Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,427,447 A→G A127A (GCA→GCG)  b1372 → putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,427,4470AG100.0% 567.2 / NA 177A127A (GCA→GCG) b1372putative membrane protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (78/99);  total (78/99)

Only 100 of 189 total aligned reads displayed.

GGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAG  >  NC_000913/1427357‑1427535
                                                                                          |                                                                                        
ggaTGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACggcggc                                                                                        <  2:4567294/93‑1 (MQ=255)
ggaTGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACggcggc                                                                                        <  2:4881136/93‑1 (MQ=255)
 gatgatGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGcc                                                                                       >  1:630056/1‑93 (MQ=255)
 gatgatGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGcc                                                                                       <  2:6110687/93‑1 (MQ=255)
 gatgatGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGcc                                                                                       >  2:5116687/1‑93 (MQ=255)
  atgatgCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCcg                                                                                      >  1:5058611/1‑93 (MQ=255)
  atgatgCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCcg                                                                                      <  2:5673137/93‑1 (MQ=255)
  atgatgCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCcg                                                                                      >  2:5902393/1‑93 (MQ=255)
    gatgCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCcgcg                                                                                    >  2:1562263/1‑93 (MQ=255)
     atgCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCga                                                                                   >  1:1375591/1‑93 (MQ=255)
     atgCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCga                                                                                   >  1:1177987/1‑93 (MQ=255)
      tgCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCgaa                                                                                  >  2:5241031/1‑93 (MQ=255)
      tgCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCgaa                                                                                  >  2:3614800/1‑93 (MQ=255)
        cccGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCgaaga                                                                                >  1:4790440/1‑93 (MQ=255)
        cccGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCgaaga                                                                                <  1:5299438/93‑1 (MQ=255)
        cccGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCgaaga                                                                                >  1:2152380/1‑93 (MQ=255)
         ccGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCgaagaa                                                                               >  2:87893/1‑93 (MQ=255)
         ccGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCgaagaa                                                                               <  1:2796570/93‑1 (MQ=255)
         ccGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCgaagaa                                                                               <  2:3471309/93‑1 (MQ=255)
         ccGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCgaagaa                                                                               <  2:3969871/93‑1 (MQ=255)
           gTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGt                                                                             <  2:2652676/93‑1 (MQ=255)
           gTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGt                                                                             <  1:2267012/93‑1 (MQ=255)
            tCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTc                                                                            <  2:2153475/93‑1 (MQ=255)
             ccGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCa                                                                           <  1:6236149/93‑1 (MQ=255)
              cGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGTTGGCACAGAACACGGCGGCCGCGAAGAAGTCAg                                                                          <  2:3118935/93‑1 (MQ=255)
              cGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAg                                                                          >  1:4344281/1‑93 (MQ=255)
              cGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAg                                                                          >  1:2048849/1‑93 (MQ=255)
                 aGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCa                                                                       <  2:4005587/93‑1 (MQ=255)
                   gCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGt                                                                     >  1:1824882/1‑93 (MQ=255)
                     aCTGCGCCGTTTTGAACTGATGGTGGAAGAGTTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGa                                                                   <  1:4844766/93‑1 (MQ=255)
                     aCTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGa                                                                   >  2:1146791/1‑93 (MQ=255)
                     aCTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGa                                                                   <  1:1732111/93‑1 (MQ=255)
                     aCTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGa                                                                   <  2:2391468/93‑1 (MQ=255)
                      cTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACGGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGAt                                                                  <  1:4767992/93‑1 (MQ=255)
                      cTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGAt                                                                  >  1:3821482/1‑93 (MQ=255)
                      cTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGAt                                                                  <  1:5687023/93‑1 (MQ=255)
                      cTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGAt                                                                  >  2:597173/1‑93 (MQ=255)
                      cTGCGCCGTTTTGAACTGATGGGGGAAGAGGTGGCGCGTAACGCGGCCGCGGGGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGAt                                                                  >  1:1884059/1‑93 (MQ=255)
                       tGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATg                                                                 >  2:5281885/1‑93 (MQ=255)
                       tGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATg                                                                 >  2:4186388/1‑93 (MQ=255)
