301,6170TC100.0% 572.4 / NA 181V232A (GTG→GCG) oppBoligopeptide transport permease protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (108/73);  total (108/73)

Only 100 of 190 total aligned reads displayed.

ACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAAC  >  NC_000913/1301527‑1301706
                                                                                          |                                                                                         
  tCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGctc                                                                                       >  2:5254587/1‑93 (MQ=255)
       ttttATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTta                                                                                  <  2:818798/93‑1 (MQ=255)
         ttATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTtata                                                                                <  2:1858893/93‑1 (MQ=255)
         ttATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTtata                                                                                <  1:2322002/93‑1 (MQ=255)
          tATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTatat                                                                               <  2:2130168/93‑1 (MQ=255)
            ttCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATgg                                                                             <  1:3800191/93‑1 (MQ=255)
            ttCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATgg                                                                             >  1:1452571/1‑93 (MQ=255)
             tCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATggg                                                                            >  1:2677698/1‑93 (MQ=255)
                tACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGccc                                                                         >  2:236966/1‑93 (MQ=255)
                  cTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCg                                                                       >  1:551978/1‑93 (MQ=255)
                   tGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGc                                                                      >  2:1045843/1‑93 (MQ=255)
                     cccGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCAt                                                                    >  1:3104551/1‑93 (MQ=255)
                      ccGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCAtt                                                                   >  2:6115877/1‑93 (MQ=255)
                       cGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCAttt                                                                  <  1:6052792/93‑1 (MQ=255)
                       cGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCACGCAttt                                                                  >  1:4570832/1‑93 (MQ=255)
                         ggCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGt                                                                >  2:2000037/1‑93 (MQ=255)
                         ggCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGt                                                                >  2:339553/1‑93 (MQ=255)
                           cGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCg                                                              <  2:4732823/93‑1 (MQ=255)
                           cGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCg                                                              >  1:2057384/1‑93 (MQ=255)
                             aaaGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGc                                                            >  1:2571854/1‑93 (MQ=255)
                             aaaGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGc                                                            >  2:3174639/1‑93 (MQ=255)
                             aaaGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGc                                                            >  1:2000530/1‑93 (MQ=255)
                             aaaGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGc                                                            >  2:3914675/1‑93 (MQ=255)
                              aaGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCa                                                           >  1:4113178/1‑93 (MQ=255)
                              aaGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCa                                                           >  1:3327918/1‑93 (MQ=255)
                                gggTTACCTATGCGGCGGGTCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGAGCCCCGCATTTGTCGGCatt                                                         >  1:4200033/1‑93 (MQ=255)
                                 ggTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCatta                                                        <  1:4577844/93‑1 (MQ=255)
                                  gTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCattat                                                       >  2:2778854/1‑93 (MQ=255)
                                  gTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCattat                                                       <  2:4197734/93‑1 (MQ=255)
                                   ttACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCattatt                                                      <  1:5780952/93‑1 (MQ=255)
                                    tACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTAATCGCGCTCTCTTATATTGGTCCCGCGTTTGTCGGCAttatta                                                     >  2:2228769/1‑93 (MQ=255)
                                     aCCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTAc                                                    >  1:4511998/1‑93 (MQ=255)
                                      ccTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTAcc                                                   >  1:4615586/1‑93 (MQ=255)
                                      ccTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTAcc                                                   <  2:4634087/93‑1 (MQ=255)
                                      ccTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTAcc                                                   <  2:6247123/93‑1 (MQ=255)
                                        tATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCgg                                                 <  2:3097426/93‑1 (MQ=255)
                                        tATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCgg                                                 >  2:5872800/1‑93 (MQ=255)
                                        tATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCgg                                                 >  2:747156/1‑93 (MQ=255)
                                        tATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCgg                                                 >  1:1270128/1‑93 (MQ=255)
                                         aTGCGGCGTATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGt                                                >  2:6148660/1‑93 (MQ=255)
                                         aTGCGGCGGATCATTTTACGTCACGCATTAAATCCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGt                                                <  1:3789702/93‑1 (MQ=255)
                                         aTGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGt                                                <  2:2204674/93‑1 (MQ=255)
                                          tGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGtt                                               >  1:3191214/1‑93 (MQ=255)
                                           gcggcgGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTc                                              <  1:4395759/93‑1 (MQ=255)
