Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,723,479 A→G C60R (TGC→CGC)  b1647 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,723,4790AG100.0% 676.3 / NA 209C60R (TGC→CGC) b1647hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (101/108);  total (101/108)

Only 100 of 218 total aligned reads displayed.

CGGTCGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCACTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTGGCGGGC  >  NC_000913/1723389‑1723566
                                                                                          |                                                                                       
cgGTCGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCt                                                                                       <  2:4946410/93‑1 (MQ=255)
    cgtcgCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATa                                                                                   <  2:2206507/93‑1 (MQ=255)
    cgtcgCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATa                                                                                   <  1:3232301/93‑1 (MQ=255)
     gtcgCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAg                                                                                  <  1:1091318/93‑1 (MQ=255)
     gtcgCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAg                                                                                  >  1:3569316/1‑93 (MQ=255)
      tcgCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGc                                                                                 >  1:1842294/1‑93 (MQ=255)
      tcgCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGc                                                                                 >  2:3804351/1‑93 (MQ=255)
        gcgATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGcca                                                                               >  2:1985174/1‑93 (MQ=255)
        gcgATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGcca                                                                               <  1:5711382/93‑1 (MQ=255)
          gATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGccacc                                                                             <  1:5821251/93‑1 (MQ=255)
          gATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGccacc                                                                             >  2:4911235/1‑93 (MQ=255)
          gATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGccacc                                                                             >  1:5893285/1‑93 (MQ=255)
           aTACCGCATTTACTGACGATTTTCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCTCCCGCCGCTCCGCGCTGATAGccacca                                                                            >  1:4079958/1‑93 (MQ=255)
           aTACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGccacca                                                                            <  2:307787/93‑1 (MQ=255)
            tACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCAt                                                                           >  2:5283333/1‑93 (MQ=255)
             atcGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCCCGCTGCTAGCCCCCCTa                                                                          >  2:3974972/3‑93 (MQ=255)
               cGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATaaa                                                                        <  2:2485830/93‑1 (MQ=255)
                gCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAat                                                                       >  1:806338/1‑93 (MQ=255)
                 cATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAata                                                                      <  1:3027102/93‑1 (MQ=255)
                  aTTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAatat                                                                     >  2:1272228/1‑93 (MQ=255)
                  aTTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAatat                                                                     >  1:980924/1‑93 (MQ=255)
                   tttACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATc                                                                    >  2:415775/1‑93 (MQ=255)
                   tttACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATc                                                                    <  2:2839660/93‑1 (MQ=255)
                   tttACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATc                                                                    >  2:1958031/1‑93 (MQ=255)
                   tttACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATc                                                                    <  1:5563248/93‑1 (MQ=255)
                    ttACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCa                                                                   <  2:1838012/93‑1 (MQ=255)
                    ttACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCa                                                                   >  1:266541/1‑93 (MQ=255)
                       cTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAgga                                                                <  2:1444759/93‑3 (MQ=255)
                       cTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCa                                                                >  1:3501939/1‑93 (MQ=255)
                       cTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCa                                                                <  1:4209230/93‑1 (MQ=255)
                       atGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCa                                                                <  1:5104825/92‑1 (MQ=255)
                        tGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCAt                                                               <  1:6046511/93‑1 (MQ=255)
                        tGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCAt                                                               <  2:5862598/93‑1 (MQ=255)
                        tGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCAt                                                               <  1:5239889/93‑1 (MQ=255)
                          aCGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATgg                                                             >  1:2967394/1‑93 (MQ=255)
                           cGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGt                                                            >  1:3710466/1‑93 (MQ=255)
                            gATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTc                                                           <  2:292327/93‑1 (MQ=255)
                             aTTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTcc                                                          <  2:3602211/93‑1 (MQ=255)
                              tttCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCa                                                         >  2:5891973/1‑93 (MQ=255)
                              tttCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCa                                                         <  2:3269970/93‑1 (MQ=255)
                                tCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACg                                                       >  1:2246259/1‑93 (MQ=255)
                                 ccATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACgg                                                      >  1:156459/1‑93 (MQ=255)
                                 ccATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACgg                                                      >  1:2860397/1‑93 (MQ=255)
