Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCGGCCACAGCGTATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATCGCCGCAC  >  NC_000913/1451291‑1451476
                                                                                            |                                                                                             
CCGGCCACAGCGTATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCC                                                                                              >  SRR4302540.2396557/1‑94 (MQ=60)
 CGGCCACAGCGTATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCT                                                                                             <  SRR4302540.5141869/94‑1 (MQ=60)
  GGCCACAGCGTATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTG                                                                                            >  SRR4302540.5531339/1‑94 (MQ=60)
   GCCACAGCGTATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGC                                                                                           >  SRR4302540.1027267/1‑94 (MQ=60)
     CACAGCGTATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCC                                                                                         >  SRR4302540.9651275/1‑94 (MQ=60)
      ACAGCGTATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCG                                                                                        <  SRR4302540.9015122/94‑1 (MQ=60)
      ACAGCGTATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCG                                                                                        <  SRR4302540.1810702/94‑1 (MQ=60)
      ACAGCGTATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCG                                                                                        <  SRR4302540.1194612/94‑1 (MQ=60)
       CAGCGTATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGC                                                                                       >  SRR4302540.305439/1‑94 (MQ=60)
          CGTATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTT                                                                                    >  SRR4302540.3708173/1‑94 (MQ=60)
          CGTATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTT                                                                                    >  SRR4302540.1890966/1‑94 (MQ=60)
           GTATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTG                                                                                   >  SRR4302540.10154313/1‑94 (MQ=60)
            TATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGC                                                                                  <  SRR4302540.4592856/94‑1 (MQ=60)
            TATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGC                                                                                  <  SRR4302540.8937771/94‑1 (MQ=60)
             ATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCG                                                                                 >  SRR4302540.3488679/1‑94 (MQ=60)
             ATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCG                                                                                 <  SRR4302540.3456480/94‑1 (MQ=60)
                GTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCT                                                                              <  SRR4302540.5962045/94‑1 (MQ=60)
                GTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCT                                                                              >  SRR4302540.4364049/1‑94 (MQ=60)
                GTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGAGTTGCGCCT                                                                              >  SRR4302540.2645562/1‑94 (MQ=60)
                  GAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGT                                                                            <  SRR4302540.2474425/94‑1 (MQ=60)
                  CAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGT                                                                            >  SRR4302540.2706099/1‑94 (MQ=60)
                      CAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGC                                                                        <  SRR4302540.4984052/94‑1 (MQ=60)
                        GCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGC                                                                      <  SRR4302540.1667202/94‑1 (MQ=60)
                        GCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGC                                                                      >  SRR4302540.6016159/1‑94 (MQ=60)
                         CTCCCGGTTACC‑AGACTGGCGTAAGTAAAAGACGTCCTAATGCCACCTTCAATATTAACCCACCTAACTGCCCGCGTTGCGCCTGTTTGCGCAG                                                                    <  SRR4302540.6971167/94‑1 (MQ=41)
                         CTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCA                                                                     <  SRR4302540.2764754/94‑1 (MQ=60)
                          TCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAG                                                                    >  SRR4302540.2560695/1‑94 (MQ=60)
                          TCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAG                                                                    >  SRR4302540.2560697/1‑94 (MQ=60)
                          TCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAG                                                                    <  SRR4302540.4816188/94‑1 (MQ=60)
                          TCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAG                                                                    >  SRR4302540.4878859/1‑94 (MQ=60)
                          TCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAG                                                                    >  SRR4302540.2091951/1‑94 (MQ=60)
                          CCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAG                                                                    <  SRR4302540.1923609/94‑1 (MQ=60)
                             CGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAA                                                                 >  SRR4302540.7800809/1‑94 (MQ=60)
                             CGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAA                                                                 <  SRR4302540.914571/94‑1 (MQ=60)
                              GGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAG                                                                >  SRR4302540.1645891/1‑94 (MQ=60)
                                CTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAG                                                              >  SRR4302540.9684421/1‑94 (MQ=60)
                                CTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAG                                                              <  SRR4302540.8514838/94‑1 (MQ=60)
                                CTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAG                                                              <  SRR4302540.8227920/94‑1 (MQ=60)
                                CTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAG                                                              <  SRR4302540.5165115/94‑1 (MQ=60)
                                CTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAG                                                              <  SRR4302540.6910418/94‑1 (MQ=60)
                                 TACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGC                                                             >  SRR4302540.2119617/1‑94 (MQ=60)
                                 TACCGAGGCTGGCGTAAGTAAATAACCTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTCCGCCTCTTTGCGCAGAAAGAGC                                                             >  SRR4302540.9728273/1‑94 (MQ=60)
                                  ACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCA                                                            >  SRR4302540.5221881/1‑94 (MQ=60)
