Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,561,521	C→T	S754N (AGC→AAC)	b1489 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,561,521	0	C	T	100.0%	747.8 / NA	210	S754N (AGC→AAC)	b1489	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (104/106); total (104/106)

Only 100 of 218 total aligned reads displayed.

TATCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGCTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGATT  >  NC_000913/1561431‑1561610

tatCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGCCGCCTTCCGCCACGACGGTTAAATTGAGGttt                                                                                         <  2:1564695/93‑1 (MQ=255)

tatCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGttt                                                                                         >  1:3212310/1‑93 (MQ=255)

tatCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGttt                                                                                         <  2:2002897/93‑1 (MQ=255)

 atCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGtttt                                                                                        <  1:351937/93‑1 (MQ=255)

  tCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTg                                                                                       >  2:1057533/1‑93 (MQ=255)

  tCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTg                                                                                       >  2:302448/1‑93 (MQ=255)

     cTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGccc                                                                                    <  1:5182603/93‑1 (MQ=255)

      tGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCa                                                                                   >  1:4399388/1‑93 (MQ=255)

         aTAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATg                                                                                >  2:215444/1‑93 (MQ=255)

         aTAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATg                                                                                <  2:4564477/93‑1 (MQ=255)

           aaCGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCt                                                                              <  2:5715797/93‑1 (MQ=255)

           aaCGCGACAGTGAATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCt                                                                              <  2:5854701/93‑1 (MQ=255)

            aCGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTg                                                                             >  1:4521658/1‑93 (MQ=255)

              gcgACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGt                                                                           <  1:1323932/93‑1 (MQ=255)

              gcgACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGt                                                                           <  2:4052054/93‑1 (MQ=255)

                gACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTaa                                                                         >  2:3440968/1‑93 (MQ=255)

                gACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTaa                                                                         >  2:548052/1‑93 (MQ=255)

                 aCAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAAt                                                                        <  2:4083602/93‑1 (MQ=255)

                 aCAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAAt                                                                        >  2:1281778/1‑93 (MQ=255)

                 aCAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAAt                                                                        <  2:3116928/93‑1 (MQ=255)

                 aCAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAAt                                                                        <  2:3121419/93‑1 (MQ=255)

                 aCAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAAt                                                                        <  1:2667468/93‑1 (MQ=255)

                    gTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGc                                                                     >  1:3987527/1‑93 (MQ=255)

                     tGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCt                                                                    >  1:902721/1‑93 (MQ=255)

                     tGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCt                                                                    <  1:2323202/93‑1 (MQ=255)

                      ggATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCtt                                                                   <  2:5699771/93‑1 (MQ=255)

                         tCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCaa                                                                <  2:3092380/93‑1 (MQ=255)

                         tCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCaa                                                                >  1:5970769/1‑93 (MQ=255)

                           ttGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGt                                                              >  2:2457179/1‑93 (MQ=255)

                            tGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTa                                                             <  1:3849808/93‑1 (MQ=255)

                             gCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTaa                                                            <  2:1325588/93‑1 (MQ=255)

                             gCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTaa                                                            <  1:197788/93‑1 (MQ=255)

                              cGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCTCGACGGTCAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAg                                                           <  1:4446355/93‑1 (MQ=255)

                              cGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAg                                                           <  1:3127514/93‑1 (MQ=255)

                              cGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAg                                                           <  2:3934753/93‑1 (MQ=255)

                              cGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAg                                                           <  1:1895623/93‑1 (MQ=255)

                              cGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAg                                                           <  2:1755662/93‑1 (MQ=255)

                              cGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAg                                                           >  2:4623831/1‑93 (MQ=255)

                               gTAGCATTTCAAATTGCTTTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAgg                                                          <  2:6288768/93‑1 (MQ=255)

                                tAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGc                                                         <  1:1237859/93‑1 (MQ=255)

                                tAGCATCTCAAATTGCTCTTGGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGc                                                         <  1:4185313/93‑1 (MQ=255)

                                 aGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCa                                                        >  2:3257906/1‑93 (MQ=255)

                                  gCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCaa                                                       >  1:1594136/1‑93 (MQ=255)

                                  gCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCaa                                                       >  1:5331927/1‑93 (MQ=255)

                                     tctcAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAATGa                                                    >  1:2446732/1‑93 (MQ=255)

                                     tctcAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGa                                                    >  1:4327107/1‑93 (MQ=255)