                                           gcggcgGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTc                                              <  2:1701257/93‑1 (MQ=255)
                                           gcggcgGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTc                                              <  1:2993711/93‑1 (MQ=255)
                                           gcggcgGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTc                                              <  1:5311243/93‑1 (MQ=255)
                                            cggcggATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCt                                             <  1:5690508/93‑1 (MQ=255)
                                             ggcggATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATTGGGCCCGCCTTTGTCGGCATTATTACCCGTTCTa                                            >  2:3309578/1‑93 (MQ=255)
                                              gcggATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATCTGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTAt                                           >  1:3636660/1‑93 (MQ=255)
                                              gcggATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTAt                                           >  1:5125597/1‑93 (MQ=255)
                                               gggATCATTTTACGTCTCGCATTAAACCCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGGCGGCATTATTACCGGTTCTATg                                          <  1:3756751/92‑1 (MQ=255)
                                                 gATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGt                                        >  2:1612613/1‑93 (MQ=255)
                                                   tCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTa                                      <  2:5192709/93‑1 (MQ=255)
                                                   tCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTa                                      <  2:2566903/93‑1 (MQ=255)
                                                    cATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTAt                                     <  2:5371201/93‑1 (MQ=255)
                                                     aTTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATc                                    >  1:1198440/1‑93 (MQ=255)
                                                          aCGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAAc                               >  2:547587/1‑93 (MQ=255)
                                                           cGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAAcc                              >  2:477005/1‑93 (MQ=255)
                                                            gTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCa                             <  1:2131004/93‑1 (MQ=255)
                                                            gTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCa                             >  1:4241170/1‑93 (MQ=255)
                                                            gTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCa                             <  1:497468/93‑1 (MQ=255)
                                                            ctCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCa                             <  1:1336289/92‑1 (MQ=255)
                                                             tCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCAt                            >  1:2084435/1‑93 (MQ=255)
                                                               aCGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCAttt                          <  1:1660029/93‑1 (MQ=255)
                                                               aCGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCAttt                          <  2:500968/93‑1 (MQ=255)
                                                                cGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTa                         >  1:1687539/1‑93 (MQ=255)
                                                                 gCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTAt                        >  1:3399844/1‑93 (MQ=255)
                                                                 gCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTAt                        >  1:1664202/1‑93 (MQ=255)
                                                                 gCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTAt                        <  2:5641499/93‑1 (MQ=255)
                                                                  cATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATg                       <  1:3203391/93‑1 (MQ=255)
                                                                   aTTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATgg                      >  2:722734/1‑93 (MQ=255)
                                                                   aTTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATgg                      <  1:5215164/93‑1 (MQ=255)
                                                                   aTTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATgg                      >  2:5636393/1‑93 (MQ=255)
                                                                   aTTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATgg                      <  2:1526464/93‑1 (MQ=255)
                                                                   aTTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATgg                      <  1:5982893/93‑1 (MQ=255)
                                                                    ttAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGt                     >  1:776647/1‑93 (MQ=255)
                                                                    ttAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGt                     >  2:344291/1‑93 (MQ=255)
                                                                      aaaaCCTGCTCTGTTCCCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGttt                   <  2:2917087/93‑1 (MQ=255)
                                                                      aaaaCCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGttt                   <  1:160587/93‑1 (MQ=255)
                                                                       aaaCCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTg                  <  1:1715533/93‑1 (MQ=255)
                                                                          ccTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCg               >  1:1101585/1‑93 (MQ=255)
                                                                          ccTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCg               >  1:2393880/1‑93 (MQ=255)
                                                                          ccTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGCTATCGAAACCATTTATGGTTTGCCg               >  2:4685210/1‑93 (MQ=255)
                                                                           cTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCgg              <  1:2744066/93‑1 (MQ=255)
                                                                           cTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCgg              <  2:5955002/93‑1 (MQ=255)
                                                                            tGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCggg             >  2:3584389/1‑93 (MQ=255)
                                                                            tGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCggg             >  1:479133/1‑93 (MQ=255)
                                                                              ctctGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGa           <  2:5067673/93‑1 (MQ=255)
                                                                              ctctGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGa           <  1:5469691/93‑1 (MQ=255)
