Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,433,368	T→C	E92E (GAA→GAG)	ynaF ←	putative filament protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,433,368	0	T	C	100.0%	697.1 / NA	216	E92E (GAA→GAG)	ynaF	putative filament protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (111/105); total (111/105)

Only 100 of 219 total aligned reads displayed.

AGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCTTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCTTTCAGG  >  NC_000913/1433278‑1433455

aGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTc                                                                                       <  1:702608/93‑1 (MQ=255)

 gtggtgATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTcc                                                                                      <  1:5247684/93‑1 (MQ=255)

 gtggtgATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTcc                                                                                      >  2:1831664/1‑93 (MQ=255)

      gATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAAc                                                                                 <  1:1174135/93‑1 (MQ=255)

      gATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAAc                                                                                 <  2:1498959/93‑1 (MQ=255)

      gATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAAc                                                                                 >  2:6192437/1‑93 (MQ=255)

        tatCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACAt                                                                               >  2:2334443/1‑93 (MQ=255)

        tatCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACAt                                                                               <  2:5300466/93‑1 (MQ=255)

         atCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATg                                                                              <  2:1682092/93‑1 (MQ=255)

          tCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATgg                                                                             >  2:1992203/1‑93 (MQ=255)

             ggTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACa                                                                          >  2:2870307/1‑93 (MQ=255)

             ggTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACa                                                                          <  2:2916829/93‑1 (MQ=255)

             ggTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACa                                                                          <  1:4077059/93‑1 (MQ=255)

              gTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACAt                                                                         <  1:3495307/93‑1 (MQ=255)

              gTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACAt                                                                         >  1:3063171/1‑93 (MQ=255)

                 gATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCa                                                                      >  1:1799985/1‑93 (MQ=255)

                 gATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCa                                                                      >  1:3900/1‑93 (MQ=255)

                 gATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCa                                                                      >  1:2977855/1‑93 (MQ=255)

                  aTGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCAc                                                                     <  2:6271007/93‑1 (MQ=255)

                  aTGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCAc                                                                     >  1:6013911/1‑93 (MQ=255)

                   tGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCAct                                                                    <  1:446594/93‑1 (MQ=255)

                   tGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCAct                                                                    >  1:1019346/1‑93 (MQ=255)

                   tGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCAct                                                                    >  2:3637721/1‑93 (MQ=255)

                    gggAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCActc                                                                   <  1:3171713/93‑1 (MQ=255)

                    gggAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCActc                                                                   <  2:2057524/93‑1 (MQ=255)

                    gggAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCActc                                                                   <  2:4876211/93‑1 (MQ=255)

                     ggAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCActct                                                                  <  2:3255641/93‑1 (MQ=255)

                     ggAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCActct                                                                  <  2:2253840/93‑1 (MQ=255)

                     ggAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCActct                                                                  <  2:448583/93‑1 (MQ=255)

                      gAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTg                                                                 <  1:3708943/93‑1 (MQ=255)

                       aaGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGt                                                                <  1:3823718/93‑1 (MQ=255)

                        aGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTc                                                               <  1:2243818/93‑1 (MQ=255)

                        aGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTc                                                               >  1:993088/1‑93 (MQ=255)

                         gCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCg                                                              >  2:1752776/1‑93 (MQ=255)

                           agtgaggaTCATATGAGCGGGGATCTTCTTCGCAAATTCCAGAATGCGGTCTTGGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGt                                                            <  2:3235468/91‑1 (MQ=255)

                           aaTGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGt                                                            >  2:2984883/1‑93 (MQ=255)

                            atgatgATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGtt                                                           >  2:2410023/1‑93 (MQ=255)

                            atgatgATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGtt                                                           >  2:253402/1‑93 (MQ=255)

                            atgatgATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGtt                                                           <  1:3300076/93‑1 (MQ=255)

                            atgatgATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGtt                                                           >  2:4309816/1‑93 (MQ=255)

                            atgatgATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGtt                                                           >  2:5408526/1‑93 (MQ=255)

                             tgatgaTCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTg                                                          <  2:1164700/93‑1 (MQ=255)

                             tgatgaTCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTg                                                          >  1:1646810/1‑93 (MQ=255)

                             tgatgaTCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTg                                                          >  1:4723181/1‑93 (MQ=255)

                              gatgatCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTgg                                                         <  1:5060614/93‑1 (MQ=255)

                                tgatCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCa                                                       <  2:5577059/93‑1 (MQ=255)