                                     tctcAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGa                                                    <  2:5001471/93‑1 (MQ=255)

                                     tcacAAATAACTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAAAGCAGGTAATGGCTTCAAGTAAGGCAAAGa                                                    <  2:6300331/90‑1 (MQ=255)

                                      ctcAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGAt                                                   >  1:1717199/1‑93 (MQ=255)

                                      ctcAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGAt                                                   <  1:4044075/93‑1 (MQ=255)

                                       tcAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCCATGCTGGCAATGGCTTCCAGTAACGCAAGGATg                                                  >  2:5436861/1‑93 (MQ=255)

                                        cAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGc                                                 <  1:4939704/93‑1 (MQ=255)

                                         aaaTTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCg                                                >  2:4159054/1‑93 (MQ=255)

                                           aTTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGtt                                              <  2:4207414/93‑1 (MQ=255)

                                            ttGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGttt                                             >  1:1435718/1‑93 (MQ=255)

                                               ctctTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTc                                          <  1:5279092/93‑1 (MQ=255)

                                                   ttGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTc                                      <  1:654535/93‑1 (MQ=255)

                                                    tGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTAGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCa                                     <  1:5520723/93‑1 (MQ=255)

                                                      gTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGa                                   <  1:2132257/93‑1 (MQ=255)

                                                       tttCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGATGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGAc                                  >  1:1164365/1‑93 (MQ=255)

                                                          cGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAAc                               <  1:5774672/93‑1 (MQ=255)

                                                          cGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAAc                               <  2:3369455/93‑1 (MQ=255)

                                                           gACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACg                              >  2:749840/1‑93 (MQ=255)

                                                           gACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACg                              >  1:4266488/1‑93 (MQ=255)

                                                           gACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACg                              >  2:2801563/1‑93 (MQ=255)

                                                            aCGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGa                             >  2:4770891/1‑93 (MQ=255)

                                                            aCGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGa                             <  2:816421/93‑1 (MQ=255)

                                                             cGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGAt                            <  1:3077660/93‑1 (MQ=255)

                                                             cGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGAt                            <  1:4203333/93‑1 (MQ=255)

                                                              gCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATc                           <  2:1090134/93‑1 (MQ=255)

                                                               ccTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCg                          >  1:3721996/1‑93 (MQ=255)

                                                               ccTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCg                          >  1:2892953/1‑93 (MQ=255)

                                                               ccTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCg                          >  1:2561295/1‑93 (MQ=255)

                                                                cTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGa                         >  2:5993901/1‑93 (MQ=255)

                                                                 ttCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGAc                        >  1:4575406/1‑93 (MQ=255)

                                                                 ttCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGAc                        >  1:4704972/1‑93 (MQ=255)

                                                                 ttCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGAc                        >  2:1478581/1‑93 (MQ=255)

                                                                 ttCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGAc                        <  2:1421178/93‑1 (MQ=255)

                                                                  tCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACa                       <  1:1516149/93‑1 (MQ=255)

                                                                  tCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACa                       <  1:6136760/93‑1 (MQ=255)

                                                                       cACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACt                  >  1:6290631/1‑93 (MQ=255)

                                                                          gacgGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACtttt               >  2:3685980/1‑93 (MQ=255)

                                                                          gacgGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACtttt               <  2:3147814/93‑1 (MQ=255)

                                                                          gacgGTTAAATTGAGGTTTTGACCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACtttt               <  1:1101480/93‑1 (MQ=255)

                                                                           acgGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTg              <  2:3510812/93‑1 (MQ=255)

                                                                           acgGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTg              >  2:4716662/1‑93 (MQ=255)

                                                                           acgGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTg              >  2:2863375/1‑93 (MQ=255)

                                                                           acgGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTg              <  2:3734116/93‑1 (MQ=255)

                                                                             ggTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTc            >  2:899685/1‑93 (MQ=255)

                                                                             ggTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTc            >  2:4900619/1‑93 (MQ=255)

                                                                              gTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCa           >  1:3341452/1‑93 (MQ=255)

                                                                               ttAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCaa          <  1:2254040/93‑1 (MQ=255)

                                                                                  aaTTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAAttt       >  1:1286956/1‑93 (MQ=255)

                                                                                    ttGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTg     >  1:5704972/1‑93 (MQ=255)

                                                                                    ttGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTg     >  1:4796042/1‑93 (MQ=255)