                       tGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATg                                                                 >  2:1458248/1‑93 (MQ=255)
                         cgcCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACAGCGGCCGCGAAGAAGTCAGCCAGTGATGcc                                                               >  2:5003900/1‑93 (MQ=255)
                         cgcCGTTTTGAACTGATGGTGGAAGACGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGcc                                                               <  1:5855978/93‑1 (MQ=255)
                          gcCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCa                                                              <  2:3766954/93‑1 (MQ=255)
                           ccGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAg                                                             >  2:4613918/1‑93 (MQ=255)
                           ccGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAg                                                             <  2:2805893/93‑1 (MQ=255)
                             gTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGca                                                           >  1:3427617/1‑93 (MQ=255)
                             gTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACCGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGca                                                           >  1:1510727/1‑93 (MQ=255)
                              ttttGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGcac                                                          >  2:4960487/1‑93 (MQ=255)
                               tttGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGcaca                                                         >  1:1782936/1‑93 (MQ=255)
                                ttGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGGAGTCAGCCAGTGATGCCAGCACAt                                                        >  2:3695388/1‑93 (MQ=255)
                                ttGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACAt                                                        <  1:1422963/93‑1 (MQ=255)
                                ttGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACAt                                                        <  2:6200249/93‑1 (MQ=255)
                                 tGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATc                                                       <  2:549432/93‑1 (MQ=255)
                                 tGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATc                                                       <  2:1553263/93‑1 (MQ=255)
                                 tGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATc                                                       <  1:4944527/93‑1 (MQ=255)
                                   aaCTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAg                                                     <  2:1492417/93‑1 (MQ=255)
                                      tGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGccc                                                  <  2:5592132/93‑1 (MQ=255)
                                      tGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGccc                                                  >  1:3170734/1‑93 (MQ=255)
                                      tGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGccc                                                  <  1:729984/93‑1 (MQ=255)
                                      tGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGccc                                                  <  2:2321841/93‑1 (MQ=255)
                                        aTGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGt                                                <  1:1755971/93‑1 (MQ=255)
                                         tggtggAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGTCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTg                                               <  1:4433506/93‑1 (MQ=255)
                                         tggtggAAGAGGTGGCGCGTAACGCGTACCCGGGGGCACAGAACACCGCGGCCGCGAAGAAGTCATCCAGTGGTGGCAGTGAATCAGCCCggg                                               >  2:1719854/1‑91 (MQ=255)
                                          ggtggAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGa                                              >  1:4529330/1‑93 (MQ=255)
                                           gtggAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAg                                             <  1:6087144/93‑1 (MQ=255)
                                             ggAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAggc                                           <  1:5060611/93‑1 (MQ=255)
                                             ggAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAggc                                           <  1:984837/93‑1 (MQ=255)
                                              gAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAggcg                                          >  1:4063658/1‑93 (MQ=255)
                                                agagGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAggcggc                                        <  1:911037/93‑1 (MQ=255)
                                                 gagGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCa                                       >  1:1329862/1‑93 (MQ=255)
                                                  agGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCaa                                      <  2:718241/93‑1 (MQ=255)
                                                    gTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAAcc                                    <  2:4748116/93‑1 (MQ=255)
                                                     tGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAAccc                                   <  1:2312425/93‑1 (MQ=255)
                                                      ggCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCa                                  >  2:4108265/1‑93 (MQ=255)
                                                       gcgcGTAACGCGTCGGCGGTGGCACAGAACGCGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCAt                                 <  2:3375113/93‑1 (MQ=255)
                                                       gcgcGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCCACCCAt                                 >  2:3550211/1‑93 (MQ=255)
                                                       gcgcGTAACGCGCCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCAt                                 <  1:6103133/93‑1 (MQ=255)
                                                          cgTATCGCGCCCGCGGTGGCGCAGACAACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCg                              <  1:1631706/93‑1 (MQ=255)
                                                           gTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCgg                             >  1:3082380/1‑93 (MQ=255)
                                                            tAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGc                            <  1:1048095/93‑1 (MQ=255)
                                                             aaCGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCt                           >  1:823435/1‑93 (MQ=255)
                                                             aaCGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCt                           >  2:5441885/1‑93 (MQ=255)
                                                              aCGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTg                          >  2:3794007/1‑93 (MQ=255)