                                tgatCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCa                                                       >  1:2314824/1‑93 (MQ=255)

                                tgatCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCa                                                       >  2:5254988/1‑93 (MQ=255)

                                 gatCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAg                                                      >  1:2068911/1‑93 (MQ=255)

                                  atCATATGAGCGGGCATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGt                                                     <  1:2402635/93‑1 (MQ=255)

                                   tCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGtt                                                    >  2:4599589/1‑93 (MQ=255)

                                    cATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGttt                                                   <  1:61470/93‑1 (MQ=255)

                                     atatGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTa                                                  >  1:6231969/1‑93 (MQ=255)

                                     atatGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTa                                                  >  2:2137091/1‑93 (MQ=255)

                                      tatGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTaa                                                 >  1:1252015/1‑93 (MQ=255)

                                       atGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTaaa                                                <  1:3127174/93‑1 (MQ=255)

                                        tGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAAt                                               >  1:896084/1‑93 (MQ=255)

                                        tGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAAt                                               <  2:5517748/93‑1 (MQ=255)

                                        tGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAAt                                               <  2:4663399/93‑1 (MQ=255)

                                         gAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAAtt                                              <  1:4236247/93‑1 (MQ=255)

                                            cGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAAttttt                                           <  1:5683443/93‑1 (MQ=255)

                                            cGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAAttttt                                           <  2:4097813/93‑1 (MQ=255)

                                             ggggATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAAtttttt                                          >  2:419896/1‑93 (MQ=255)

                                             ggggATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAAtttttt                                          <  1:1991689/93‑1 (MQ=255)

                                              gggATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTa                                         >  1:3542618/1‑93 (MQ=255)

                                              gggATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTa                                         <  1:2550468/93‑1 (MQ=255)

                                              gggATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTa                                         >  1:5473242/1‑93 (MQ=255)

                                               ggATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTaa                                        <  2:5954518/93‑1 (MQ=255)

                                                 aTCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATg                                      <  1:4191267/93‑1 (MQ=255)

                                                  tcttctTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGa                                     <  1:434211/93‑1 (MQ=255)

                                                  tcttctTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGa                                     <  2:2629982/93‑1 (MQ=255)

                                                  tcttctTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGa                                     <  1:5100338/93‑1 (MQ=255)

                                                    ttcttcGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACGTGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGAtc                                   <  1:4618768/93‑1 (MQ=255)

                                                    ttcttcGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGAtc                                   <  1:387535/93‑1 (MQ=255)

                                                     tcttcGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGAtct                                  <  1:493149/93‑1 (MQ=255)

                                                      cttcGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGAtctc                                 <  1:1697945/93‑1 (MQ=255)

                                                      cttcGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGAtctc                                 <  1:1324887/93‑1 (MQ=255)

                                                      cttcGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGAtctc                                 >  2:3263935/1‑93 (MQ=255)

                                                         cGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTc                              <  2:4339141/93‑1 (MQ=255)

                                                           ccAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCa                            >  1:1454410/1‑93 (MQ=255)

                                                            cAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAg                           >  2:3935113/1‑93 (MQ=255)

                                                             aaTTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGt                          >  1:4042203/1‑93 (MQ=255)

                                                             aaTTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGt                          >  1:439345/1‑93 (MQ=255)

                                                             aaTTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGt                          >  1:2473301/1‑93 (MQ=255)

                                                              aTTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGtt                         >  2:3072944/1‑93 (MQ=255)

                                                               ttCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTg                        <  2:3944386/93‑1 (MQ=255)

                                                               ttCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTg                        >  2:1881444/1‑93 (MQ=255)

                                                                tCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGc                       >  2:1825204/1‑93 (MQ=255)

                                                                      aTGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTg                 >  1:4101204/1‑93 (MQ=255)

                                                                       tGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTgg                >  1:1447161/1‑93 (MQ=255)

                                                                       tGCGGTCTTTGGGCGAGCCCTCCACAACATGGACATGCACTCTGTCCGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTgg                >  2:5075265/1‑93 (MQ=255)

                                                                        gCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGc               <  1:3666450/93‑1 (MQ=255)

                                                                         cGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCt              >  1:4697178/1‑93 (MQ=255)

                                                                          ggTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCtt             >  2:5895192/1‑93 (MQ=255)

                                                                           gTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTc            <  1:6061357/93‑1 (MQ=255)