                                                                               tctGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGAt          >  2:5300691/1‑93 (MQ=255)
                                                                               tctGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGAt          >  1:3620621/1‑93 (MQ=255)
                                                                               tctGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGAt          >  1:3523776/1‑93 (MQ=255)
                                                                                ctGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGAtt         >  1:6126938/1‑93 (MQ=255)
                                                                                  gTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTgg       >  2:4655485/1‑93 (MQ=255)
                                                                                  gTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTgg       <  1:2502342/93‑1 (MQ=255)
                                                                                    tACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGAc     >  1:2742814/1‑93 (MQ=255)
                                                                                      cccGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGATATCGAAACCATTTATGGTTTGCCGGGGATTGGACaa   >  1:2609257/1‑93 (MQ=255)
                                                                                       ccGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAAc  <  1:4051363/93‑1 (MQ=255)
                                                                                       ccGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAAc  >  2:4415700/1‑93 (MQ=255)
                                                                                          |                                                                                         
ACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAAC  >  NC_000913/1301527‑1301706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTT  >  NC_000913/1301524‑1301710
                                                                                             |                                                                                             
TACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGC                                                                                               >  SRR4302533.2744473/1‑94 (MQ=60)
TACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGC                                                                                               >  SRR4302533.4694929/1‑94 (MQ=60)
 ACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCG                                                                                              >  SRR4302533.3872813/1‑94 (MQ=60)
  CACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGC                                                                                             <  SRR4302533.2764010/94‑1 (MQ=60)
  CACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGC                                                                                             <  SRR4302533.3746140/94‑1 (MQ=60)
    CTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTC                                                                                           >  SRR4302533.5138759/1‑94 (MQ=60)
    CTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTC                                                                                           >  SRR4302533.6069379/1‑94 (MQ=60)
     TCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCT                                                                                          >  SRR4302533.6111497/1‑94 (MQ=60)
            TTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATAT                                                                                   <  SRR4302533.2336374/94‑1 (MQ=60)
            TTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATAT                                                                                   <  SRR4302533.2116035/94‑1 (MQ=60)
              ATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGG                                                                                 >  SRR4302533.1461335/1‑94 (MQ=60)
               TTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGG                                                                                <  SRR4302533.4708686/94‑1 (MQ=60)
               TTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGG                                                                                <  SRR4302533.3823451/94‑1 (MQ=60)
               TTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGG                                                                                >  SRR4302533.2694114/1‑94 (MQ=60)
                 CGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCC                                                                              <  SRR4302533.1216836/94‑1 (MQ=60)
                  GTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCC                                                                             >  SRR4302533.5680806/1‑94 (MQ=60)
                  GTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCC                                                                             <  SRR4302533.1533826/94‑1 (MQ=60)
                    ACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCG                                                                           >  SRR4302533.555250/1‑94 (MQ=60)
                     CTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGC                                                                          >  SRR4302533.1338540/1‑94 (MQ=60)
                       GCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCAT                                                                        >  SRR4302533.1369966/1‑94 (MQ=60)
                       GCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCAT                                                                        >  SRR4302533.3123635/1‑94 (MQ=60)
                         CCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCACGCATTT                                                                      >  SRR4302533.4598534/1‑94 (MQ=60)
                          CGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTG                                                                     <  SRR4302533.6089451/94‑1 (MQ=60)
                           GGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGT                                                                    >  SRR4302533.3780439/1‑94 (MQ=60)
                           GGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGT                                                                    <  SRR4302533.3212823/94‑1 (MQ=60)
                             GCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCG                                                                  >  SRR4302533.1630973/1‑94 (MQ=60)
                             GCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCG                                                                  >  SRR4302533.2070072/1‑94 (MQ=60)
                              CGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGG                                                                 >  SRR4302533.1909441/1‑94 (MQ=60)
                               GAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGC                                                                >  SRR4302533.2587679/1‑94 (MQ=60)
                               GAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGC                                                                >  SRR4302533.2012845/1‑94 (MQ=60)
                                AAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCA                                                               >  SRR4302533.4138174/1‑94 (MQ=60)
                                AAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCA                                                               >  SRR4302533.3348483/1‑94 (MQ=60)
