Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,722,918 T→A N247Y (AAC→TAC)  b1647 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,722,9180TA100.0% 698.6 / NA 192N247Y (AAC→TAC) b1647hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (110/82);  total (110/82)

Only 100 of 203 total aligned reads displayed.

TTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTTAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACA  >  NC_000913/1722828‑1723007
                                                                                          |                                                                                         
tttCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTaaa                                                                                         >  1:6003617/1‑93 (MQ=255)
tttCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTaaa                                                                                         >  1:6023959/1‑93 (MQ=255)
tttCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTaaa                                                                                         >  1:2070996/1‑93 (MQ=255)
tttCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTaaa                                                                                         >  2:6257330/1‑93 (MQ=255)
 ttCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAac                                                                                        >  1:5881285/1‑93 (MQ=255)
     gCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAaccacc                                                                                    <  1:1746615/93‑1 (MQ=255)
     gCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAaccacc                                                                                    >  2:3603940/1‑93 (MQ=255)
     gCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAaccacc                                                                                    >  2:3373998/1‑93 (MQ=255)
      cTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGCAATACCCAGGCGTAAACCAGCt                                                                                   >  2:894294/1‑93 (MQ=255)
       ttCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTg                                                                                  >  2:3314128/1‑93 (MQ=255)
        tCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGt                                                                                 <  2:5014339/93‑1 (MQ=255)
          gACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTc                                                                               >  2:3864490/1‑93 (MQ=255)
             aGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAAt                                                                            >  2:1582116/1‑93 (MQ=255)
              gCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATc                                                                           <  2:422728/93‑1 (MQ=255)
                tGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAACCCACCTGTTCAATCGa                                                                         <  2:4428083/93‑1 (MQ=255)
                tGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGa                                                                         >  2:3545788/1‑93 (MQ=255)
                tGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGa                                                                         <  1:2490438/93‑1 (MQ=255)
                 gCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAg                                                                        >  2:704973/1‑93 (MQ=255)
                 gCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAg                                                                        >  1:828246/1‑93 (MQ=255)
                  cccGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGc                                                                       >  1:2373254/1‑93 (MQ=255)
                  cccGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGc                                                                       <  1:2038092/93‑1 (MQ=255)
                   ccGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGcc                                                                      >  2:5413991/1‑93 (MQ=255)
                    cGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGccc                                                                     >  2:5788207/1‑93 (MQ=255)
                     gTACGCGCTCCATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGGTCAATCGAGcccc                                                                    >  1:4306659/1‑92 (MQ=255)
                     gTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCcg                                                                    >  1:4463705/1‑93 (MQ=255)
                      tACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCcgc                                                                   >  2:5820552/1‑93 (MQ=255)
                      tACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCcgc                                                                   <  1:5187917/93‑1 (MQ=255)
                        cgcgCTCAATTTTCCCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGt                                                                 <  1:3981714/93‑1 (MQ=255)
                        cgcgCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGt                                                                 >  2:6245879/1‑93 (MQ=255)
                        cgcgCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGt                                                                 >  2:5124008/1‑93 (MQ=255)
                         gcgcTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGtt                                                                <  1:2671875/93‑1 (MQ=255)
                           gcTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGCGCCCGCGATTa                                                              >  1:475224/1‑93 (MQ=255)
                           gcTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTa                                                              >  1:3990700/1‑93 (MQ=255)
                           gcTAAATTTCACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTa                                                              <  2:1185801/93‑1 (MQ=255)
                            cTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTaa                                                             >  2:2439056/1‑93 (MQ=255)
                            cTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTaa                                                             >  1:2674597/1‑93 (MQ=255)
                             tCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAc                                                            >  1:3429392/1‑93 (MQ=255)
                             tCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAc                                                            >  1:5379937/1‑93 (MQ=255)
                             tCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAc                                                            <  1:2394190/93‑1 (MQ=255)
                                  tttACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAActcctc                                                       <  1:1465719/93‑1 (MQ=255)
                                     aCCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGc                                                    >  1:5909653/1‑93 (MQ=255)
                                       cTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGcca                                                  <  2:4046481/93‑1 (MQ=255)
                                       cTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGcca                                                  >  1:5682569/1‑93 (MQ=255)
                                        tGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGccac                                                 >  2:1023583/1‑93 (MQ=255)