                                                                            tCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTcc           >  1:5296814/1‑93 (MQ=255)

                                                                               ttGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCt        <  2:4710354/93‑1 (MQ=255)

                                                                               ttGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCt        >  2:727658/1‑93 (MQ=255)

                                                                                tGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCtt       <  1:2675053/93‑1 (MQ=255)

                                                                                     gAGCCCTCCTCAACATGGACATGCACTCTGTCGGCTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCTTTCAgg  >  1:4772695/1‑93 (MQ=255)

AGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCTTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCTTTCAGG  >  NC_000913/1433278‑1433455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATAAGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCTTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCTTTCAGGTCATCC  >  NC_000913/1433275‑1433461

ATAAGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCC                                                                                               >  SRR4302533.5263176/1‑94 (MQ=60)

ATAAGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCC                                                                                               <  SRR4302533.4804540/94‑1 (MQ=60)

   AGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCC                                                                                            <  SRR4302533.706763/94‑1 (MQ=60)

   AGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCC                                                                                            <  SRR4302533.2094793/94‑1 (MQ=60)

    GTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCT                                                                                           <  SRR4302533.5279232/94‑1 (MQ=60)

         GATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACA                                                                                      <  SRR4302533.1181183/94‑1 (MQ=60)

          ATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACAT                                                                                     >  SRR4302533.2143631/1‑94 (MQ=60)

           TATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATG                                                                                    <  SRR4302533.2587533/94‑1 (MQ=60)

            ATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGG                                                                                   >  SRR4302533.716962/1‑94 (MQ=60)

               CGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACA                                                                                <  SRR4302533.3428111/94‑1 (MQ=60)

                GGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACAT                                                                               >  SRR4302533.3081976/1‑94 (MQ=60)

                GGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACAT                                                                               <  SRR4302533.4101877/94‑1 (MQ=60)

                 GTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATG                                                                              <  SRR4302533.3516865/94‑1 (MQ=60)

                  TCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGC                                                                             >  SRR4302533.4224238/1‑94 (MQ=60)

                   CGATGGTAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCGAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCA                                                                            <  SRR4302533.4380844/94‑1 (MQ=60)

                   CGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCA                                                                            >  SRR4302533.2996074/1‑94 (MQ=60)

                   CGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCA                                                                            >  SRR4302533.1810936/1‑94 (MQ=60)

                   CGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCA                                                                            <  SRR4302533.1274883/94‑1 (MQ=60)

                   CGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCA                                                                            >  SRR4302533.3934/1‑94 (MQ=60)

                    GATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCAC                                                                           >  SRR4302533.6050354/1‑94 (MQ=60)

                     ATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACT                                                                          >  SRR4302533.1025337/1‑94 (MQ=60)

                     ATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACT                                                                          <  SRR4302533.3174591/94‑1 (MQ=60)

                     ATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACT                                                                          >  SRR4302533.4756101/1‑94 (MQ=60)

                      TGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTC                                                                         <  SRR4302533.6064485/94‑1 (MQ=60)

                      TGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTC                                                                         <  SRR4302533.449268/94‑1 (MQ=60)

                       GGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCT                                                                        <  SRR4302533.3191236/94‑1 (MQ=60)

                        GGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTG                                                                       >  SRR4302533.156741/1‑94 (MQ=60)

                         GAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGT                                                                      <  SRR4302533.3731724/94‑1 (MQ=60)

                         GAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGT                                                                      <  SRR4302533.952068/94‑1 (MQ=60)

                          AAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTC                                                                     <  SRR4302533.5445993/94‑1 (MQ=60)

                          AAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTC                                                                     <  SRR4302533.3847096/94‑1 (MQ=60)

                          AAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTC                                                                     >  SRR4302533.998893/1‑94 (MQ=60)

                           AGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCG                                                                    <  SRR4302533.2257687/94‑1 (MQ=60)

                             CAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGT                                                                  >  SRR4302533.2766175/1‑94 (MQ=60)

                               ATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTG                                                                >  SRR4302533.4751816/1‑94 (MQ=60)

                               ATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTG                                                                <  SRR4302533.1461346/94‑1 (MQ=60)

                               ATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTG                                                                >  SRR4302533.3865253/1‑94 (MQ=60)

                               ATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTG                                                                <  SRR4302533.2452083/94‑1 (MQ=60)

                               ATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTG                                                                >  SRR4302533.1656783/1‑94 (MQ=60)

                               ATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTG                                                                <  SRR4302533.3320447/94‑1 (MQ=60)