                                                                                    ttGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTg     <  1:2169499/93‑1 (MQ=255)

                                                                                    ttGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTg     <  1:1214457/93‑1 (MQ=255)

                                                                                      gAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGAt   <  1:5904740/93‑1 (MQ=255)

                                                                                      gAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGAt   <  1:3653563/93‑1 (MQ=255)

                                                                                       aGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATTGACAAAACTTTTGTCAATTTTGAtt  <  2:173037/93‑1 (MQ=255)

TATCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGCTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGATT  >  NC_000913/1561431‑1561610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AATATCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGCTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGATTTCCG  >  NC_000913/1561429‑1561614

AATATCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTT                                                                                              <  SRR4302533.1172716/94‑1 (MQ=60)

 ATATCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTT                                                                                             >  SRR4302533.3232096/1‑94 (MQ=60)

  TATCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTT                                                                                            >  SRR4302533.1141137/1‑94 (MQ=60)

   TTCCCTGAATAACGCGACAGTGTATCTTGCATAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTG                                                                                           <  SRR4302533.3142139/94‑1 (MQ=60)

   ATCCCTGAATACCGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTG                                                                                           <  SRR4302533.4319354/94‑1 (MQ=60)

   ATCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTG                                                                                           <  SRR4302533.354084/94‑1 (MQ=60)

    TCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGC                                                                                          >  SRR4302533.444460/1‑94 (MQ=60)

    TCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGC                                                                                          >  SRR4302533.1349203/1‑94 (MQ=60)

    TCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGATTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGC                                                                                          >  SRR4302533.5417418/1‑94 (MQ=60)

       CTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGCCGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCA                                                                                       <  SRR4302533.5569723/94‑1 (MQ=60)

       CTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCA                                                                                       <  SRR4302533.5213895/94‑1 (MQ=60)

       CTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCA                                                                                       >  SRR4302533.4425950/1‑94 (MQ=60)

        TGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAA                                                                                      <  SRR4302533.349890/94‑1 (MQ=60)

           ATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGC                                                                                   >  SRR4302533.3981023/1‑94 (MQ=60)

             AACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTG                                                                                 >  SRR4302533.4549036/1‑94 (MQ=60)

             AACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTG                                                                                 >  SRR4302533.3302115/1‑94 (MQ=60)

              ACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGG                                                                                <  SRR4302533.5317861/94‑1 (MQ=60)

               CGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGT                                                                               <  SRR4302533.2229872/94‑1 (MQ=60)

                GCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTA                                                                              <  SRR4302533.1331872/94‑1 (MQ=60)

                  GACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAAT                                                                            >  SRR4302533.1911481/1‑94 (MQ=60)

                  GACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAAT                                                                            >  SRR4302533.1734563/1‑94 (MQ=60)

                  GACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAAT                                                                            >  SRR4302533.4517072/1‑94 (MQ=60)

                  GACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAAT                                                                            >  SRR4302533.2682348/1‑94 (MQ=60)

                   ACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATG                                                                           <  SRR4302533.2683834/94‑1 (MQ=60)

                     AGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGC                                                                         >  SRR4302533.4011816/1‑94 (MQ=60)

                      GTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCT                                                                        >  SRR4302533.2150440/1‑94 (MQ=60)

                      GTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCT                                                                        >  SRR4302533.908016/1‑94 (MQ=60)

                       TGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTT                                                                       <  SRR4302533.2337582/94‑1 (MQ=60)

                        GGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTC                                                                      <  SRR4302533.213745/94‑1 (MQ=60)

                         GATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCA                                                                     <  SRR4302533.5747502/94‑1 (MQ=60)

                         GATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCA                                                                     >  SRR4302533.729790/1‑94 (MQ=60)

                          ATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAA                                                                    >  SRR4302533.6006914/1‑94 (MQ=60)

                          ATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAA                                                                    >  SRR4302533.327741/1‑94 (MQ=60)

                             TTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTA                                                                 <  SRR4302533.1252340/94‑1 (MQ=60)

                              TGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAA                                                                <  SRR4302533.3873317/94‑1 (MQ=60)

                               GCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAG                                                               <  SRR4302533.199034/94‑1 (MQ=60)

                               GCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAG                                                               >  SRR4302533.2447508/1‑94 (MQ=60)

                                CGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCTCGACGGTCAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGG                                                              <  SRR4302533.4473247/94‑1 (MQ=60)

                                CGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGG                                                              <  SRR4302533.3146739/94‑1 (MQ=60)