                                                              aCGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTg                          <  2:193331/93‑1 (MQ=255)
                                                               cgcgTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGa                         <  1:3301866/93‑1 (MQ=255)
                                                                gcgTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAt                        >  1:2641029/1‑93 (MQ=255)
                                                                 cgTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAtg                       >  1:2030310/1‑93 (MQ=255)
                                                                 cgTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAtg                       >  2:4677530/1‑93 (MQ=255)
                                                                 cgTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAtg                       <  1:2506657/93‑1 (MQ=255)
                                                                  gTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAtgc                      <  2:2452291/93‑1 (MQ=255)
                                                                  gTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAtgc                      <  2:2467703/93‑1 (MQ=255)
                                                                     cgcgGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAtgctgc                   >  2:1867599/1‑93 (MQ=255)
                                                                      gcgGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCg                  >  1:1348254/1‑93 (MQ=255)
                                                                         gTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGAc               >  1:149756/1‑93 (MQ=255)
                                                                            gCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCa            <  2:4407042/93‑1 (MQ=255)
                                                                                 gAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCAcg       >  1:424464/1‑93 (MQ=255)
                                                                                    cacGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACgcgc    <  2:1771791/93‑1 (MQ=255)
                                                                                     acGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGca   <  2:1202917/93‑1 (MQ=255)
                                                                                     acGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGca   <  1:5986135/93‑1 (MQ=255)
                                                                                          |                                                                                        
GGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAG  >  NC_000913/1427357‑1427535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAGCCAGC  >  NC_000913/1427354‑1427540
                                                                                             |                                                                                             
GGAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCG                                                                                               >  SRR4302533.520949/1‑94 (MQ=60)
GGAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCG                                                                                               >  SRR4302533.5280371/1‑94 (MQ=60)
GGAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCG                                                                                               >  SRR4302533.5346161/1‑94 (MQ=60)
GGAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCG                                                                                               <  SRR4302533.2698268/94‑1 (MQ=60)
GGAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCG                                                                                               <  SRR4302533.1373284/94‑1 (MQ=60)
GGAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCG                                                                                               <  SRR4302533.1397715/94‑1 (MQ=60)
   GGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCC                                                                                            >  SRR4302533.633759/1‑94 (MQ=60)
   GGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCC                                                                                            <  SRR4302533.506169/94‑1 (MQ=60)
    GATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCG                                                                                           >  SRR4302533.5089179/1‑94 (MQ=60)
    GATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCG                                                                                           >  SRR4302533.6139196/1‑94 (MQ=60)
       GATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGA                                                                                        >  SRR4302533.1185059/1‑94 (MQ=60)
       GATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGA                                                                                        >  SRR4302533.1383868/1‑94 (MQ=60)
         TGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAG                                                                                      <  SRR4302533.1550555/94‑1 (MQ=60)
          GCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGA                                                                                     >  SRR4302533.4819461/1‑94 (MQ=60)
          GCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGA                                                                                     >  SRR4302533.2165637/1‑94 (MQ=60)
           CCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAA                                                                                    <  SRR4302533.5331185/94‑1 (MQ=60)
            CCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAG                                                                                   <  SRR4302533.2813768/94‑1 (MQ=60)
             CGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGT                                                                                  <  SRR4302533.959946/94‑1 (MQ=60)
              GTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTC                                                                                 <  SRR4302533.2281035/94‑1 (MQ=60)
                CCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAG                                                                               >  SRR4302533.4370462/1‑94 (MQ=60)
                CCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAG                                                                               <  SRR4302533.6273492/94‑1 (MQ=60)
                CCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAG                                                                               <  SRR4302533.4831510/94‑1 (MQ=60)
                CCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAG                                                                               <  SRR4302533.1804813/94‑1 (MQ=60)
                CCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAG                                                                               >  SRR4302533.2061483/1‑94 (MQ=60)