                                  AGGGTTACCTATGCGGCGGGTCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGAGCCCCGCATTTGTCGGCATT                                                             >  SRR4302533.4225447/1‑94 (MQ=60)
                                  AGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATT                                                             >  SRR4302533.2721686/1‑94 (MQ=60)
                                    GGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTAT                                                           <  SRR4302533.4160447/94‑1 (MQ=60)
                                    GGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTAT                                                           <  SRR4302533.4605590/94‑1 (MQ=60)
                                     GTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATT                                                          <  SRR4302533.5173603/94‑1 (MQ=60)
                                      TTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTA                                                         <  SRR4302533.5815867/94‑1 (MQ=60)
                                       TACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTAC                                                        >  SRR4302533.4539319/1‑94 (MQ=60)
                                        ACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACC                                                       >  SRR4302533.2466452/1‑94 (MQ=60)
                                        ACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACC                                                       >  SRR4302533.4643538/1‑94 (MQ=60)
                                         CCTATGCGGGTGATCATTTTACGTCACTCATTAAAACCTGCTCTGTTCCCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTGCCG                                                      <  SRR4302533.3654963/94‑1 (MQ=60)
                                         CCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCG                                                      >  SRR4302533.4088398/1‑94 (MQ=60)
                                          CTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGG                                                     >  SRR4302533.1277727/1‑94 (MQ=60)
                                            ATGCGGCGGATCATTTTACGTCACGCATTAAATCCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTT                                                   <  SRR4302533.3812907/94‑1 (MQ=60)
                                            ATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTT                                                   >  SRR4302533.3210843/1‑94 (MQ=60)
                                              GCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCT                                                 <  SRR4302533.4422298/94‑1 (MQ=60)
                                              GCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCT                                                 <  SRR4302533.5343071/94‑1 (MQ=60)
                                              GCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCT                                                 <  SRR4302533.3012015/94‑1 (MQ=60)
                                               CGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTA                                                <  SRR4302533.5724876/94‑1 (MQ=60)
                                                GGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATCTGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTAT                                               >  SRR4302533.3659021/1‑94 (MQ=60)
                                                GGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTAT                                               >  SRR4302533.5156561/1‑94 (MQ=60)
                                                  GGGATCATTTTACGTCTCGCATTAAACCCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGGCGGCATTATTACCGGTTCTATGG                                             <  SRR4302533.3779778/94‑1 (MQ=60)
                                                   GGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGT                                            <  SRR4302533.217217/94‑1 (MQ=60)
                                                   GGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGT                                            >  SRR4302533.5981016/1‑94 (MQ=60)
                                                      TCAGTTTACGTCACGCATTAAAACCGGCGCTGTTGCCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTAT                                         <  SRR4302533.3078389/94‑1 (MQ=60)
                                                       CATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATC                                        >  SRR4302533.4619341/1‑94 (MQ=60)
                                                       CATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATC                                        >  SRR4302533.1205640/1‑94 (MQ=60)
                                                        ATTTTACGTCACGCATTACAACCTGCTCTGTTAGCCGCGCTCTCTTATATGGGCCCCGCATTTGTGGGCATTATTACCGGTTCTATGGTTATCG                                       <  SRR4302533.5516574/94‑1 (MQ=60)
                                                         TTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGA                                      <  SRR4302533.2379203/94‑1 (MQ=60)
                                                             ACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACC                                  <  SRR4302533.4357688/94‑1 (MQ=60)
                                                             ACGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACC                                  >  SRR4302533.995756/1‑94 (MQ=60)
                                                              CGTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCA                                 >  SRR4302533.4266782/1‑94 (MQ=60)
                                                               GTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCAT                                >  SRR4302533.2097268/1‑94 (MQ=60)
                                                               GTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCAT                                <  SRR4302533.500432/94‑1 (MQ=60)
                                                               GTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCAT                                <  SRR4302533.2144145/94‑1 (MQ=60)
                                                               CTCACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCAT                                <  SRR4302533.1344307/94‑1 (MQ=60)
                                                                 CACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTT                              >  SRR4302533.3875530/1‑94 (MQ=60)
                                                                  ACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTA                             >  SRR4302533.3549563/1‑94 (MQ=60)
                                                                  ACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTA                             <  SRR4302533.1670067/94‑1 (MQ=60)
                                                                  ACGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTA                             >  SRR4302533.1697766/1‑94 (MQ=60)
                                                                   CGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGCAACCATTTAT                            >  SRR4302533.1671419/1‑94 (MQ=60)
                                                                   CGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTAT                            >  SRR4302533.3420837/1‑94 (MQ=60)
                                                                   CGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTAT                            >  SRR4302533.1674260/1‑94 (MQ=60)