                                   CCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCAT                                                           >  SRR4302540.2408296/1‑94 (MQ=60)
                                    CGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATA                                                          <  SRR4302540.8273640/94‑1 (MQ=60)
                                     GAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAG                                                         <  SRR4302540.3475866/94‑1 (MQ=60)
                                       GGCTGGCGTAAGTAAATAACGTGCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAA                                                       <  SRR4302540.2857802/94‑1 (MQ=60)
                                         CTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAAC                                                     <  SRR4302540.6617107/94‑1 (MQ=60)
                                          TGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACG                                                    <  SRR4302540.6539948/94‑1 (MQ=60)
                                            GCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCT                                                  <  SRR4302540.8338789/94‑1 (MQ=60)
                                             CGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTC                                                 <  SRR4302540.1937005/94‑1 (MQ=60)
                                             CGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTC                                                 >  SRR4302540.1399101/1‑94 (MQ=60)
                                              GTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCT                                                >  SRR4302540.4974731/1‑94 (MQ=60)
                                              GTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTTCCCGCGTTTCGCCTGTTTGCGCAGAAATAGCATAGAAACGCTCT                                                >  SRR4302540.7813926/1‑94 (MQ=60)
                                              GTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCT                                                <  SRR4302540.4989791/94‑1 (MQ=60)
                                               TAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTT                                               <  SRR4302540.4248731/94‑1 (MQ=60)
                                                  GTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTT                                            >  SRR4302540.7161886/1‑94 (MQ=60)
                                                  ATAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTT                                            <  SRR4302540.3035801/94‑1 (MQ=60)
                                                     AATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCAC                                         <  SRR4302540.9155456/94‑1 (MQ=60)
                                                     AATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCAC                                         <  SRR4302540.1208570/94‑1 (MQ=60)
                                                     AATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCAC                                         >  SRR4302540.10113398/1‑94 (MQ=60)
                                                      ATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACT                                        >  SRR4302540.2473163/1‑94 (MQ=60)
                                                      ATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACT                                        <  SRR4302540.8608760/94‑1 (MQ=60)
                                                       TAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTC                                       >  SRR4302540.9221643/1‑94 (MQ=60)
                                                        AACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCA                                      <  SRR4302540.8105146/94‑1 (MQ=60)
                                                         ACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAG                                     >  SRR4302540.5114064/1‑94 (MQ=60)
                                                         ACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAG                                     <  SRR4302540.4605117/94‑1 (MQ=60)
                                                         ACGTCCCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAG                                     <  SRR4302540.4605116/94‑1 (MQ=60)
                                                           GTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCA                                   >  SRR4302540.101339/1‑94 (MQ=60)
                                                           ATCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCA                                   >  SRR4302540.4187522/1‑94 (MQ=60)
                                                            TCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAG                                  <  SRR4302540.804044/94‑1 (MQ=60)
                                                             CCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGA                                 >  SRR4302540.2982775/1‑94 (MQ=60)
                                                              CCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGAT                                <  SRR4302540.7866805/94‑1 (MQ=60)
                                                              CCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGAT                                >  SRR4302540.9762278/1‑94 (MQ=60)
                                                              CCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGAT                                >  SRR4302540.9762279/1‑94 (MQ=60)
                                                              CCAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGAT                                >  SRR4302540.1625514/1‑94 (MQ=60)
                                                               CAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATG                               >  SRR4302540.889586/1‑94 (MQ=60)
                                                               CAATGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATG                               <  SRR4302540.6192787/94‑1 (MQ=60)
                                                                AATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGT                              <  SRR4302540.6018637/94‑1 (MQ=60)
                                                                  TGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTT                            <  SRR4302540.5392750/94‑1 (MQ=60)
                                                                  TGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTT                            >  SRR4302540.3185430/1‑94 (MQ=60)
                                                                  TGCCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTT                            <  SRR4302540.6446361/94‑1 (MQ=60)
                                                                   GCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTA                           >  SRR4302540.7585401/1‑94 (MQ=60)
                                                                   GCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTA                           <  SRR4302540.9573762/94‑1 (MQ=60)
                                                                   GCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTA                           >  SRR4302540.7585400/1‑94 (MQ=60)
                                                                   GCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTA                           <  SRR4302540.9170803/94‑1 (MQ=60)
                                                                    CCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAG                          >  SRR4302540.9143/1‑94 (MQ=60)
                                                                    CCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAG                          <  SRR4302540.8909022/94‑1 (MQ=60)