                 CGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGC                                                                              <  SRR4302533.4054021/94‑1 (MQ=60)
                 CGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGC                                                                              <  SRR4302533.5768107/94‑1 (MQ=60)
                     GGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGT                                                                          >  SRR4302533.1836029/1‑94 (MQ=60)
                     GGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGG                                                                          >  SRR4302533.4566694/1‑94 (MQ=60)
                      GCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTG                                                                         <  SRR4302533.1397698/94‑1 (MQ=60)
                       CACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGA                                                                        >  SRR4302533.1790663/1‑94 (MQ=60)
                        ACTGCGCCGTTTTGAACTGATGGTGGAAGAGTTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGAT                                                                       <  SRR4302533.4874130/94‑1 (MQ=60)
                        ACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGAT                                                                       >  SRR4302533.3844849/1‑94 (MQ=60)
                        ACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGAT                                                                       <  SRR4302533.1742612/94‑1 (MQ=60)
                        ACTGCGCCGTTTTGAACTGATGGGGGAAGAGGTGGCGCGTAACGCGGCCGCGGGGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGAT                                                                       >  SRR4302533.1895565/1‑94 (MQ=60)
                         CTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACGGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATG                                                                      <  SRR4302533.4796895/94‑1 (MQ=60)
                         CTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATG                                                                      <  SRR4302533.5721374/94‑1 (MQ=60)
                            CGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCA                                                                   <  SRR4302533.3172673/94‑1 (MQ=60)
                            CGCCGTTTTGAACTGATGGTGGAAGACGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCA                                                                   <  SRR4302533.5891380/94‑1 (MQ=60)
                              CCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGC                                                                 >  SRR4302533.5438456/1‑94 (MQ=60)
                               CGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCA                                                                >  SRR4302533.3448793/1‑94 (MQ=60)
                               CGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACCGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCA                                                                >  SRR4302533.1519831/1‑94 (MQ=60)
                                 TTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACA                                                              >  SRR4302533.1793783/1‑94 (MQ=60)
                                  TTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACAT                                                             <  SRR4302533.2051753/94‑1 (MQ=60)
                                   TTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATC                                                            <  SRR4302533.1431565/94‑1 (MQ=60)
                                    TGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCA                                                           <  SRR4302533.4974455/94‑1 (MQ=60)
                                    TGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCA                                                           >  SRR4302533.915218/1‑94 (MQ=60)
                                    TGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCA                                                           <  SRR4302533.6328796/94‑1 (MQ=60)
                                    TGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCA                                                           >  SRR4302533.4809976/1‑94 (MQ=60)
                                     GAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAG                                                          <  SRR4302533.5183761/94‑1 (MQ=60)
                                       ACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCC                                                        <  SRR4302533.4462489/94‑1 (MQ=60)
                                        CTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCC                                                       >  SRR4302533.1210146/1‑94 (MQ=60)
                                        CTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCC                                                       >  SRR4302533.3190251/1‑94 (MQ=60)
                                         TGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCG                                                      <  SRR4302533.734288/94‑1 (MQ=60)
                                           ATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTG                                                    <  SRR4302533.1766668/94‑1 (MQ=60)
                                            TGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGTCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGA                                                   <  SRR4302533.4460310/94‑1 (MQ=60)
                                            TGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGA                                                   >  SRR4302533.4556758/1‑94 (MQ=60)
                                            TGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCAAGTGATGCCAGCACATCAGCCCGTGA                                                   <  SRR4302533.3237063/94‑1 (MQ=60)
                                              GTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGG                                                 <  SRR4302533.1445568/94‑1 (MQ=60)
                                              GTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGG                                                 <  SRR4302533.6123943/94‑1 (MQ=60)
                                              GTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGG                                                 <  SRR4302533.2208176/94‑1 (MQ=60)
                                                GGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCG                                               <  SRR4302533.990606/94‑1 (MQ=60)
                                                GGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCG                                               <  SRR4302533.5091191/94‑1 (MQ=60)
                                                GGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCG                                               >  SRR4302533.4088394/1‑94 (MQ=60)
                                                   AGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCA                                            >  SRR4302533.1337840/1‑94 (MQ=60)
