Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,427,447 |
A→G |
A127A (GCA→GCG) |
b1372 → |
putative membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,427,447 | 0 | A | G | 87.4%
| 381.1
/ 43.5
| 166 | A127A (GCA→GCG) | b1372 | putative membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (7/14); new base G (70/75); total (77/89) |
| Fisher's exact test for biased strand distribution p-value = 2.45e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.54e-01 |
Only 100 of 178 total aligned reads displayed.
GGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAGCCAG > NC_000913/1427357‑1427539
|
ggaTGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACggcggc > 2:6971328/1‑93 (MQ=255)
ggaTGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACggcggc < 2:6896160/93‑1 (MQ=255)
gatgatGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGcc < 1:6193203/93‑1 (MQ=255)
gatgatGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGcc < 1:3238098/93‑1 (MQ=255)
tgatgCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCcgc < 2:1773326/93‑1 (MQ=255)
gatgCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCcgcg > 1:3075017/1‑93 (MQ=255)
cccGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCgaaga < 1:4064323/93‑1 (MQ=255)
ccGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCgaagaa < 1:3712136/93‑1 (MQ=255)
cGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGaagaag < 1:6351773/93‑1 (MQ=255)
cGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGaagaag > 2:5427438/1‑93 (MQ=255)
tCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTc > 2:4065559/1‑93 (MQ=255)
tCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTc < 1:10027789/93‑1 (MQ=255)
tCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTc > 1:7016908/1‑93 (MQ=255)
ccGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCTCAGAACACGGCAGTCGCGAAGAAGTCa < 2:1614018/93‑1 (MQ=255)
cGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAg > 2:504865/1‑93 (MQ=255)
cGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAg > 2:8631322/1‑93 (MQ=255)
ggAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGc > 1:2825323/1‑93 (MQ=255)
ggCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGGGGCGCGTAACGCGTCCGCGGGGTCACAGTAAACGGCGGCCGCGAAGAAGCCAGCAAg > 2:718954/1‑93 (MQ=255)
cACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTg < 2:6180217/93‑1 (MQ=255)
tGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGTTGGGACAGAACACGGGGGCGCCGAAGAAGTCAGCCGGtattc > 1:6039485/1‑89 (MQ=255)
gcgcCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGc < 2:6161746/93‑1 (MQ=255)
gcgcCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGc < 1:7295302/93‑1 (MQ=255)
gcgcCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGc > 1:1259337/1‑93 (MQ=255)
gcgcCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGCGATGc > 2:6601222/1‑93 (MQ=255)
gcCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCa > 2:3191128/1‑93 (MQ=255)
gcCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCa < 1:2570201/93‑1 (MQ=255)
cccGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCa < 1:8286488/92‑1 (MQ=255)
cGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGc > 1:7306870/1‑93 (MQ=255)
ttttGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGcac > 2:109191/1‑93 (MQ=255)
ttttGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGcac > 2:7987495/1‑93 (MQ=255)
tttGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGcaca < 1:9759200/93‑1 (MQ=255)
tttGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGcaca < 2:9880847/93‑1 (MQ=255)
ttGAAGCGATGGTGGAAGAGGTGGGGCGTAACGCGTCCGCGGTGGCCCAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACAt < 2:8665485/93‑1 (MQ=255)
ttGAACTGATGGCGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAATTCAGCCAGTGATGCCAGcacac > 2:5616395/1‑92 (MQ=255)
tGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATc < 2:3861174/93‑1 (MQ=255)
cTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTAAGCCAGTGATGCCAGCACATCAGcc > 1:9102302/1‑93 (MQ=255)
tGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGccc < 2:2850890/93‑1 (MQ=255)
tGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGccc > 1:7228480/1‑93 (MQ=255)
tGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGccc > 1:2670610/1‑93 (MQ=255)
gATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCg < 1:1662943/93‑1 (MQ=255)
aTGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGACAGTGATGCCAGCACATCAGCCCGt < 1:2842632/93‑1 (MQ=255)
tggtggAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTg < 2:4985690/93‑1 (MQ=255)
ggtggAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGa < 1:1955650/93‑1 (MQ=255)
ggtggAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGa < 2:4829357/93‑1 (MQ=255)
gtggAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAg < 2:5070244/93‑1 (MQ=255)
gtggAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAg < 1:565203/93‑1 (MQ=255)
ggAAGAGGTGGCGCGTAACGCGTCCGCGCCCGCCCACCACACCGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAggc > 2:6968924/1‑93 (MQ=255)
gAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAggcg > 1:6792477/1‑93 (MQ=255)
gAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAggcg > 2:2078077/1‑93 (MQ=255)
gAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAggcg > 1:8935091/1‑93 (MQ=255)
gAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAggcg < 2:5740800/93‑1 (MQ=255)
aaGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAggcgg < 1:5722474/93‑1 (MQ=255)
gagGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCa > 1:5982196/1‑93 (MQ=255)
agGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGGGGCac > 1:1911355/1‑92 (MQ=255)
tGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAAccc > 2:1529142/1‑93 (MQ=255)
ggCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCa < 2:1423531/93‑1 (MQ=255)
gcgcGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCCACCCAt > 1:6736936/1‑93 (MQ=255)
gcgcGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCAt < 1:9291301/93‑1 (MQ=255)
gcgcGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCAt < 1:7899216/93‑1 (MQ=255)
gcgcGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCAt < 2:8434296/93‑1 (MQ=255)
cgcgTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATg < 1:9538506/93‑1 (MQ=255)
gcgTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGc < 2:9110870/93‑1 (MQ=255)
gcgTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGc > 1:5422444/1‑93 (MQ=255)
cgTAACGCGTCCGCGGTGGCACAGAACCCGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCg < 2:7067326/93‑1 (MQ=255)
gTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCgg < 2:4378373/93‑1 (MQ=255)
gTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCCTGCgg > 1:6073589/1‑93 (MQ=255)
aaCGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCt < 1:24263/93‑1 (MQ=255)
aCGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTg > 1:10028966/1‑93 (MQ=255)
aCGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTg > 1:3420300/1‑93 (MQ=255)
cgcgTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGa < 1:432801/93‑1 (MQ=255)
cgcgTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGa < 1:871018/93‑1 (MQ=255)
cgcgTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGa < 1:5687606/93‑1 (MQ=255)
gcgTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAt < 1:4429104/93‑1 (MQ=255)
cgTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAtg < 1:7755107/93‑1 (MQ=255)
gTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAtgc < 1:1783157/93‑1 (MQ=255)
tCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAtgct > 1:2349720/1‑93 (MQ=255)
ccGCGGTGGCACAGAACTCGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAtgctg < 1:8330970/93‑1 (MQ=255)
cgcgGTGGCACAGAACACGGCTGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAtgctgc < 2:9618459/93‑1 (MQ=255)
cgcgGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAtgctgc < 2:8231994/93‑1 (MQ=255)
gcgGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCg > 2:2734978/1‑93 (MQ=255)
ggTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGa > 2:7241981/1‑93 (MQ=255)
gTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGAc > 2:1150888/1‑93 (MQ=255)
tGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACt > 2:716427/1‑93 (MQ=255)
tGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACt > 1:5777181/1‑93 (MQ=255)
tGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACt < 2:6808195/93‑1 (MQ=255)
tGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACt < 2:6808193/93‑1 (MQ=255)
ggCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTc < 1:3169107/93‑1 (MQ=255)
cacaGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAg > 2:7399999/1‑93 (MQ=255)
cacaGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAg < 2:7757924/93‑1 (MQ=255)
caGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCa > 2:2912127/1‑93 (MQ=255)
aGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCAc > 1:2290065/1‑93 (MQ=255)
gAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCAcg > 2:4618351/1‑93 (MQ=255)
gAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCAcg < 1:4796784/93‑1 (MQ=255)
gAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCAcg > 1:1011708/1‑93 (MQ=255)
gAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCAcg > 2:162432/1‑93 (MQ=255)
aaCACGGCGCCCGCGAAGAAGCCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCAcgc < 1:2949191/93‑1 (MQ=255)
acacGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCAcgcg > 1:8451435/1‑93 (MQ=255)
cacGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACgcgc < 2:9251176/93‑1 (MQ=255)
cAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGcagcca < 1:7365677/93‑1 (MQ=255)
aGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGcagccag > 1:5244614/1‑93 (MQ=255)
|
GGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAGCCAG > NC_000913/1427357‑1427539
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAGCCAG > NC_000913/1427355‑1427539
|
GAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGG < SRR4302540.9708224/94‑1 (MQ=60)
GAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGG < SRR4302540.9569009/94‑1 (MQ=60)
GATGCTGCCCGTCCGGAGGCACTGCGCCGTTTGGAACTGATGGGGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCG < SRR4302540.3273320/94‑1 (MQ=60)
GATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCG < SRR4302540.3273322/94‑1 (MQ=60)
GATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCG < SRR4302540.6262162/94‑1 (MQ=60)
GATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGCCCGCGGTGGCACACACCACGGAAGCCG > SRR4302540.2790333/1‑94 (MQ=60)
TGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCG > SRR4302540.3108749/1‑94 (MQ=60)
CCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAA < SRR4302540.4108137/94‑1 (MQ=60)
cccaCCGGAGTCACTGCCCCGTTTGGAACTGATGGGGGAAGAGGCGGCGCGTAACGCGTCCGCGGTGACACAGAACACGGCAGCCGCGAAGAAG < SRR4302540.7625953/90‑1 (MQ=60)
CCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAG < SRR4302540.3752644/94‑1 (MQ=60)
CGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGT < SRR4302540.6422511/94‑1 (MQ=60)
GTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTC > SRR4302540.7094824/1‑94 (MQ=60)
TCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCA < SRR4302540.10144459/94‑1 (MQ=60)
CCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAG > SRR4302540.6173035/1‑94 (MQ=60)
CGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGC > SRR4302540.2855852/1‑94 (MQ=60)
CGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGC < SRR4302540.4718771/94‑1 (MQ=60)
GAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCA > SRR4302540.3513631/1‑94 (MQ=60)
GGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGG > SRR4302540.7392970/1‑94 (MQ=60)
GCACTGCGCCGTTTTGAACGGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTG < SRR4302540.1520331/94‑1 (MQ=60)
ACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGAT < SRR4302540.3053051/94‑1 (MQ=60)
CTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATG > SRR4302540.8983680/1‑94 (MQ=60)
CTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATG > SRR4302540.9670290/1‑94 (MQ=60)
CTGCGCCGTTTTGAACTGATGGTGGAAGAGGGGGCGCGTAACGCGACCGCGGGGGCACAGAACAAGGGGGCCGCGAAGAAGGCAGCGAGTGATG > SRR4302540.3467640/1‑94 (MQ=60)
TGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGC > SRR4302540.1272256/1‑94 (MQ=60)
TGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGC > SRR4302540.1206878/1‑94 (MQ=60)
GCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCC < SRR4302540.7376719/94‑1 (MQ=60)
GCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAG < SRR4302540.2597915/94‑1 (MQ=60)
CCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAG < SRR4302540.8382728/94‑1 (MQ=60)
CCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGC > SRR4302540.7388443/1‑94 (MQ=60)
GTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGC‑GGCGCGAAGAAGGCAGCCAGGGATGCCcaccaa > SRR4302540.7488302/1‑88 (MQ=60)
TTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACAT < SRR4302540.9873676/94‑1 (MQ=60)
TTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATC < SRR4302540.6702410/94‑1 (MQ=60)
TTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATC < SRR4302540.4932847/94‑1 (MQ=60)
ACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTAAGCCAGTGATGCCAGCACATCAGCC > SRR4302540.9211679/1‑94 (MQ=60)
CTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCC > SRR4302540.7309084/1‑94 (MQ=60)
CTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCC > SRR4302540.2699537/1‑94 (MQ=60)
CTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCC > SRR4302540.7309088/1‑94 (MQ=60)
TGATGGTGGAAGAGGTGGCGCGTAACCCGTCGGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCG < SRR4302540.3780285/94‑1 (MQ=60)
GATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGT < SRR4302540.1681051/94‑1 (MQ=60)
ATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGACAGTGATGCCAGCACATCAGCCCGTG < SRR4302540.2873392/94‑1 (MQ=60)
TGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGA > SRR4302540.8622935/1‑94 (MQ=60)
GGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAG < SRR4302540.1976915/94‑1 (MQ=60)
GTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGG < SRR4302540.571347/94‑1 (MQ=60)
GGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCG > SRR4302540.6867604/1‑94 (MQ=60)
GGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCG > SRR4302540.9039614/1‑94 (MQ=60)
GGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCG < SRR4302540.6902169/94‑1 (MQ=60)
AAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGC < SRR4302540.5785467/94‑1 (MQ=60)
AAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGC < SRR4302540.5785466/94‑1 (MQ=60)
AGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCA > SRR4302540.6048445/1‑94 (MQ=60)
AGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCA > SRR4302540.1943335/1‑94 (MQ=60)
GAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGGGGCAC > SRR4302540.1932237/1‑94 (MQ=60)
AGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAAC > SRR4302540.8520566/1‑94 (MQ=60)
AGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAAC < SRR4302540.6042715/94‑1 (MQ=60)
GGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCCACCCAT > SRR4302540.6811343/1‑94 (MQ=60)
GGCGCGTAACGCGTCCGAGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCAT < SRR4302540.9068111/94‑1 (MQ=60)
GCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATG < SRR4302540.7991358/94‑1 (MQ=60)
GCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATG < SRR4302540.9402335/94‑1 (MQ=60)
CGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGC > SRR4302540.5482074/1‑94 (MQ=60)
CGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGC < SRR4302540.9651395/94‑1 (MQ=60)
CGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCCTGCGG > SRR4302540.6141127/1‑94 (MQ=60)
CGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGG > SRR4302540.6141126/1‑94 (MQ=60)
GTAACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGC > SRR4302540.433543/1‑94 (MQ=60)
AACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTG < SRR4302540.24530/94‑1 (MQ=60)
AACGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTG > SRR4302540.10145641/1‑94 (MQ=60)
AACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTG > SRR4302540.3457504/1‑94 (MQ=60)
CGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAT < SRR4302540.5750214/94‑1 (MQ=60)
CGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAT < SRR4302540.880266/94‑1 (MQ=60)
CGCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGAT < SRR4302540.437378/94‑1 (MQ=60)
GCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATG < SRR4302540.7360984/94‑1 (MQ=60)
GCGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATG < SRR4302540.4477093/94‑1 (MQ=60)
GCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATG < SRR4302540.5432680/94‑1 (MQ=60)
CGTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGC < SRR4302540.7845678/94‑1 (MQ=60)
GTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCT > SRR4302540.2375024/1‑94 (MQ=60)
GTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCT < SRR4302540.1802530/94‑1 (MQ=60)
GTCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCAGTGAGGCGGCAAACCATGCGGCTGATGCT > SRR4302540.5490100/1‑94 (MQ=60)
TCCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTG > SRR4302540.1924364/1‑94 (MQ=60)
CCGCGGTGGCACAGAACTCGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGC < SRR4302540.8427670/94‑1 (MQ=60)
CCGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATCCTGC > SRR4302540.2660529/1‑94 (MQ=60)
CGCGGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCG < SRR4302540.9603406/94‑1 (MQ=60)
CGCGGGGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCG > SRR4302540.2374634/1‑94 (MQ=60)
GGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGAC > SRR4302540.228921/1‑94 (MQ=60)
GGTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGAC < SRR4302540.7897257/94‑1 (MQ=60)
GTGGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACT > SRR4302540.5840998/1‑94 (MQ=60)
GGCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCA < SRR4302540.3203557/94‑1 (MQ=60)
GCACAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAG < SRR4302540.8329139/94‑1 (MQ=60)
CACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGC < SRR4302540.6276848/94‑1 (MQ=60)
CAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCAC > SRR4302540.10110299/1‑94 (MQ=60)
CAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCAC > SRR4302540.754853/1‑94 (MQ=60)
CAGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCAC > SRR4302540.2314704/1‑94 (MQ=60)
AGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACG < SRR4302540.5766549/94‑1 (MQ=60)
AGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACG > SRR4302540.1021967/1‑94 (MQ=60)
AGAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACG < SRR4302540.10157001/94‑1 (MQ=60)
GAACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGC < SRR4302540.4848116/94‑1 (MQ=60)
AACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGaacagcactccttgcccggcgaacccacgcggctgctgctgcgtactcagcagccg > SRR4302540.8549553/1‑38 (MQ=60)
AACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCG > SRR4302540.8549552/1‑94 (MQ=60)
AACACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCG < SRR4302540.2973881/94‑1 (MQ=60)
AACACGGCGCCCGCGAAGAAGCCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCG < SRR4302540.2981645/94‑1 (MQ=60)
CACGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCA > SRR4302540.3201557/1‑94 (MQ=60)
CGGCGGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAGC > SRR4302540.2492240/1‑94 (MQ=60)
CAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAGCCAG < SRR4302540.7447799/94‑1 (MQ=60)
CAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAGCCAG > SRR4302540.5301817/1‑94 (MQ=60)
|
GAGGATGATGCCCGTCCGGAGGCACTGCGCCGTTTTGAACTGATGGTGGAAGAGGTGGCGCGTAACGCGTCCGCGGTGGCACAGAACACGGCAGCCGCGAAGAAGTCAGCCAGTGATGCCAGCACATCAGCCCGTGAGGCGGCAACCCATGCGGCTGATGCTGCGGACTCAGCACGCGCAGCCAG > NC_000913/1427355‑1427539
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
