Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,368,068 |
(T)9→8 |
intergenic (+41/‑172) |
pspE → / → ycjM |
phage shock protein/putative polysaccharide hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,368,060 | 0 | T | . | 98.9%
| 795.3
/ 1.0
| 176 | intergenic (+33/‑180) | pspE/ycjM | phage shock protein/putative polysaccharide hydrolase |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base . (90/84); total (91/85) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.36e-01 |
Only 100 of 207 total aligned reads displayed.
ACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGTTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTT > NC_000913/1367968‑1368147
|
aCCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGt < 2:4539342/93‑1 (MQ=255)
aCCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGt < 1:4082430/93‑1 (MQ=255)
aCCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGt > 2:2473812/1‑93 (MQ=255)
cccACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGtt > 1:2038541/1‑93 (MQ=255)
ccACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGtct > 2:3944704/1‑91 (MQ=255)
cACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGtttt > 1:1526107/1‑93 (MQ=255)
cGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGtttttt < 2:3416175/93‑1 (MQ=255)
gTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGttttttt > 1:5817348/1‑93 (MQ=255)
gTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGttttttt > 2:3003445/1‑93 (MQ=255)
tGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGttttttttc < 1:2556161/93‑2 (MQ=255)
gagaACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGttttttttct < 1:3759949/93‑3 (MQ=255)
gagaACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGttttttttct < 1:2421805/93‑3 (MQ=255)
agaACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGttttttttctg < 1:5284353/93‑4 (MQ=255)
agaACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGttttttttctg < 1:4252392/93‑4 (MQ=255)
gaACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGttttttttctgt < 2:4694091/93‑5 (MQ=255)
aCGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTca < 2:1597490/93‑1 (MQ=255)
aCGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTca > 2:605151/1‑93 (MQ=255)
cGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTcac < 2:5375817/93‑1 (MQ=255)
gCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTcaca > 2:2659235/1‑93 (MQ=255)
gCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTcaca > 2:3647066/1‑93 (MQ=255)
ccGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCacac > 2:1951764/1‑93 (MQ=255)
ccGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCacac > 1:3049509/1‑93 (MQ=255)
cGGTGGCCTGAAAGACATCTCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACAcc > 1:1451053/1‑93 (MQ=255)
cGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACAcc < 1:3801943/93‑1 (MQ=255)
ggTGGCCTGCAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCt < 1:1019377/93‑1 (MQ=255)
ggTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCt > 2:1384906/1‑93 (MQ=255)
tGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTa > 2:3442382/1‑93 (MQ=255)
ggCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTAt > 2:5473659/1‑93 (MQ=255)
gCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTAtt > 1:808853/1‑93 (MQ=255)
gCCTGAAAGACATCGCAATACCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCCCACCTTAtt < 1:1068711/93‑1 (MQ=255)
cTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTa < 1:1570634/93‑1 (MQ=255)
tGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTAc > 1:1797932/1‑93 (MQ=255)
gAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACa < 2:4420607/93‑1 (MQ=255)
aaaGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACAt > 2:4118638/1‑93 (MQ=255)
aaGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATc > 1:1031952/1‑93 (MQ=255)
aaGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATc > 2:4571777/1‑93 (MQ=255)
aaGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATc > 1:3717735/1‑93 (MQ=255)
aaGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATc < 1:3269102/93‑1 (MQ=255)
aaGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATc > 2:6170856/1‑93 (MQ=255)
gACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATccc < 1:3469236/93‑1 (MQ=255)
gACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATccc > 1:3002639/1‑93 (MQ=255)
gACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATccc < 1:1342614/93‑1 (MQ=255)
cATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCa < 1:6304145/93‑1 (MQ=255)
tCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATa > 2:2862156/1‑93 (MQ=255)
gCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGa > 2:4357364/1‑93 (MQ=255)
cAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGat < 2:6168118/93‑1 (MQ=255)
aaTGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGatt > 2:4062420/1‑93 (MQ=255)
aaTGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGatt > 2:5290763/1‑93 (MQ=255)
tGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGattat > 2:5085779/1‑93 (MQ=255)
ccGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTAttt < 2:816902/93‑1 (MQ=255)
cGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTg > 2:2763873/1‑93 (MQ=255)
gAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGc < 2:1798244/93‑1 (MQ=255)
gAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGc > 1:4719432/1‑93 (MQ=255)
aaGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCg > 2:5722608/1‑93 (MQ=255)
aGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGt > 2:3576304/1‑93 (MQ=255)
aGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGt < 1:889009/93‑1 (MQ=255)
aGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGt < 1:3863961/93‑1 (MQ=255)
gTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCa < 1:6263238/93‑1 (MQ=255)
tCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAg > 2:3482754/1‑93 (MQ=255)
tCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAg < 2:3155393/93‑1 (MQ=255)
cAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGc > 2:4600163/1‑93 (MQ=255)
aGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTca > 2:4942488/1‑93 (MQ=255)
gTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTcaca < 2:4768249/93‑1 (MQ=255)
tAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACaaa > 2:5616141/1‑93 (MQ=255)
aaaaGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAAt > 2:1673120/1‑93 (MQ=255)
aTTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCtt > 1:2783924/1‑93 (MQ=255)
ttCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCttt > 2:59791/1‑93 (MQ=255)
ttCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCttt > 2:715450/1‑93 (MQ=255)
tCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCtttt < 2:5359264/93‑1 (MQ=255)
tCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCtttt < 1:2334962/93‑1 (MQ=255)
cccATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACTCCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTc < 2:3803064/92‑1 (MQ=255)
aCCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCCTAGATTATTTTCGTCAGCTCACAAATACGCTTTTTc > 1:3907714/1‑93 (MQ=255)
aCCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTc < 2:658149/93‑1 (MQ=255)
aCCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTc > 2:2017850/1‑93 (MQ=255)
ccATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTcc > 1:2692337/1‑93 (MQ=255)
ccATGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTcc > 2:4270749/1‑93 (MQ=255)
cATGAGCGGCGCTGATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTccc < 1:2912008/93‑1 (MQ=255)
aTGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTTTTTGCGTCAGCTCACAAATACGCTTTTTCCCt > 1:4478280/1‑93 (MQ=255)
aTGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCt > 1:4530828/1‑93 (MQ=255)
aTGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCt < 2:3086717/93‑1 (MQ=255)
tGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTg > 2:311271/1‑93 (MQ=255)
tGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTg < 2:5393826/93‑1 (MQ=255)
tGAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTg < 1:5579603/93‑1 (MQ=255)
gAGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTgg > 1:6139245/1‑93 (MQ=255)
aGCGGCGCTTATGCGCCGTTTTTTTTTTTTTTCCCCCTTTTTTTCATTCCCATAGAATATTTTCGTCAACTCACAAATAAGCCTTTTTCCttg > 2:320489/1‑91 (MQ=255)
aGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGt < 2:1072860/93‑1 (MQ=255)
aGCGGCGCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGt < 1:1699637/93‑1 (MQ=255)
gcggcgCTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTa < 2:23275/93‑1 (MQ=255)
cgcTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTaaaaa > 1:561419/1‑93 (MQ=255)
gcTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTTCCTGGTaaaaca > 1:4825362/1‑91 (MQ=255)
gcTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTaaaaaa < 1:3988537/93‑1 (MQ=255)
gcTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTaaaaaa < 1:935535/93‑1 (MQ=255)
gcTTATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTaaaaaa > 2:2273881/1‑93 (MQ=255)
tATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGa > 2:2084747/1‑93 (MQ=255)
tATGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGa > 1:718396/1‑93 (MQ=255)
tATGCGCC‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGa < 1:1464937/93‑1 (MQ=255)
aTGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGAt > 1:2665995/1‑93 (MQ=255)
aTGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGAt > 1:4951249/1‑93 (MQ=255)
aTGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGAt < 1:5884724/93‑1 (MQ=255)
aTGCGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGAt < 2:4919114/93‑1 (MQ=255)
|
ACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGTTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTT > NC_000913/1367968‑1368147
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCGTTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAA > NC_000913/1367977‑1368161
|
GAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTG < SRR4302533.2436755/94‑1 (MQ=60)
GAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTG < SRR4302533.3782998/94‑1 (MQ=60)
AGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGT < SRR4302533.5316009/94‑1 (MQ=60)
AGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGT < SRR4302533.4278040/94‑1 (MQ=60)
GAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTC < SRR4302533.3870832/94‑1 (MQ=60)
AACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCA > SRR4302533.301558/1‑94 (MQ=60)
ACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCAC < SRR4302533.5037629/94‑1 (MQ=60)
GCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACAC > SRR4302533.3068173/1‑94 (MQ=60)
CCGGTGGCCTGAAAGACATCTCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACC > SRR4302533.1459808/1‑94 (MQ=60)
CGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCT < SRR4302533.3825211/94‑1 (MQ=60)
GGTGGCCTGCAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTT < SRR4302533.1025368/94‑1 (MQ=60)
TGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTAT < SRR4302533.3790633/94‑1 (MQ=60)
GGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATT > SRR4302533.813603/1‑94 (MQ=60)
GCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTT < SRR4302533.4867380/94‑1 (MQ=60)
GCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTT < SRR4302533.1986412/94‑1 (MQ=60)
GCCTGAAAGACATCGCAATACCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCCCACCTTATTT < SRR4302533.1075003/94‑1 (MQ=60)
CTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTAC < SRR4302533.1580096/94‑1 (MQ=60)
CTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTAC > SRR4302533.1808872/1‑94 (MQ=60)
CTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTAC > SRR4302533.1047640/1‑94 (MQ=60)
CTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTAC < SRR4302533.2627479/94‑1 (MQ=60)
AAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATC > SRR4302533.1038020/1‑94 (MQ=60)
AAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATC > SRR4302533.3740554/1‑94 (MQ=60)
AAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATC > SRR4302533.3531552/1‑94 (MQ=60)
AAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCC < SRR4302533.3289269/94‑1 (MQ=60)
AAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCC < SRR4302533.2915358/94‑1 (MQ=60)
AGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCC > SRR4302533.3021001/1‑94 (MQ=60)
GACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCC < SRR4302533.1350698/94‑1 (MQ=60)
GACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCC < SRR4302533.3908492/94‑1 (MQ=60)
GACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCC < SRR4302533.3490653/94‑1 (MQ=60)
CATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCAT < SRR4302533.6341839/94‑1 (MQ=60)
ATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATA > SRR4302533.3770154/1‑94 (MQ=60)
GCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGAT < SRR4302533.1647080/94‑1 (MQ=60)
CCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTG > SRR4302533.4161971/1‑94 (MQ=60)
CCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTG < SRR4302533.772608/94‑1 (MQ=60)
CGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGC > SRR4302533.4748049/1‑94 (MQ=60)
AAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGT > SRR4302533.6180466/1‑94 (MQ=60)
AAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGT > SRR4302533.2693539/1‑94 (MQ=60)
AGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTC < SRR4302533.4525784/94‑1 (MQ=60)
AGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTC < SRR4302533.3887548/94‑1 (MQ=60)
AGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTC < SRR4302533.894230/94‑1 (MQ=60)
AGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTC < SRR4302533.6337014/94‑1 (MQ=60)
GTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAG > SRR4302533.885231/1‑94 (MQ=60)
GTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAG < SRR4302533.6300674/94‑1 (MQ=60)
AAAAGTTAAAAGAAATCACCAGGAGGCGCGCTTATGCCGCGG‑‑TTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTC < SRR4302533.2063043/94‑1 (MQ=59)
AAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCA > SRR4302533.6163264/1‑94 (MQ=60)
GTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAA > SRR4302533.3978819/1‑94 (MQ=60)
TAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAAT < SRR4302533.5723377/94‑1 (MQ=60)
TAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAAT < SRR4302533.1399010/94‑1 (MQ=60)
AAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACATCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATA < SRR4302533.3396785/94‑1 (MQ=60)
AAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATA < SRR4302533.644495/94‑1 (MQ=60)
AAAGAATTCTCCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATAC < SRR4302533.1244136/94‑1 (MQ=60)
AAAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATAC < SRR4302533.4350131/94‑1 (MQ=60)
AAGAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACG < SRR4302533.1560270/94‑1 (MQ=60)
aaagaatcacccataagggaggttaatcggccTTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATAC < SRR4302533.893291/62‑1 (MQ=60)
GAATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCT < SRR4302533.422110/94‑1 (MQ=60)
AATTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTT > SRR4302533.2801026/1‑94 (MQ=60)
TTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCTCAAATACGCTTTT < SRR4302533.3066568/94‑1 (MQ=60)
TTCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTT < SRR4302533.484274/94‑1 (MQ=60)
TCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTT < SRR4302533.471098/94‑1 (MQ=60)
TCACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTT < SRR4302533.2349417/94‑1 (MQ=60)
CACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCCTAGATTATTTTCGTCAGCTCACAAATACGCTTTTTC > SRR4302533.3931580/1‑94 (MQ=60)
ACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCC > SRR4302533.2708837/1‑94 (MQ=60)
ACCATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCC < SRR4302533.2765325/94‑1 (MQ=60)
CATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTTTTTGCGTCAGCTCACAAATACGCTTTTTCCCT > SRR4302533.4505376/1‑94 (MQ=60)
CATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCT > SRR4302533.4081024/1‑94 (MQ=60)
CATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCT < SRR4302533.1467162/94‑1 (MQ=60)
CATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCT > SRR4302533.4558263/1‑94 (MQ=60)
CATGAGCGGCGCTGATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCT < SRR4302533.2929881/94‑1 (MQ=60)
ATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTG < SRR4302533.5615415/94‑1 (MQ=60)
ATGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTG > SRR4302533.5859280/1‑94 (MQ=60)
TGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGG > SRR4302533.6176225/1‑94 (MQ=60)
TGAGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGG < SRR4302533.5613324/94‑1 (MQ=60)
AGCGGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTA < SRR4302533.1709938/94‑1 (MQ=60)
GGCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAA > SRR4302533.1521274/1‑94 (MQ=60)
GCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAA < SRR4302533.71662/94‑1 (MQ=60)
GCGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAA > SRR4302533.564750/1‑94 (MQ=60)
CGCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTTCCTGGTAAAACA > SRR4302533.4854604/1‑94 (MQ=60)
GCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAAT < SRR4302533.941027/94‑1 (MQ=60)
GCTTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAAT < SRR4302533.4012833/94‑1 (MQ=60)
TTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGA > SRR4302533.2568871/1‑94 (MQ=60)
TTATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGA > SRR4302533.722636/1‑94 (MQ=60)
TATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGAT > SRR4302533.4981234/1‑94 (MQ=60)
TATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGAT > SRR4302533.1722926/1‑94 (MQ=60)
TATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGAT > SRR4302533.2682352/1‑94 (MQ=60)
TATG‑CGCC‑TTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGAT < SRR4302533.1473769/94‑1 (MQ=60)
ATG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATT < SRR4302533.5920286/94‑1 (MQ=60)
TG‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTT > SRR4302533.2410705/1‑94 (MQ=60)
G‑CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTC < SRR4302533.920221/94‑1 (MQ=60)
CGCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCC > SRR4302533.4151549/1‑94 (MQ=60)
GCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTGTTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCT > SRR4302533.4470063/1‑94 (MQ=60)
GCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCT > SRR4302533.6154907/1‑94 (MQ=60)
GCCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCT < SRR4302533.259915/94‑1 (MQ=60)
CCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTG < SRR4302533.5482708/94‑1 (MQ=60)
CCG‑TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATGATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTG < SRR4302533.3120011/94‑1 (MQ=60)
cgTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGC > SRR4302533.5534347/3‑94 (MQ=60)
GTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCG > SRR4302533.133602/1‑94 (MQ=60)
TTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGT > SRR4302533.3286510/1‑94 (MQ=60)
TTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGGTCACAAATACGCTCTTTCCCTGGTAAAAAATGATTTCCTGCGTG > SRR4302533.2686896/1‑94 (MQ=60)
TTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTG < SRR4302533.2480764/94‑1 (MQ=60)
TTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGA > SRR4302533.2321185/1‑94 (MQ=60)
TTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACT < SRR4302533.1155437/94‑1 (MQ=60)
TTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACT > SRR4302533.3473051/1‑94 (MQ=60)
TTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAA > SRR4302533.3089237/1‑94 (MQ=60)
TCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAA < SRR4302533.3996585/94‑1 (MQ=60)
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GAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATG‑CGCCGTTTTTTTTTCTGTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCACAAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAA > NC_000913/1367977‑1368161
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
