Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,451,186 |
A→G |
C161R (TGC→CGC) |
maoC ← |
putative aldehyde dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,451,186 | 0 | A | G | 100.0%
| 672.6
/ NA
| 210 | C161R (TGC→CGC) | maoC | putative aldehyde dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (100/110); total (100/110) |
Only 100 of 224 total aligned reads displayed.
GAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCAGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAG > NC_000913/1451096‑1451274
|
gAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCggg < 1:4176980/93‑1 (MQ=255)
gAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCggg < 1:2522895/93‑1 (MQ=255)
ggTCAGTGGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCgggg < 2:415102/92‑1 (MQ=255)
gTCGGTTGGGCGGTCGCGGTAGCTGGTTTGATGATGGCGGCCATCCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGgggg < 1:4486973/93‑1 (MQ=255)
cAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGggggca > 1:858389/1‑91 (MQ=255)
gTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGt > 1:821024/1‑93 (MQ=255)
gTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGt > 1:910668/1‑93 (MQ=255)
tGGGCCGCCGCGGCAGCTGGTTTGAGGATGCGTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTa < 2:2283571/93‑1 (MQ=255)
gggCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTaa > 2:4021154/1‑93 (MQ=255)
gggCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTaa > 2:3903444/1‑93 (MQ=255)
ggCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTaaa < 1:1471985/93‑1 (MQ=255)
gccgccGCGGTAGCTGGTTTGATGATGTCTGGCATCCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAg < 2:4472259/93‑1 (MQ=255)
ccGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAgg < 2:1526836/93‑1 (MQ=255)
cGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGc < 2:5876931/93‑1 (MQ=255)
gTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCg < 1:5856091/93‑1 (MQ=255)
ccgcgTTAGCTTGTTGGATGATGCGTGGCTTGCCCCCCTGCGACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGt < 2:1554121/92‑1 (MQ=255)
cgcgGTGGTGGGTTTGATGATGGCTGCCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGtt < 1:4370911/93‑1 (MQ=255)
gcgGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTa < 1:3987550/93‑1 (MQ=255)
cgGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTaa < 2:3669895/93‑1 (MQ=255)
cgGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTaa < 1:2771007/93‑1 (MQ=255)
ggTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAat < 1:558381/93‑1 (MQ=255)
ggTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTACCCAGCGGGGGAAGTTAAACGCGTTAat > 1:5084587/1‑93 (MQ=255)
gTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAata > 1:2843633/1‑93 (MQ=255)
gTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAata > 2:3690537/1‑93 (MQ=255)
gTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAata < 2:4620693/93‑1 (MQ=255)
gTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAata < 2:4960071/93‑1 (MQ=255)
gTAGCTGGTTTGATGATGGCTGGCATCCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAata < 1:4533885/93‑1 (MQ=255)
tAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAatat < 1:5926121/93‑1 (MQ=255)
gCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGc > 2:3233179/1‑93 (MQ=255)
gCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGc < 2:2670185/93‑1 (MQ=255)
gCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGc > 1:58185/1‑93 (MQ=255)
gCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGc > 2:890873/1‑93 (MQ=255)
gCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGc > 2:2167029/1‑93 (MQ=255)
gCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGc < 1:1709058/93‑1 (MQ=255)
cgggTTTGATGTTGGCTGGCATCCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCa < 2:5392215/91‑1 (MQ=255)
tGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCAc > 1:5772501/1‑93 (MQ=255)
gttttGATGATGGCTGGCATTCCCCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACt < 1:3249194/91‑1 (MQ=255)
ggTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACt > 1:5279517/1‑93 (MQ=255)
ggTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACt < 1:1631405/93‑1 (MQ=255)
gTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTg > 1:4696816/1‑93 (MQ=255)
tttGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGc < 2:5003646/93‑1 (MQ=255)
tttGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGc > 2:2880974/1‑93 (MQ=255)
tgatgaTGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCa < 1:1142678/93‑1 (MQ=255)
gatgatGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCaa > 2:2382791/1‑92 (MQ=255)
gatgatGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCAc > 1:1952064/1‑93 (MQ=255)
gatgatGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCAc > 2:1883569/1‑93 (MQ=255)
atgatgGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGGTAAAGGCGTTAATATGCACTGCCACg > 1:2427589/1‑93 (MQ=255)
atgGCTGGCATCCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCt < 1:124333/93‑1 (MQ=255)
ctggcATCCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACt < 1:3371924/93‑1 (MQ=255)
ggcATTCCTCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACttt < 1:2601170/93‑1 (MQ=255)
ggcATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACttt > 2:5843883/1‑93 (MQ=255)
cATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGa < 2:1807091/93‑1 (MQ=255)
aTTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAg < 2:2506370/93‑1 (MQ=255)
aTTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAg > 1:5702865/1‑93 (MQ=255)
ttCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAgg > 1:2482891/1‑93 (MQ=255)
ttCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAgg > 2:4541259/1‑93 (MQ=255)
ttCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAgg < 1:3150679/93‑1 (MQ=255)
ttCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAgg > 2:3353660/1‑93 (MQ=255)
ttCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAgg > 1:2204104/1‑93 (MQ=255)
ccGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTc > 1:3898741/1‑93 (MQ=255)
gCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAg < 1:270792/93‑1 (MQ=255)
cAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTaa > 2:3066948/1‑93 (MQ=255)
aGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTaaa < 1:1450981/93‑1 (MQ=255)
gCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAAt > 1:1845595/1‑93 (MQ=255)
gCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAAt > 2:5497579/1‑93 (MQ=255)
gCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAAt < 2:3383093/93‑1 (MQ=255)
gCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAAt > 1:2441217/1‑93 (MQ=255)
ccACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATg < 2:1710865/93‑1 (MQ=255)
ccACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATg > 1:3548192/1‑93 (MQ=255)
cACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATgg < 2:6094553/93‑1 (MQ=255)
cACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATgg < 1:2065025/93‑1 (MQ=255)
aCGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGTGGTCAGTAAATGgc > 2:5298920/1‑93 (MQ=255)
aCGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGgc < 2:5810272/93‑1 (MQ=255)
gTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGATGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGgcgc < 2:2924772/93‑1 (MQ=255)
tGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGgcgcgc > 2:1992743/1‑93 (MQ=255)
tGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGgcgcgc > 2:142468/1‑93 (MQ=255)
ggTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGcgcgcg < 1:3141459/93‑1 (MQ=255)
ccAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCaa > 2:854639/1‑93 (MQ=255)
cAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCaaa > 1:177227/1‑93 (MQ=255)
cAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCaaa > 2:5559951/1‑93 (MQ=255)
aGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAAt > 1:5491403/1‑93 (MQ=255)
gCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATc < 2:6278666/93‑1 (MQ=255)
gCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATc > 1:3289864/1‑93 (MQ=255)
ttttCCAGCATTCCCCAGCGGGGGAAGATAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCa > 1:1346081/1‑93 (MQ=255)
ttCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCAcc < 2:4773733/93‑1 (MQ=255)
ccAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACctt < 1:3752125/93‑1 (MQ=255)
cAGCATTCCCCAGCGGGGGCAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACcttc > 1:422696/1‑93 (MQ=255)
cAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACcttc > 2:4454362/1‑93 (MQ=255)
aTTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTc < 2:1613998/93‑1 (MQ=255)
ttCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCg > 2:511498/1‑93 (MQ=255)
ttCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCg > 2:3172007/1‑93 (MQ=255)
ccccAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGAt < 1:670531/93‑1 (MQ=255)
cccAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATa < 1:5649103/93‑1 (MQ=255)
ccAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATaa < 2:131736/93‑1 (MQ=255)
ccAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATaa > 1:3787156/1‑93 (MQ=255)
ccAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATaa > 1:4862398/1‑93 (MQ=255)
ccAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATaa > 2:1184292/1‑93 (MQ=255)
ccAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATaa < 1:6197093/93‑1 (MQ=255)
cagcggGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAg < 1:1692322/93‑1 (MQ=255)
cagcggGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAg > 2:747492/1‑93 (MQ=255)
|
GAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCAGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAG > NC_000913/1451096‑1451274
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTGAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCAGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGGGAT > NC_000913/1451093‑1451279
|
CCTGAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCG > SRR4302533.450488/1‑94 (MQ=60)
CTGAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGG > SRR4302533.3161402/1‑94 (MQ=60)
CTGAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTAATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGG < SRR4302533.1272288/94‑1 (MQ=60)
TGAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGG > SRR4302533.3053167/1‑94 (MQ=60)
TGAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGG < SRR4302533.5647923/94‑1 (MQ=60)
GAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGG < SRR4302533.4202287/94‑1 (MQ=60)
GAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGG < SRR4302533.2538437/94‑1 (MQ=60)
GTCGGTTGGGCGGTCGCGGTAGCTGGTTTGATGATGGCGGCCATCCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGA < SRR4302533.4514139/94‑1 (MQ=60)
TCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGCA > SRR4302533.863416/1‑94 (MQ=60)
TCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAA < SRR4302533.5335988/94‑1 (MQ=60)
GAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAG > SRR4302533.3986690/1‑94 (MQ=60)
CGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGT < SRR4302533.3797369/94‑1 (MQ=60)
AGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGT > SRR4302533.692163/1‑94 (MQ=60)
AGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGT > SRR4302533.825839/1‑94 (MQ=60)
AGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGT > SRR4302533.916009/1‑94 (MQ=60)
AGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGT > SRR4302533.2832446/1‑94 (MQ=60)
TGGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATACCTCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTA < SRR4302533.2724415/94‑1 (MQ=60)
ggccgtgacaGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAG < SRR4302533.3350122/84‑1 (MQ=60)
GGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAG < SRR4302533.1480882/94‑1 (MQ=60)
GGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAG > SRR4302533.1324378/1‑94 (MQ=60)
GCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGG < SRR4302533.2311865/94‑1 (MQ=60)
GCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGG > SRR4302533.5836208/1‑94 (MQ=60)
GCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGG < SRR4302533.4412582/94‑1 (MQ=60)
GCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGC < SRR4302533.1761527/94‑1 (MQ=60)
GTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGT > SRR4302533.3300867/1‑94 (MQ=60)
GTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGT < SRR4302533.5891493/94‑1 (MQ=60)
cgcggtggtgGGTTTGATGATGGCTGCCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTA < SRR4302533.4397297/84‑1 (MQ=60)
CGCGTGAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTA < SRR4302533.213026/94‑1 (MQ=60)
GCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAA < SRR4302533.4011840/94‑1 (MQ=60)
GCGGTAGCTGGTTTGATGATGGCTGGCATCCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAA < SRR4302533.4636597/94‑1 (MQ=60)
CGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAAT < SRR4302533.2788007/94‑1 (MQ=60)
CGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTACCCAGCGGGGGAAGTTAAACGCGTTAAT > SRR4302533.5115315/1‑94 (MQ=60)
GGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATA < SRR4302533.561698/94‑1 (MQ=60)
GGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATA > SRR4302533.2861132/1‑94 (MQ=60)
GTAGCTGGTTTGATGATGGCTGGCATCCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATAT < SRR4302533.4561338/94‑1 (MQ=60)
TAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATG < SRR4302533.1427793/94‑1 (MQ=60)
TAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATG > SRR4302533.5858825/1‑94 (MQ=60)
TAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATG < SRR4302533.5961944/94‑1 (MQ=60)
AGCTGGTTTGATGATGGCTGGCGTTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGA > SRR4302533.1855030/1‑94 (MQ=60)
AGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGC > SRR4302533.237726/1‑94 (MQ=60)
AGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGC > SRR4302533.58570/1‑94 (MQ=60)
GCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCA < SRR4302533.1719413/94‑1 (MQ=60)
GCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCA > SRR4302533.2556525/1‑94 (MQ=60)
GTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCAC < SRR4302533.3926807/94‑1 (MQ=60)
CTGTTTTGATGATGGCTGGCATCCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCAC < SRR4302533.4378118/94‑1 (MQ=60)
CTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCAC > SRR4302533.5807356/1‑94 (MQ=60)
CTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCAC < SRR4302533.617027/94‑1 (MQ=60)
CTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCAC < SRR4302533.2179752/94‑1 (MQ=60)
CTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCAC > SRR4302533.2475357/1‑94 (MQ=60)
TGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACT > SRR4302533.5311158/1‑94 (MQ=60)
GTTTTGATGATGGCTGGCATTCCCCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTG < SRR4302533.3269227/94‑1 (MQ=60)
GGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTG > SRR4302533.4725290/1‑94 (MQ=60)
GGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTG < SRR4302533.1641286/94‑1 (MQ=60)
TTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCC > SRR4302533.1654167/1‑94 (MQ=60)
TGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCAC < SRR4302533.1149490/94‑1 (MQ=60)
TGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCAC > SRR4302533.1963962/1‑94 (MQ=60)
GATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGGTAAAGGCGTTAATATGCACTGCCACG > SRR4302533.2442598/1‑94 (MQ=60)
ATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGC > SRR4302533.4155545/1‑94 (MQ=60)
GATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCT > SRR4302533.2448864/1‑94 (MQ=60)
GATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCT < SRR4302533.5135199/94‑1 (MQ=60)
ATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTG < SRR4302533.935460/94‑1 (MQ=60)
ATGGCTGGCATCCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTG < SRR4302533.125114/94‑1 (MQ=60)
GCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACT > SRR4302533.5561894/1‑94 (MQ=60)
CTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTT > SRR4302533.843026/1‑94 (MQ=60)
CTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTT > SRR4302533.3244490/1‑94 (MQ=60)
CTGGCATCCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTT < SRR4302533.3392746/94‑1 (MQ=60)
TGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTT < SRR4302533.5015624/94‑1 (MQ=60)
GGCATTCCTCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTG < SRR4302533.2617151/94‑1 (MQ=60)
GGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTG > SRR4302533.1508314/1‑94 (MQ=60)
CATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAG < SRR4302533.871987/94‑1 (MQ=60)
CATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAG > SRR4302533.5737312/1‑94 (MQ=60)
ATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGG > SRR4302533.2605072/1‑94 (MQ=60)
ATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGG > SRR4302533.3889784/1‑94 (MQ=60)
ATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGG > SRR4302533.2217689/1‑94 (MQ=60)
ATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGG > SRR4302533.2498197/1‑94 (MQ=60)
TTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGT < SRR4302533.3170052/94‑1 (MQ=60)
TCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTC > SRR4302533.3922527/1‑94 (MQ=60)
GCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGT < SRR4302533.272436/94‑1 (MQ=60)
GCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGT < SRR4302533.5882741/94‑1 (MQ=60)
CCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTA < SRR4302533.3589156/94‑1 (MQ=60)
CCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTA > SRR4302533.4549313/1‑94 (MQ=60)
CCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAA > SRR4302533.1592410/1‑94 (MQ=60)
AGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCTACGCCTGACTTTGAGGTCAGTAAAT < SRR4302533.3035418/94‑1 (MQ=60)
AGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAAT < SRR4302533.4226045/94‑1 (MQ=60)
AGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAAT > SRR4302533.2456290/1‑94 (MQ=60)
AGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAAT < SRR4302533.1713935/94‑1 (MQ=60)
AGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAAT > SRR4302533.1856848/1‑94 (MQ=60)
AGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAAT < SRR4302533.1459736/94‑1 (MQ=60)
GCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATG > SRR4302533.3570058/1‑94 (MQ=60)
GCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATG > SRR4302533.3497286/1‑94 (MQ=60)
CCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGG < SRR4302533.1910362/94‑1 (MQ=60)
CCACGTTGGTGCAAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGG < SRR4302533.3163539/94‑1 (MQ=60)
CACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGC < SRR4302533.2077753/94‑1 (MQ=60)
CACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGC > SRR4302533.1218385/1‑94 (MQ=60)
ACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCG > SRR4302533.2726842/1‑94 (MQ=60)
GGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGG < SRR4302533.5650683/94‑1 (MQ=60)
GGTGCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGG < SRR4302533.3160773/94‑1 (MQ=60)
GCCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAA < SRR4302533.3375739/94‑1 (MQ=60)
CCAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAA > SRR4302533.178337/1‑94 (MQ=60)
CAGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAAT > SRR4302533.5524530/1‑94 (MQ=60)
AGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATC < SRR4302533.445284/94‑1 (MQ=60)
AGCTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATC > SRR4302533.3310175/1‑94 (MQ=60)
CTTTTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCA > SRR4302533.251943/1‑94 (MQ=60)
CTTTTCCAGCATTCCCCAGCGGGGGAAGATAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCA > SRR4302533.1354181/1‑94 (MQ=60)
TTCCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCT < SRR4302533.48114/94‑1 (MQ=60)
CCAGCATTCCCCAGCGGGGGCAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTC > SRR4302533.425226/1‑94 (MQ=60)
CCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTC < SRR4302533.5946463/94‑1 (MQ=60)
CCAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTC < SRR4302533.3775128/94‑1 (MQ=60)
CAGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCT < SRR4302533.724281/94‑1 (MQ=60)
AGCATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTT < SRR4302533.1792382/94‑1 (MQ=60)
CATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTC < SRR4302533.571478/94‑1 (MQ=60)
CATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTC < SRR4302533.4981690/94‑1 (MQ=60)
ATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCG > SRR4302533.673110/1‑94 (MQ=60)
ATTCCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCG < SRR4302533.2059311/94‑1 (MQ=60)
CCCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATA < SRR4302533.674493/94‑1 (MQ=60)
CCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAA < SRR4302533.5749168/94‑1 (MQ=60)
CCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAA > SRR4302533.3810344/1‑94 (MQ=60)
CCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAA > SRR4302533.1479001/1‑94 (MQ=60)
CCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAA < SRR4302533.5683254/94‑1 (MQ=60)
CCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAA > SRR4302533.5661957/1‑94 (MQ=60)
CCCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAA > SRR4302533.4891869/1‑94 (MQ=60)
CCAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAG < SRR4302533.6234272/94‑1 (MQ=60)
CAGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGG < SRR4302533.1702575/94‑1 (MQ=60)
AGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGG > SRR4302533.950926/1‑94 (MQ=60)
AGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGG > SRR4302533.5409946/1‑94 (MQ=60)
AGCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGG > SRR4302533.4493927/1‑94 (MQ=60)
GCGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGGG < SRR4302533.2265088/94‑1 (MQ=60)
CGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGGGA < SRR4302533.6107871/94‑1 (MQ=60)
CGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGGGA > SRR4302533.361807/1‑94 (MQ=60)
CGGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGGGA > SRR4302533.3164393/1‑94 (MQ=60)
GGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGGGAT > SRR4302533.6082251/1‑94 (MQ=60)
GGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGGGAT > SRR4302533.4648199/1‑94 (MQ=60)
GGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGGGAT < SRR4302533.4276111/94‑1 (MQ=60)
GGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGGGAT < SRR4302533.2970999/94‑1 (MQ=60)
GGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGGGAT < SRR4302533.212080/94‑1 (MQ=60)
GGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGGGAT < SRR4302533.1650601/94‑1 (MQ=60)
|
CCTGAGTCAGTTGGGCCGTCGCGGTAGCTGGTTTGATGATGGCTGGCATTCCGCCCAGCCACGTTGGTGCCAGCTTTTCCAGCATTCCCCAGCAGGGGAAGTTAAAGGCGTTAATATGCACTGCCACGCCTGACTTTGAGGTCAGTAAATGGCGCGCGGCAAATCCACCTTCTTTCGATAAGGGGAT > NC_000913/1451093‑1451279
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