                                TGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGG                                                               <  SRR4302533.5100593/94‑1 (MQ=60)

                                 GATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGC                                                              >  SRR4302533.4745946/1‑94 (MQ=60)

                                 GATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGC                                                              <  SRR4302533.5091194/94‑1 (MQ=60)

                                  ATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCA                                                             >  SRR4302533.2329163/1‑94 (MQ=60)

                                   TGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAG                                                            <  SRR4302533.5194379/94‑1 (MQ=60)

                                   TGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAG                                                            >  SRR4302533.2081654/1‑94 (MQ=60)

                                     ATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTT                                                          >  SRR4302533.6167928/1‑94 (MQ=60)

                                     ATCATATGAGCGGGCATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTT                                                          <  SRR4302533.2417473/94‑1 (MQ=60)

                                       CATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTA                                                        <  SRR4302533.61874/94‑1 (MQ=60)

                                       CATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTA                                                        >  SRR4302533.6269291/1‑94 (MQ=60)

                                        ATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAA                                                       >  SRR4302533.1259497/1‑94 (MQ=60)

                                         TATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAA                                                      >  SRR4302533.1666935/1‑94 (MQ=60)

                                         TATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAA                                                      >  SRR4302533.3121644/1‑94 (MQ=60)

                                          ATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAAT                                                     <  SRR4302533.3146398/94‑1 (MQ=60)

                                          ATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAAT                                                     >  SRR4302533.901347/1‑94 (MQ=60)

                                            GAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTT                                                   <  SRR4302533.4261836/94‑1 (MQ=60)

                                              GCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTT                                                 <  SRR4302533.3711455/94‑1 (MQ=60)

                                              GCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTT                                                 >  SRR4302533.1358502/1‑94 (MQ=60)

                                               CGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTT                                                <  SRR4302533.5717773/94‑1 (MQ=60)

                                               CGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTT                                                >  SRR4302533.4620681/1‑94 (MQ=60)

                                               CGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTT                                                >  SRR4302533.2548542/1‑94 (MQ=60)

                                                GGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTA                                               >  SRR4302533.3564451/1‑94 (MQ=60)

                                                GGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTA                                               >  SRR4302533.5506231/1‑94 (MQ=60)

                                                GGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTA                                               <  SRR4302533.2003897/94‑1 (MQ=60)

                                                 GGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAA                                              <  SRR4302533.2566164/94‑1 (MQ=60)

                                                  GGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAAT                                             >  SRR4302533.3619556/1‑94 (MQ=60)

                                                   GATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATG                                            <  SRR4302533.531474/94‑1 (MQ=60)

                                                    ATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGA                                           <  SRR4302533.3208885/94‑1 (MQ=60)

                                                    ATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGA                                           <  SRR4302533.4216634/94‑1 (MQ=60)

                                                    ATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGA                                           <  SRR4302533.4829251/94‑1 (MQ=60)

                                                     TCTTCTTCGCTAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGAT                                          <  SRR4302533.1785923/94‑1 (MQ=60)

                                                     TCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGAT                                          <  SRR4302533.5131148/94‑1 (MQ=60)

                                                     TCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGAT                                          <  SRR4302533.436799/94‑1 (MQ=60)

                                                     TCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGAT                                          >  SRR4302533.1066329/1‑94 (MQ=60)

                                                     TCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGAT                                          <  SRR4302533.2060536/94‑1 (MQ=60)

                                                      CTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATC                                         >  SRR4302533.376302/1‑94 (MQ=60)

                                                      CTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATC                                         <  SRR4302533.4999345/94‑1 (MQ=60)

                                                       TTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACGTGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCT                                        <  SRR4302533.4646757/94‑1 (MQ=60)

                                                       TTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCT                                        >  SRR4302533.2306202/1‑94 (MQ=60)

                                                       TTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCT                                        <  SRR4302533.3563987/94‑1 (MQ=60)

                                                       TTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCT                                        <  SRR4302533.389871/94‑1 (MQ=60)

                                                        TCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTC                                       <  SRR4302533.496093/94‑1 (MQ=60)

                                                        TCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTC                                       >  SRR4302533.5787116/1‑94 (MQ=60)

                                                         CTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCT                                      <  SRR4302533.1332835/94‑1 (MQ=60)

                                                         CTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCT                                      <  SRR4302533.1708232/94‑1 (MQ=60)

                                                         CTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCT                                      <  SRR4302533.4090602/94‑1 (MQ=60)

                                                         CTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACACGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCT                                      <  SRR4302533.5120024/94‑1 (MQ=60)