                                 ccATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACgg                                                      <  1:1266322/93‑1 (MQ=255)
                                  cATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACggt                                                     <  2:2735761/93‑1 (MQ=255)
                                  cATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACggt                                                     <  1:6015690/93‑1 (MQ=255)
                                    tCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACggtgg                                                   <  1:5496790/93‑1 (MQ=255)
                                    tCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACggtgg                                                   <  1:2051646/93‑1 (MQ=255)
                                     ccGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACggtggt                                                  <  1:2704831/93‑1 (MQ=255)
                                     ccGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACggtggt                                                  <  2:342426/93‑1 (MQ=255)
                                      cGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTc                                                 <  2:6099055/93‑1 (MQ=255)
                                        ttCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCAc                                               >  1:3446363/1‑93 (MQ=255)
                                          cACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGc                                             <  1:3638589/93‑1 (MQ=255)
                                            cGCAGGTGAGGCGCCAGTTTCAGTGCCTCGCCAAACGGCGCTTCGGGCTGATAGCCACCATCAATATCAGCATGGTCCACCGTGGGCACGCCg                                           >  2:1666067/1‑93 (MQ=255)
                                             gCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCga                                          <  1:3748671/93‑1 (MQ=255)
                                                ggtgaggtgCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGAt                                       >  1:3118467/1‑93 (MQ=255)
                                                ggtgaggtgCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGAt                                       <  1:2022663/93‑1 (MQ=255)
                                                 gtgaggtgCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATc                                      >  2:5672612/1‑93 (MQ=255)
                                                   gaggtgCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCa                                    <  1:1015412/93‑1 (MQ=255)
                                                   gaggtgCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCa                                    <  1:4910464/93‑1 (MQ=255)
                                                      gtgCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGAt                                 >  1:3315805/1‑93 (MQ=255)
                                                      gtgCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGAt                                 >  2:499097/1‑93 (MQ=255)
                                                      gtgCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGAt                                 <  2:5551498/93‑1 (MQ=255)
                                                        gCCATTTTCATTGCCTCGCCAAACGCCTCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGc                               <  2:4583994/93‑1 (MQ=255)
                                                        gCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGc                               >  1:4726338/1‑93 (MQ=255)
                                                        gCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGc                               <  1:1670907/93‑1 (MQ=255)
                                                           aGTTTCTGGGGCTCGCTAAACGCCGTTTCGCGCTGATAGCCCCCATAAATACCATCATGGTCCACGGTGGTCACGCCGAGATCCAGATGctct                            <  2:2374626/93‑1 (MQ=255)
                                                            gTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCtt                           >  2:2308808/1‑93 (MQ=255)
                                                            gTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCtt                           >  1:2292527/1‑93 (MQ=255)
                                                            gTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCtt                           <  2:2583543/93‑1 (MQ=255)
                                                             tttCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTc                          >  1:5787078/1‑93 (MQ=255)
                                                              ttCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCa                         >  2:4066895/1‑93 (MQ=255)
                                                               tCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCaa                        >  1:5057882/1‑93 (MQ=255)
                                                                cAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAAt                       >  2:3898762/1‑93 (MQ=255)
                                                                 aGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATa                      <  1:4137828/93‑1 (MQ=255)
                                                                 aGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATa                      <  1:2213043/93‑1 (MQ=255)
                                                                  gTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATaa                     >  2:4777066/1‑93 (MQ=255)
                                                                  gTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATaa                     <  1:2619104/93‑1 (MQ=255)
                                                                    gCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATaaaa                   <  1:3351642/93‑1 (MQ=255)
                                                                     ccTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATCTCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAAc                  <  1:2388451/93‑1 (MQ=255)
                                                                     ccTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAAc                  >  2:4459171/1‑93 (MQ=255)
                                                                      cTCGCCAAACGCCGCTTCTCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACt                 <  1:4775157/93‑1 (MQ=255)
                                                                       tCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTg                >  2:5599524/1‑93 (MQ=255)
                                                                       tCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTg                >  1:6261220/1‑93 (MQ=255)
                                                                       tCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTg                >  1:4379686/1‑93 (MQ=255)
                                                                        cGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGa               <  2:3245682/93‑1 (MQ=255)
                                                                        cGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGa               <  1:3542160/93‑1 (MQ=255)
                                                                        cGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGa               <  2:6235447/93‑1 (MQ=255)
                                                                           cAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCa            <  1:758450/93‑1 (MQ=255)