                                CGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGG                                                              <  SRR4302533.4100861/94‑1 (MQ=60)

                                CGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGG                                                              >  SRR4302533.4804430/1‑94 (MQ=60)

                                CGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGG                                                              <  SRR4302533.1907193/94‑1 (MQ=60)

                                 GTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGC                                                             >  SRR4302533.6325553/1‑94 (MQ=60)

                                 GTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGC                                                             >  SRR4302533.3106913/1‑94 (MQ=60)

                                  TAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCA                                                            <  SRR4302533.1245254/94‑1 (MQ=60)

                                  TAGCATCTCAAATTGCTCTTGGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCA                                                            <  SRR4302533.4210653/94‑1 (MQ=60)

                                   AGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAA                                                           >  SRR4302533.5363883/1‑94 (MQ=60)

                                   AGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAA                                                           >  SRR4302533.1603783/1‑94 (MQ=60)

                                    ACATCTCAAATTGCTCTTTGGTTTCGCCGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAG                                                          <  SRR4302533.5637395/94‑1 (MQ=60)

                                     CATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGG                                                         >  SRR4302533.1544810/1‑94 (MQ=60)

                                      ATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAATGA                                                        >  SRR4302533.2461832/1‑94 (MQ=60)

                                      ATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGA                                                        >  SRR4302533.2539515/1‑94 (MQ=60)

                                      ATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGA                                                        >  SRR4302533.4353173/1‑94 (MQ=60)

                                       TCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGAT                                                       >  SRR4302533.1727608/1‑94 (MQ=60)

                                        CTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATG                                                      <  SRR4302533.4068689/94‑1 (MQ=60)

                                        CTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATG                                                      <  SRR4302533.442137/94‑1 (MQ=60)

                                         TCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGC                                                     >  SRR4302533.5970944/1‑94 (MQ=60)

                                          CAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCG                                                    <  SRR4302533.2918622/94‑1 (MQ=60)

                                          CAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCG                                                    <  SRR4302533.4969605/94‑1 (MQ=60)

                                           AAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGT                                                   >  SRR4302533.6219365/1‑94 (MQ=60)

                                             ATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTT                                                 >  SRR4302533.1444386/1‑94 (MQ=60)

                                             ATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTT                                                 <  SRR4302533.1238360/94‑1 (MQ=60)

                                                GCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTC                                              >  SRR4302533.4214350/1‑94 (MQ=60)

                                                 CTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCG                                             <  SRR4302533.5310733/94‑1 (MQ=60)

                                                  TCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGG                                            <  SRR4302533.1328142/94‑1 (MQ=60)

                                                  TCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGG                                            >  SRR4302533.146456/1‑94 (MQ=60)

                                                     TTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCA                                         <  SRR4302533.441636/94‑1 (MQ=60)

                                                     TTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCA                                         <  SRR4302533.658400/94‑1 (MQ=60)

                                                      TGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTAGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAG                                        <  SRR4302533.5554054/94‑1 (MQ=60)

                                                       GGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGA                                       <  SRR4302533.3835213/94‑1 (MQ=60)

                                                        GTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGAC                                      <  SRR4302533.2145406/94‑1 (MQ=60)

                                                        GTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGATGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGAC                                      >  SRR4302533.1171347/1‑94 (MQ=60)

                                                          TTCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAA                                    <  SRR4302533.6148348/94‑1 (MQ=60)

                                                           TCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAAC                                   <  SRR4302533.2730979/94‑1 (MQ=60)

                                                           TCGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAAC                                   <  SRR4302533.4609936/94‑1 (MQ=60)

                                                            CGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACG                                  >  SRR4302533.4292181/1‑94 (MQ=60)

                                                            CGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACG                                  <  SRR4302533.4007202/94‑1 (MQ=60)

                                                            CGACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACG                                  <  SRR4302533.5809545/94‑1 (MQ=60)

                                                             GACGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGA                                 <  SRR4302533.5881995/94‑1 (MQ=60)

                                                               CGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATC                               <  SRR4302533.4228762/94‑1 (MQ=60)

                                                               CGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATC                               <  SRR4302533.5304809/94‑1 (MQ=60)

                                                               CGCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATC                               <  SRR4302533.3096546/94‑1 (MQ=60)

                                                                GCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCG                              >  SRR4302533.3744837/1‑94 (MQ=60)

                                                                GCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCG                              >  SRR4302533.2577067/1‑94 (MQ=60)