                                                                    CCACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAG                          <  SRR4302540.8909023/94‑1 (MQ=60)
                                                                     CACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGC                         >  SRR4302540.8851744/1‑94 (MQ=60)
                                                                     CACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGC                         >  SRR4302540.393665/1‑94 (MQ=60)
                                                                      ACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCG                        >  SRR4302540.1802545/1‑94 (MQ=60)
                                                                      ACCTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCG                        >  SRR4302540.8805483/1‑94 (MQ=60)
                                                                       CCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGA                       >  SRR4302540.1637047/1‑94 (MQ=60)
                                                                        CTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGAC                      >  SRR4302540.5073349/1‑94 (MQ=60)
                                                                        CTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGAC                      >  SRR4302540.942952/1‑94 (MQ=60)
                                                                        CTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGAC                      >  SRR4302540.6724625/1‑94 (MQ=60)
                                                                        CTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGAC                      >  SRR4302540.4770183/1‑94 (MQ=60)
                                                                        CTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGAC                      >  SRR4302540.3017302/1‑94 (MQ=60)
                                                                        CTTCAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGAC                      >  SRR4302540.5447312/1‑94 (MQ=60)
                                                                           CAATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGC                   >  SRR4302540.1743431/1‑94 (MQ=60)
                                                                            AATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCT                  >  SRR4302540.2631689/1‑94 (MQ=60)
                                                                             ATATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTT                 >  SRR4302540.8751663/1‑94 (MQ=60)
                                                                              TATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTT                <  SRR4302540.1813173/94‑1 (MQ=60)
                                                                              TATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTT                <  SRR4302540.6240526/94‑1 (MQ=60)
                                                                              TATCAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTACCGACCGCTTT                >  SRR4302540.3542457/1‑94 (MQ=60)
                                                                                 CACCCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAG             <  SRR4302540.2603022/94‑1 (MQ=60)
                                                                                 CAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAG             >  SRR4302540.506210/1‑94 (MQ=60)
                                                                                 CAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAG             <  SRR4302540.2603023/94‑1 (MQ=60)
                                                                                 CAACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAG             <  SRR4302540.6127067/94‑1 (MQ=60)
                                                                                  AACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGC            >  SRR4302540.4914840/1‑94 (MQ=60)
                                                                                   ACCCAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCA           <  SRR4302540.9334959/94‑1 (MQ=60)
                                                                                     ctaatTGTCTGTCCGCGATGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATC         <  SRR4302540.6857432/89‑1 (MQ=60)
                                                                                     CCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATC         >  SRR4302540.7974443/1‑94 (MQ=60)
                                                                                     CCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATC         <  SRR4302540.6857689/94‑1 (MQ=60)
                                                                                     CCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATC         <  SRR4302540.706891/94‑1 (MQ=60)
                                                                                     CCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATC         <  SRR4302540.706895/94‑1 (MQ=60)
                                                                                      CAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATat        >  SRR4302540.6756103/1‑92 (MQ=60)
                                                                                      CAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATCG        >  SRR4302540.6756104/1‑94 (MQ=60)
                                                                                      CAACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATCG        >  SRR4302540.3547513/1‑94 (MQ=60)
                                                                                       AACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATCGC       >  SRR4302540.882580/1‑94 (MQ=60)
                                                                                        ACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATCGCC      <  SRR4302540.3571866/94‑1 (MQ=60)
                                                                                        ACTGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATCGCC      <  SRR4302540.2893581/94‑1 (MQ=60)
                                                                                          TGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATCGCCGC    >  SRR4302540.761739/1‑94 (MQ=60)
                                                                                          TGCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATCGCCGC    >  SRR4302540.163030/1‑94 (MQ=60)
                                                                                           GTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATCGCCGCA   >  SRR4302540.8363350/1‑94 (MQ=60)
                                                                                           GTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATCGCCGCA   >  SRR4302540.3014233/1‑94 (MQ=60)
                                                                                           GCCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATCGCCGCA   <  SRR4302540.2248157/94‑1 (MQ=60)
                                                                                            CCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATCGCCGCAC  <  SRR4302540.5592232/94‑1 (MQ=60)
                                                                                            CCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATCGCCGCAC  <  SRR4302540.1350549/94‑1 (MQ=60)
                                                                                            |                                                                                             
CCGGCCACAGCGTATCGTCAGGCAGCTCCCGGCTACCGAGGCTGGCGTAAGTAAATAACGTCCCAATGCCACCTTCAATATCAACCCAACTGTCTGCCCGCGTTGCGCCTGTTTGCGCAGAAAGAGCATAGAAACGCTCTTTTTCACTCAGCAGATGTTTAGCGACCGCTTTAAGCATCGCCGCAC  >  NC_000913/1451291‑1451476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