                                           aCCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCcaccac                                              <  1:5884916/93‑1 (MQ=255)
                                           aCCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCcaccac                                              <  2:5447310/93‑1 (MQ=255)
                                            ccGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACAACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACcaca                                             <  1:3383219/93‑1 (MQ=255)
                                              gATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGc                                           >  2:223797/1‑93 (MQ=255)
                                              gATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGc                                           <  2:1532441/93‑1 (MQ=255)
                                                tAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCa                                         >  2:2285842/1‑93 (MQ=255)
                                                 aaTTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGTCCGCGTTTAACTCCTCTTCCACCATATCCAg                                        >  2:6038900/1‑93 (MQ=255)
                                                       cAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTtcatc                                  <  1:4660223/93‑1 (MQ=255)
                                                        aGCGGCTGCGATGGTAAACGTAATCCCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTtcatcc                                 >  1:5719646/1‑92 (MQ=255)
                                                        aGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTtcatca                                 >  1:401581/1‑93 (MQ=255)
                                                        aGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTtcatca                                 >  1:5592227/1‑93 (MQ=255)
                                                        aGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTtcatca                                 <  1:3319893/93‑1 (MQ=255)
                                                          cGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACg                               >  1:2737488/1‑93 (MQ=255)
                                                           ggCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGc                              >  1:2785698/1‑93 (MQ=255)
                                                           ggCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGc                              <  2:419761/93‑1 (MQ=255)
                                                            gCTGCGATGGTAAACGTAATACCCAGGCGTAAACTACCTGTTCAATCGAGCACGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCa                             >  1:3859578/1‑93 (MQ=255)
                                                            gCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCa                             >  2:4438204/1‑93 (MQ=255)
                                                            gCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCa                             <  2:1344454/93‑1 (MQ=255)
                                                             cTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAg                            <  2:2042219/93‑1 (MQ=255)
                                                             cTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAg                            <  1:2830081/93‑1 (MQ=255)
                                                             cTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAg                            >  2:4863756/1‑93 (MQ=255)
                                                               gCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCg                          >  2:3460066/1‑93 (MQ=255)
                                                               gCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCg                          <  1:1048983/93‑1 (MQ=255)
                                                                 gATGGTAAACGTAATACCCAGGCTTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGc                        <  2:5246295/93‑1 (MQ=255)
                                                                 gATGGTAAACGTAATACCCAGGCGTAATCCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGc                        <  1:2530511/93‑1 (MQ=255)
                                                                 gATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGc                        >  1:1333246/1‑93 (MQ=255)
                                                                  aTGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCt                       >  2:2856799/1‑93 (MQ=255)
                                                                   tGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTg                      <  1:98233/93‑1 (MQ=255)
                                                                   tGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTg                      >  1:1859363/1‑93 (MQ=255)
                                                                    ggTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTgg                     >  2:2792951/1‑93 (MQ=255)
                                                                    ggTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTgg                     >  1:5918465/1‑93 (MQ=255)
                                                                     gTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGa                    <  1:1263892/93‑1 (MQ=255)
                                                                     gTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGa                    >  1:3356841/1‑93 (MQ=255)
                                                                      tAAACGTAATACCCAGGCGTAACCCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTCCCACAAAAGCCAGTTCATCACGCAGCGGCTGGaa                   >  2:5142396/1‑93 (MQ=255)
                                                                      tAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGaa                   <  1:1705716/93‑1 (MQ=255)
                                                                      tAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGaa                   <  1:2176282/93‑1 (MQ=255)
                                                                        aaCGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGATTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGgaaa                 >  2:5559417/1‑92 (MQ=255)
                                                                         aCGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAaata                <  1:6306056/93‑1 (MQ=255)
                                                                          cGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAaataa               >  2:5648738/1‑93 (MQ=255)
                                                                           gTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAaataat              <  1:2220888/93‑1 (MQ=255)
                                                                           gTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAaataat              <  1:4134917/93‑1 (MQ=255)
                                                                            tAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatc             >  1:6070789/1‑93 (MQ=255)
                                                                             aaTACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatca            <  2:636314/93‑1 (MQ=255)
                                                                               tACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatcatc          >  1:15455/1‑93 (MQ=255)
                                                                               tACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAatcatc          >  2:3028214/1‑93 (MQ=255)
                                                                                aCCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAAtcatca         >  2:401654/1‑93 (MQ=255)