                                                                           cAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCa            <  1:3815467/93‑1 (MQ=255)
                                                                             aaCGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGc          >  2:2998459/1‑93 (MQ=255)
                                                                             aaCGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGc          <  1:4556139/93‑1 (MQ=255)
                                                                              aCGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCt         <  1:2476945/93‑1 (MQ=255)
                                                                               cgccgcTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTg        <  1:897150/93‑1 (MQ=255)
                                                                               cgccgcTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTg        <  2:806338/93‑1 (MQ=255)
                                                                                gccgcTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTgg       >  2:1380101/1‑93 (MQ=255)
                                                                                gccgcTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTgg       >  2:5785655/1‑93 (MQ=255)
                                                                                  cgcTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTggcg     >  2:5017763/1‑93 (MQ=255)
                                                                                   gcTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTggcgg    >  2:1061677/1‑93 (MQ=255)
                                                                                     ttCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTggcgggc  >  2:4836351/1‑93 (MQ=255)
                                                                                          |                                                                                       
CGGTCGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCACTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTGGCGGGC  >  NC_000913/1723389‑1723566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCGGTCGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCACTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTGGCGGGCGGACA  >  NC_000913/1723388‑1723571
                                                                                           |                                                                                            
GCGGTCGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCT                                                                                            <  SRR4302533.2467343/94‑1 (MQ=60)
GCGGTCGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCT                                                                                            <  SRR4302533.394194/94‑1 (MQ=60)
 CGGTCGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTG                                                                                           <  SRR4302533.4350869/94‑1 (MQ=60)
   GTCGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGAT                                                                                         >  SRR4302533.1132986/1‑94 (MQ=60)
     CGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAG                                                                                       >  SRR4302533.3664206/1‑94 (MQ=60)
     CGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAG                                                                                       <  SRR4302533.5842850/94‑1 (MQ=60)
     CGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAG                                                                                       >  SRR4302533.3591316/1‑94 (MQ=60)
     CGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAG                                                                                       >  SRR4302533.2041222/1‑94 (MQ=60)
     CGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAG                                                                                       <  SRR4302533.3252219/94‑1 (MQ=60)
      GTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGC                                                                                      <  SRR4302533.1097765/94‑1 (MQ=60)
      GTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGC                                                                                      >  SRR4302533.1853528/1‑94 (MQ=60)
         GCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCAC                                                                                   <  SRR4302533.5745881/94‑1 (MQ=60)
          CGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACC                                                                                  >  SRR4302533.5928881/1‑94 (MQ=60)
           GATACCGCATTTACTGACGATTTTCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCTCCCGCCGCTCCGCGCTGATAGCCACCA                                                                                 >  SRR4302533.4104794/1‑94 (MQ=60)
           GATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCA                                                                                 <  SRR4302533.5856414/94‑1 (MQ=60)
            ATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCAT                                                                                >  SRR4302533.3657301/1‑94 (MQ=60)
            ATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCAT                                                                                >  SRR4302533.2430438/1‑94 (MQ=60)
             taactCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATA                                                                               <  SRR4302533.735306/89‑1 (MQ=60)
             TACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATA                                                                               <  SRR4302533.2431708/94‑1 (MQ=60)
              ACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAA                                                                              >  SRR4302533.570920/1‑94 (MQ=60)
              ACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAA                                                                              >  SRR4302533.2840341/1‑94 (MQ=60)
               CCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAA                                                                             >  SRR4302533.6025433/1‑94 (MQ=60)
                CGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAAT                                                                            <  SRR4302533.5086259/94‑1 (MQ=60)
                CGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAAT                                                                            >  SRR4302533.989564/1‑94 (MQ=60)
                CGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAAT                                                                            >  SRR4302533.2344897/1‑94 (MQ=60)
                CGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAAT                                                                            >  SRR4302533.811075/1‑94 (MQ=60)
                CGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAAT                                                                            >  SRR4302533.1871629/1‑94 (MQ=60)
                 GCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGTTGCCAGTTTCAGCGCCTCGCCGAACGCCGCTTCGCGCTGATAGCTACGATAAATA                                                                           >  SRR4302533.39389/1‑94 (MQ=60)
                  CATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATAT                                                                          >  SRR4302533.3415576/1‑94 (MQ=60)