                                                                   CGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTAT                            >  SRR4302533.1684792/1‑94 (MQ=60)
                                                                   CGCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTAT                            <  SRR4302533.2080347/94‑1 (MQ=60)
                                                                    GCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATG                           <  SRR4302533.1718463/94‑1 (MQ=60)
                                                                    GCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATG                           >  SRR4302533.62878/1‑94 (MQ=60)
                                                                    GCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATG                           >  SRR4302533.3149975/1‑94 (MQ=60)
                                                                    GCATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTAGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATG                           <  SRR4302533.4469817/94‑1 (MQ=60)
                                                                     CATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGG                          <  SRR4302533.338184/94‑1 (MQ=60)
                                                                     CATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGG                          <  SRR4302533.3223106/94‑1 (MQ=60)
                                                                      ATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGT                         >  SRR4302533.781213/1‑94 (MQ=60)
                                                                      ATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGT                         <  SRR4302533.6019126/94‑1 (MQ=60)
                                                                      ATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGT                         <  SRR4302533.2945765/94‑1 (MQ=60)
                                                                      ATTAAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGT                         <  SRR4302533.5246565/94‑1 (MQ=60)
                                                                         AAAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTG                      <  SRR4302533.161613/94‑1 (MQ=60)
                                                                          AAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGC                     >  SRR4302533.3338754/1‑94 (MQ=60)
                                                                          AAACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGC                     <  SRR4302533.1725935/94‑1 (MQ=60)
                                                                            ACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCG                   <  SRR4302533.5410685/94‑1 (MQ=60)
                                                                            ACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCG                   >  SRR4302533.1108112/1‑94 (MQ=60)
                                                                            ACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCG                   <  SRR4302533.4579189/94‑1 (MQ=60)
                                                                            ACCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCG                   >  SRR4302533.2408657/1‑94 (MQ=60)
                                                                             CCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGG                  >  SRR4302533.381887/1‑94 (MQ=60)
                                                                             CCTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGG                  >  SRR4302533.5268860/1‑94 (MQ=60)
                                                                              CTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGG                 >  SRR4302533.481996/1‑94 (MQ=60)
                                                                              CTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGG                 >  SRR4302533.2528909/1‑94 (MQ=60)
                                                                              CTGCTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGG                 <  SRR4302533.2760889/94‑1 (MQ=60)
                                                                                 CTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTCTGGTTATCGAAACCATTTATGGTTTGCCGGGGAT              >  SRR4302533.2673222/1‑94 (MQ=60)
                                                                                 CTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGAT              >  SRR4302533.3642898/1‑94 (MQ=60)
                                                                                 CTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGAT              <  SRR4302533.5502656/94‑1 (MQ=60)
                                                                                 CTCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGAT              >  SRR4302533.3545494/1‑94 (MQ=60)
                                                                                  TCTGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATT             >  SRR4302533.6163866/1‑94 (MQ=60)
                                                                                    TGTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGG           <  SRR4302533.306702/94‑1 (MQ=60)
                                                                                     GTTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGA          <  SRR4302533.2517775/94‑1 (MQ=60)
                                                                                      TTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGAC         >  SRR4302533.2759631/1‑94 (MQ=60)
                                                                                      TTACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGAC         <  SRR4302533.3495967/94‑1 (MQ=60)
                                                                                        ACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCCGGGATTGGACAA       >  SRR4302533.2601366/1‑94 (MQ=60)
                                                                                        ACCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGATATCGAAACCATTTATGGTTTGCCGGGGATTGGACAA       >  SRR4302533.2625277/1‑94 (MQ=60)
                                                                                         CCCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAAC      >  SRR4302533.4849599/1‑94 (MQ=60)
                                                                                          CCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACT     >  SRR4302533.3597791/1‑94 (MQ=60)
                                                                                          CCGCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACT     <  SRR4302533.4076040/94‑1 (MQ=60)
                                                                                            GCGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGT   <  SRR4302533.2411831/94‑1 (MQ=60)
                                                                                             CGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCGGGGGTTTGGACGACTGGT  >  SRR4302533.1102950/1‑94 (MQ=60)
                                                                                             CGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTT  >  SRR4302533.4086971/1‑94 (MQ=60)
                                                                                             |                                                                                             
TACACTCCAATTTTATTCGTACTGCCCGGGCGAAAGGGTTACCTATGCGGCGGATCATTTTACGTCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTT  >  NC_000913/1301524‑1301710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