                                                                                 cccAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATcatcat        <  1:5769761/93‑1 (MQ=255)
                                                                                  ccAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCAtt       >  2:3774419/1‑93 (MQ=255)
                                                                                   cAGGCGTAAACCACC‑GTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaa     <  2:4761724/93‑1 (MQ=255)
                                                                                    aGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaa     <  1:3109531/93‑1 (MQ=255)
                                                                                    aGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaa     >  2:1741295/1‑93 (MQ=255)
                                                                                    aGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaa     >  2:3768892/1‑93 (MQ=255)
                                                                                     tgCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaaa    <  1:6208540/92‑1 (MQ=255)
                                                                                     ggCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaaa    <  1:2091284/93‑1 (MQ=255)
                                                                                     ggCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTaaa    >  2:788095/1‑93 (MQ=255)
                                                                                      gCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAAc   <  1:4227345/93‑1 (MQ=255)
                                                                                          |                                                                                         
TTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTTAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACA  >  NC_000913/1722828‑1723007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTTAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGACG  >  NC_000913/1722827‑1723011
                                                                                           |                                                                                             
GTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA                                                                                             >  SRR4302533.6060464/1‑94 (MQ=60)
GTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA                                                                                             >  SRR4302533.6039993/1‑94 (MQ=60)
GTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA                                                                                             >  SRR4302533.4099873/1‑94 (MQ=60)
GTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAA                                                                                             >  SRR4302533.2083753/1‑94 (MQ=60)
 TTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAAC                                                                                            >  SRR4302533.5916828/1‑94 (MQ=60)
      GCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCT                                                                                       <  SRR4302533.1757239/94‑1 (MQ=60)
      GCTTCGACAGCTGCCCGTACGCGCTCAATTTGACCTGAACCGATAATTGGCAGCGGCTGCGATAGTAAACGTAATACCCAGGCGTAAACCACCT                                                                                       <  SRR4302533.5952052/94‑1 (MQ=60)
       CTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTG                                                                                      >  SRR4302533.2321713/1‑94 (MQ=60)
       CTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTG                                                                                      >  SRR4302533.5273383/1‑94 (MQ=60)
           GACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCA                                                                                  >  SRR4302533.2490941/1‑94 (MQ=60)
             CAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAAT                                                                                <  SRR4302533.3281416/94‑1 (MQ=60)
                 TGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAG                                                                            >  SRR4302533.833103/1‑94 (MQ=60)
                 TGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAG                                                                            <  SRR4302533.2802459/94‑1 (MQ=60)
                 TGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAG                                                                            <  SRR4302533.2505778/94‑1 (MQ=60)
                 TGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAG                                                                            <  SRR4302533.4709350/94‑1 (MQ=60)
                  GCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATCCCCAGGCGTAAACCACCTGTTCAATCGAGC                                                                           <  SRR4302533.5940872/94‑1 (MQ=60)
                  GCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGC                                                                           >  SRR4302533.2387941/1‑94 (MQ=60)
                   CCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCC                                                                          <  SRR4302533.2050661/94‑1 (MQ=60)
                    CCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCC                                                                         >  SRR4302533.4334300/1‑94 (MQ=60)
                     CGTACGCGCTCCATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGGTCAATCGAGCCCC                                                                        >  SRR4302533.4332573/1‑94 (MQ=60)
                     CGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCG                                                                        >  SRR4302533.4490702/1‑94 (MQ=60)
                      GTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGC                                                                       >  SRR4302533.2724333/1‑94 (MQ=60)
                       TACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCG                                                                      <  SRR4302533.5219228/94‑1 (MQ=60)
                         CGCGCTCAATTTTCCCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTT                                                                    <  SRR4302533.4005956/94‑1 (MQ=60)
                          GCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTT                                                                   <  SRR4302533.2688268/94‑1 (MQ=60)
                          GCGCTCAATTTTACCTGAACCGATAATTGGCAGAGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTT                                                                   >  SRR4302533.2110802/1‑94 (MQ=60)
                           CGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGCGCCCGCGATTA                                                                  >  SRR4302533.478061/1‑94 (MQ=60)
                           CGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTA                                                                  >  SRR4302533.4015004/1‑94 (MQ=60)
                            GCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAA                                                                 >  SRR4302533.2691000/1‑94 (MQ=60)
                             CTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAC                                                                >  SRR4302533.5412260/1‑94 (MQ=60)
                             CTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAC                                                                >  SRR4302533.220588/1‑94 (MQ=60)