                                                           TCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTC                                    <  SRR4302533.3068370/94‑1 (MQ=60)

                                                            CGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCC                                   <  SRR4302533.5621255/94‑1 (MQ=60)

                                                            CGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCC                                   >  SRR4302533.4692350/1‑94 (MQ=60)

                                                            CGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCC                                   <  SRR4302533.3896195/94‑1 (MQ=60)

                                                             GCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCA                                  >  SRR4302533.1463180/1‑94 (MQ=60)

                                                             GCCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCA                                  <  SRR4302533.2372039/94‑1 (MQ=60)

                                                              CCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAG                                 <  SRR4302533.4102121/94‑1 (MQ=60)

                                                              CCAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAG                                 <  SRR4302533.3462786/94‑1 (MQ=60)

                                                               CAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGT                                >  SRR4302533.4066805/1‑94 (MQ=60)

                                                               CAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGT                                >  SRR4302533.2488551/1‑94 (MQ=60)

                                                               CAATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGT                                >  SRR4302533.441965/1‑94 (MQ=60)

                                                                AATTCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTT                               >  SRR4302533.4214624/1‑94 (MQ=60)

                                                                   TCCAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCG                            <  SRR4302533.598915/94‑1 (MQ=60)

                                                                     CAGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGAT                          >  SRR4302533.1222474/1‑94 (MQ=60)

                                                                      AGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATT                         >  SRR4302533.1521531/1‑94 (MQ=60)

                                                                      AGAATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATT                         >  SRR4302533.4497128/1‑94 (MQ=60)

                                                                      AGAATGCGGTCTTTGGGCGAGACCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTGCAGTTGCGATT                         >  SRR4302533.4430710/1‑94 (MQ=60)

                                                                        AATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTG                       >  SRR4302533.4021607/1‑94 (MQ=60)

                                                                        AATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTG                       >  SRR4302533.4126161/1‑94 (MQ=60)

                                                                        AATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTG                       <  SRR4302533.6325187/94‑1 (MQ=60)

                                                                        AATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTG                       >  SRR4302533.4126162/1‑94 (MQ=60)

                                                                         ATGCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGG                      >  SRR4302533.1455893/1‑94 (MQ=60)

                                                                           GCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCT                    >  SRR4302533.1878208/1‑94 (MQ=60)

                                                                           GCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCT                    <  SRR4302533.3688987/94‑1 (MQ=60)

                                                                           GCGGTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCT                    >  SRR4302533.4725655/1‑94 (MQ=60)

                                                                              GTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCC                 <  SRR4302533.6098049/94‑1 (MQ=60)

                                                                              GTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCC                 >  SRR4302533.5328537/1‑94 (MQ=60)

                                                                              GTCTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCC                 >  SRR4302533.4326115/1‑94 (MQ=60)

                                                                                CTTTGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGC               >  SRR4302533.6191587/1‑94 (MQ=60)

                                                                                   TGGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCTTT            <  SRR4302533.2691462/94‑1 (MQ=60)

                                                                                    GGGCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCTTTC           >  SRR4302533.3920775/1‑94 (MQ=60)

                                                                                      GCGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCTTTCAG         <  SRR4302533.2627340/94‑1 (MQ=60)

                                                                                       CGAGCCCTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCTTTCAGG        <  SRR4302533.801299/94‑1 (MQ=60)

                                                                                       CGAGCCCTCCTCAACATGGACATGCACTCTGTCGGCTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCTTTCAGG        >  SRR4302533.4801618/1‑94 (MQ=60)

                                                                                             CTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCTTTCAGGTCATCC  >  SRR4302533.545158/1‑94 (MQ=60)

                                                                                             CTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCTTTCAGGTCATCC  >  SRR4302533.6078492/1‑94 (MQ=60)

                                                                                             CTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCTTTCAGGTCATCC  >  SRR4302533.4442039/1‑94 (MQ=60)

                                                                                             CTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCTTTCAGGTCATCC  <  SRR4302533.2924365/94‑1 (MQ=60)

ATAAGTGGTGATATCCGGTCGATGGGAAGCAATGATGATCATATGAGCGGGGATCTTCTTCGCCAATTCCAGAATGCGGTCTTTGGGCGAGCCTTCCTCAACATGGACATGCACTCTGTCGGTTGGCAGTTTAAATTTTTTAATGATCTCTTCCAGTTGCGATTTGGCTTCCGCTTTCAGGTCATCC  >  NC_000913/1433275‑1433461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`