                                                                GCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCG                              >  SRR4302533.2910733/1‑94 (MQ=60)

                                                                GCCTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCG                              <  SRR4302533.6331962/94‑1 (MQ=60)

                                                                  CTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGAC                            >  SRR4302533.4603133/1‑94 (MQ=60)

                                                                  CTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGAC                            >  SRR4302533.4733489/1‑94 (MQ=60)

                                                                  CTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGAC                            <  SRR4302533.3151838/94‑1 (MQ=60)

                                                                  CTTCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGAC                            >  SRR4302533.4909038/1‑94 (MQ=60)

                                                                    TCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAA                          <  SRR4302533.6173731/94‑1 (MQ=60)

                                                                    TCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAA                          >  SRR4302533.253147/1‑94 (MQ=60)

                                                                    TCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAA                          <  SRR4302533.1525278/94‑1 (MQ=60)

                                                                    TCCGCCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAA                          <  SRR4302533.4067353/94‑1 (MQ=60)

                                                                        CCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACT                      >  SRR4302533.6328144/1‑94 (MQ=60)

                                                                        CCACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACT                      <  SRR4302533.119169/94‑1 (MQ=60)

                                                                         CACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTT                     >  SRR4302533.3584052/1‑94 (MQ=60)

                                                                          ACGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTT                    <  SRR4302533.2327627/94‑1 (MQ=60)

                                                                           CGACGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTT                   >  SRR4302533.1424662/1‑94 (MQ=60)

                                                                            GACGGTTAAATTGAGGTTTTGACCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTG                  <  SRR4302533.1108007/94‑1 (MQ=60)

                                                                              CGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTC                >  SRR4302533.4739602/1‑94 (MQ=60)

                                                                              CGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTC                <  SRR4302533.4239254/94‑1 (MQ=60)

                                                                              CGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTC                >  SRR4302533.1693352/1‑94 (MQ=60)

                                                                              CGGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTA                >  SRR4302533.4567995/1‑94 (MQ=60)

                                                                               GGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCA               >  SRR4302533.3362105/1‑94 (MQ=60)

                                                                               GGTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGCCAGACAACGATCGACAAAACTTTTGTCA               >  SRR4302533.1002002/1‑94 (MQ=60)

                                                                                GTTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAA              >  SRR4302533.5054900/1‑94 (MQ=60)

                                                                                 TTAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAAT             <  SRR4302533.2267979/94‑1 (MQ=60)

                                                                                  TAAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATT            >  SRR4302533.3689959/1‑94 (MQ=60)

                                                                                   AAATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTT           >  SRR4302533.1294699/1‑94 (MQ=60)

                                                                                     ATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTG         >  SRR4302533.4825094/1‑94 (MQ=60)

                                                                                     ATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTG         >  SRR4302533.2098694/1‑94 (MQ=60)

                                                                                     ATTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTG         >  SRR4302533.5739432/1‑94 (MQ=60)

                                                                                      TTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGA        <  SRR4302533.2182843/94‑1 (MQ=60)

                                                                                      TTGAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGA        <  SRR4302533.1221753/94‑1 (MQ=60)

                                                                                        GAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGATT      <  SRR4302533.5940402/94‑1 (MQ=60)

                                                                                        GAGGTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGATT      <  SRR4302533.3676028/94‑1 (MQ=60)

                                                                                         AGGTTTTGCCCAATGCTGGGAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGATTT     >  SRR4302533.4029145/1‑94 (MQ=60)

                                                                                           GTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGATTTCC   <  SRR4302533.6305160/94‑1 (MQ=60)

                                                                                           GTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGATTTCC   <  SRR4302533.3882226/94‑1 (MQ=60)

                                                                                           GTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGATTTCC   <  SRR4302533.1313788/94‑1 (MQ=60)

                                                                                           GTTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGATTTCC   <  SRR4302533.1123970/94‑1 (MQ=60)

                                                                                            TTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGATTTCCG  <  SRR4302533.3537278/94‑1 (MQ=60)

AATATCCCTGAATAACGCGACAGTGGATCTTGCGTAGCATCTCAAATTGCTCTTTGGTTTCGACGCCTTCCGCCACGACGGTTAAATTGAGGCTTTGCCCAATGCTGGTAATGGCTTCAAGTAAGGCAAGGATGCGTTTTTCGGTCAGACAACGATCGACAAAACTTTTGTCAATTTTGATTTCCG  >  NC_000913/1561429‑1561614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`