                             CTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAAC                                                                >  SRR4302533.3450579/1‑94 (MQ=60)
                              TCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACT                                                               <  SRR4302533.1279545/94‑1 (MQ=60)
                              TCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACT                                                               <  SRR4302533.2408969/94‑1 (MQ=60)
                              TCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACT                                                               >  SRR4302533.5073858/1‑94 (MQ=60)
                                AATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCC                                                             <  SRR4302533.4009774/94‑1 (MQ=60)
                                 ATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCT                                                            >  SRR4302533.392134/1‑94 (MQ=60)
                                 ATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTCTAACTCCT                                                            >  SRR4302533.5583003/1‑94 (MQ=60)
                                   TTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCT                                                          <  SRR4302533.1474559/94‑1 (MQ=60)
                                   TTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCT                                                          <  SRR4302533.5651717/94‑1 (MQ=60)
                                     TACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGC                                                        >  SRR4302533.5945351/1‑94 (MQ=60)
                                     TACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGC                                                        >  SRR4302533.5816380/1‑94 (MQ=60)
                                      ACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCC                                                       <  SRR4302533.3356356/94‑1 (MQ=60)
                                      ACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCC                                                       >  SRR4302533.993567/1‑94 (MQ=60)
                                       CCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAATCCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCA                                                      <  SRR4302533.6055694/94‑1 (MQ=60)
                                       CCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCA                                                      >  SRR4302533.3429868/1‑94 (MQ=60)
                                       CCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCA                                                      >  SRR4302533.5716896/1‑94 (MQ=60)
                                         CGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACC                                                    <  SRR4302533.4231575/94‑1 (MQ=60)
                                            ACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACA                                                 <  SRR4302533.5920478/94‑1 (MQ=60)
                                            ACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACA                                                 <  SRR4302533.1727815/94‑1 (MQ=60)
                                             CCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACAACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAG                                                <  SRR4302533.3404107/94‑1 (MQ=60)
                                              CGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGC                                               >  SRR4302533.1950452/1‑94 (MQ=60)
                                                ATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCA                                             <  SRR4302533.5954935/94‑1 (MQ=60)
                                                 TAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAG                                            <  SRR4302533.207071/94‑1 (MQ=60)
                                                 TAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAG                                            <  SRR4302533.2520778/94‑1 (MQ=60)
                                                   ATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTT                                          >  SRR4302533.2664075/1‑94 (MQ=60)
                                                      GGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCAT                                       <  SRR4302533.1532711/94‑1 (MQ=60)
                                                        CAGCGGCTGCGATGGTAAACGTAATCCCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCC                                     >  SRR4302533.5754182/1‑94 (MQ=60)
                                                        CAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCA                                     >  SRR4302533.5626008/1‑94 (MQ=60)
                                                        CAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCA                                     >  SRR4302533.404004/1‑94 (MQ=60)
                                                        CAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCA                                     <  SRR4302533.4688465/94‑1 (MQ=60)
                                                         AGCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCAC                                    <  SRR4302533.3340399/94‑1 (MQ=60)
                                                          GCGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACG                                   >  SRR4302533.2754275/1‑94 (MQ=60)
                                                           CGGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGC                                  >  SRR4302533.2802814/1‑94 (MQ=60)
                                                            GGCTGCGATGGTAAACGTAATACCCAGGCGTAAACTACCTGTTCAATCGAGCACGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCA                                 >  SRR4302533.3883142/1‑94 (MQ=60)
                                                            GGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCA                                 >  SRR4302533.1572285/1‑94 (MQ=60)
                                                            GGCTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCA                                 >  SRR4302533.2840166/1‑94 (MQ=60)
                                                              CTGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGC                               <  SRR4302533.2847498/94‑1 (MQ=60)
                                                               TGCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCG                              <  SRR4302533.5919313/94‑1 (MQ=60)
                                                                GCGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGG                             <  SRR4302533.1055151/94‑1 (MQ=60)
                                                                 CGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGC                            >  SRR4302533.1341249/1‑94 (MQ=60)
                                                                 CGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGC                            <  SRR4302533.17938/94‑1 (MQ=60)
                                                                 CGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGC                            >  SRR4302533.2994579/1‑94 (MQ=60)
                                                                 CGATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGC                            >  SRR4302533.3388999/1‑94 (MQ=60)
                                                                 CGATGGTAAACGTAATACCCAAGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGACCGTTCATCACGCAGCGGC                            >  SRR4302533.4308248/1‑94 (MQ=60)