                                                   AGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCA                                            <  SRR4302533.916380/94‑1 (MQ=60)
                                                       GTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCC                                        <  SRR4302533.2948424/94‑1 (MQ=60)
                                                        TGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCA                                       <  SRR4302533.2326751/94‑1 (MQ=60)
                                                        GGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCA                                       <  SRR4302533.3323822/94‑1 (MQ=60)
                                                         GGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCAT                                      <  SRR4302533.5975067/94‑1 (MQ=60)
                                                          GCGCGTAACGCGCCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATG                                     <  SRR4302533.6139975/94‑1 (MQ=60)
                                                           CGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGC                                    >  SRR4302533.427173/1‑94 (MQ=60)
                                                           CGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGC                                    >  SRR4302533.6201497/1‑94 (MQ=60)
                                                             CGTATCGCGCCCGCGGTGGCGCAGACAACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGG                                  <  SRR4302533.1641590/94‑1 (MQ=60)
                                                             CGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGG                                  >  SRR4302533.3101290/1‑94 (MQ=60)
                                                              GTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGC                                 >  SRR4302533.1363231/1‑94 (MQ=60)
                                                               TAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCT                                <  SRR4302533.1054255/94‑1 (MQ=60)
                                                               TAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCT                                >  SRR4302533.828266/1‑94 (MQ=60)
                                                                AACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTG                               >  SRR4302533.496806/1‑94 (MQ=60)
                                                                  CGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAT                             <  SRR4302533.209503/94‑1 (MQ=60)
                                                                  CGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAT                             <  SRR4302533.3322254/94‑1 (MQ=60)
                                                                  CGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAT                             >  SRR4302533.2657259/1‑94 (MQ=60)
                                                                   GCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATG                            >  SRR4302533.2042841/1‑94 (MQ=60)
                                                                    CGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGC                           <  SRR4302533.2522110/94‑1 (MQ=60)
                                                                    CGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGC                           <  SRR4302533.2522109/94‑1 (MQ=60)
                                                                     GTCCGCGTTGGCACAGAACACGGAGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCT                          <  SRR4302533.2281240/94‑1 (MQ=60)
                                                                     GTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCT                          <  SRR4302533.3487181/94‑1 (MQ=60)
                                                                        CGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCG                       <  SRR4302533.2716078/94‑1 (MQ=60)
                                                                        CGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCG                       >  SRR4302533.1356368/1‑94 (MQ=60)
                                                                           GGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGAC                    >  SRR4302533.150713/1‑94 (MQ=60)
                                                                                CACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGC               >  SRR4302533.6099425/1‑94 (MQ=60)
                                                                                CACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGC               <  SRR4302533.1945064/94‑1 (MQ=60)
                                                                                  CAGAACGCGGCGGCCGCGAAGAGCTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCAC             <  SRR4302533.1339570/94‑1 (MQ=60)
                                                                                  CAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCAC             <  SRR4302533.747146/94‑1 (MQ=60)
                                                                                  CAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCAC             >  SRR4302533.4390962/1‑94 (MQ=60)
                                                                                   AGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACG            <  SRR4302533.1509695/94‑1 (MQ=60)
                                                                                   AGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACG            >  SRR4302533.427000/1‑94 (MQ=60)
                                                                                    GAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGC           <  SRR4302533.186740/94‑1 (MQ=60)
                                                                                     AACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCGGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCG          <  SRR4302533.1663007/94‑1 (MQ=60)
                                                                                        ACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAG       <  SRR4302533.6022386/94‑1 (MQ=60)
                                                                                            CGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAGCCAG   <  SRR4302533.2639408/94‑1 (MQ=60)
                                                                                             GGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAGCCAGC  >  SRR4302533.6246769/1‑94 (MQ=60)
                                                                                             GGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAGCCAGC  >  SRR4302533.3304895/1‑94 (MQ=60)
                                                                                             GGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAGCCAGC  >  SRR4302533.2253547/1‑94 (MQ=60)
                                                                                             |                                                                                             
GGAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAGCCAGC  >  NC_000913/1427354‑1427540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