                                                                  GATGGTAAACGTAATACCCAGGCGTAATCCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCT                           <  SRR4302533.2546090/94‑1 (MQ=60)
                                                                   ATGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTG                          >  SRR4302533.1870706/1‑94 (MQ=60)
                                                                    TGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGG                         <  SRR4302533.98842/94‑1 (MQ=60)
                                                                    TGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGG                         >  SRR4302533.5954233/1‑94 (MQ=60)
                                                                    TGGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGG                         <  SRR4302533.4474460/94‑1 (MQ=60)
                                                                     GGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGA                        <  SRR4302533.2390950/94‑1 (MQ=60)
                                                                     GGTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGA                        >  SRR4302533.3377583/1‑94 (MQ=60)
                                                                      GTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAA                       <  SRR4302533.1271455/94‑1 (MQ=60)
                                                                      GTAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAA                       >  SRR4302533.79602/1‑94 (MQ=60)
                                                                       TAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAA                      <  SRR4302533.1716048/94‑1 (MQ=60)
                                                                       TAAACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAA                      <  SRR4302533.2189697/94‑1 (MQ=60)
                                                                          ACGTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAA                   <  SRR4302533.6343810/94‑1 (MQ=60)
                                                                            GTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATC                 <  SRR4302533.2234597/94‑1 (MQ=60)
                                                                            GTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATC                 >  SRR4302533.6107520/1‑94 (MQ=60)
                                                                            GTAATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATC                 <  SRR4302533.4160014/94‑1 (MQ=60)
                                                                               ATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATC              >  SRR4302533.15564/1‑94 (MQ=60)
                                                                               ATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATC              >  SRR4302533.6190250/1‑94 (MQ=60)
                                                                               ATACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATC              >  SRR4302533.5749026/1‑94 (MQ=60)
                                                                                 ACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATNATCATCAT            <  SRR4302533.3575127/94‑1 (MQ=60)
                                                                                 ACCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCAT            >  SRR4302533.6334568/1‑94 (MQ=60)
                                                                                  CCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATT           <  SRR4302533.5804596/94‑1 (MQ=60)
                                                                                  CCCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATT           >  SRR4302533.1374409/1‑94 (MQ=60)
                                                                                   CCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTA          >  SRR4302533.4523427/1‑94 (MQ=60)
                                                                                   CCAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTA          >  SRR4302533.2689620/1‑94 (MQ=60)
                                                                                    CAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAA         >  SRR4302533.6080479/1‑94 (MQ=60)
                                                                                    CAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAA         >  SRR4302533.4024069/1‑94 (MQ=60)
                                                                                    CAGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAA         >  SRR4302533.126036/1‑94 (MQ=60)
                                                                                     AGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATCATCATCATTAAA        >  SRR4302533.953638/1‑94 (MQ=60)
                                                                                     AGGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAA        <  SRR4302533.3128644/94‑1 (MQ=60)
                                                                                      TGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAAC       <  SRR4302533.6245780/94‑1 (MQ=60)
                                                                                      GGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAAC       >  SRR4302533.2086143/1‑94 (MQ=60)
                                                                                      GGCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAAC       <  SRR4302533.2104165/94‑1 (MQ=60)
                                                                                       GCGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACA      <  SRR4302533.4252905/94‑1 (MQ=60)
                                                                                        CGTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAG     <  SRR4302533.5788841/94‑1 (MQ=60)
                                                                                         GTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGTAATAATCATCATTAAACAGA    <  SRR4302533.105425/94‑1 (MQ=60)
                                                                                         GTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGA    >  SRR4302533.4921030/1‑94 (MQ=60)
                                                                                         GTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGA    <  SRR4302533.56530/94‑1 (MQ=60)
                                                                                         GTAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGA    <  SRR4302533.571726/94‑1 (MQ=60)
                                                                                          TAAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGAC   <  SRR4302533.2613891/94‑1 (MQ=60)
                                                                                           AAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGACG  <  SRR4302533.3887950/94‑1 (MQ=60)
                                                                                           AAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGACG  >  SRR4302533.5871649/1‑94 (MQ=60)
                                                                                           AAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGACA  >  SRR4302533.5117804/1‑94 (MQ=60)
                                                                                           |                                                                                             
GTTTCTGCTTCGACAGCTGCCCGTACGCGCTCAATTTTACCTGAACCGATAATTGGCAGCGGCTGCGATGGTAAACGTAATACCCAGGCGTTAACCACCTGTTCAATCGAGCCCGCGTTTAACTCCTCTGCCACCACAGCCAGTTCATCACGCAGCGGCTGGAAATAATCATCATTAAACAGACG  >  NC_000913/1722827‑1723011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