                  CATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATAT                                                                          >  SRR4302533.986676/1‑94 (MQ=60)
                  CATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATAT                                                                          <  SRR4302533.3045628/94‑1 (MQ=60)
                    TTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCA                                                                        >  SRR4302533.268161/1‑94 (MQ=60)
                    TTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCA                                                                        <  SRR4302533.5596873/94‑1 (MQ=60)
                      TACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGA                                                                      <  SRR4302533.4994003/94‑1 (MQ=60)
                       TCTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCA                                                                     <  SRR4302533.6128616/94‑1 (MQ=60)
                       ACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCA                                                                     >  SRR4302533.3523533/1‑94 (MQ=60)
                        CTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCAT                                                                    <  SRR4302533.4234694/94‑1 (MQ=60)
                        CTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCAT                                                                    >  SRR4302533.4929571/1‑94 (MQ=60)
                        CTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGACGCTTCGAGCTGATAGCCACCATAAATATCAGCAG                                                                    >  SRR4302533.5921131/1‑94 (MQ=60)
                        ATGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCAT                                                                    <  SRR4302533.5135663/94‑1 (MQ=60)
                         TGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATG                                                                   <  SRR4302533.6083142/94‑1 (MQ=60)
                         TGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATG                                                                   <  SRR4302533.5271392/94‑1 (MQ=60)
                          GACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGG                                                                  >  SRR4302533.2985533/1‑94 (MQ=60)
                          GACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGG                                                                  <  SRR4302533.4362632/94‑1 (MQ=60)
                          GACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGG                                                                  <  SRR4302533.2605249/94‑1 (MQ=60)
                           ACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGT                                                                 >  SRR4302533.3733254/1‑94 (MQ=60)
                            CGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTC                                                                <  SRR4302533.5760662/94‑1 (MQ=60)
                             GATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCC                                                               >  SRR4302533.3336565/1‑94 (MQ=60)
                             GATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCC                                                               >  SRR4302533.2243212/1‑94 (MQ=60)
                              ATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCA                                                              >  SRR4302533.291271/1‑94 (MQ=60)
                               TTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCAC                                                             <  SRR4302533.374660/94‑1 (MQ=60)
                               TTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCAC                                                             <  SRR4302533.5075823/94‑1 (MQ=60)
                                TTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACG                                                            >  SRR4302533.2260139/1‑94 (MQ=60)
                                TTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACG                                                            >  SRR4302533.5477179/1‑94 (MQ=60)
                                 TCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGG                                                           >  SRR4302533.157456/1‑94 (MQ=60)
                                 TCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGG                                                           >  SRR4302533.2877994/1‑94 (MQ=60)
                                  CCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGT                                                          <  SRR4302533.1273899/94‑1 (MQ=60)
                                  CCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGT                                                          <  SRR4302533.3062623/94‑1 (MQ=60)
                                   CATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTG                                                         <  SRR4302533.6052144/94‑1 (MQ=60)
                                     TCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGT                                                       <  SRR4302533.5529944/94‑1 (MQ=60)
                                     TCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGT                                                       <  SRR4302533.2064306/94‑1 (MQ=60)
                                      CCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTC                                                      <  SRR4302533.2721423/94‑1 (MQ=60)
                                       CGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCA                                                     >  SRR4302533.4534607/1‑94 (MQ=60)
                                        GTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCAC                                                    >  SRR4302533.3467645/1‑94 (MQ=60)
                                         TTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACG                                                   >  SRR4302533.6082303/1‑94 (MQ=60)
                                           CACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCC                                                 <  SRR4302533.3660960/94‑1 (MQ=60)
                                           CACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCC                                                 >  SRR4302533.3576241/1‑94 (MQ=60)
                                             CGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGA                                               <  SRR4302533.3808615/94‑1 (MQ=60)
                                              GCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAG                                              <  SRR4302533.3771650/94‑1 (MQ=60)
                                                AGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGAT                                            >  SRR4302533.3137643/1‑94 (MQ=60)
                                                 GGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGTCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATC                                           <  SRR4302533.3402427/94‑1 (MQ=60)
                                                 GGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATC                                           <  SRR4302533.2035120/94‑1 (MQ=60)
                                                 GGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATC                                           <  SRR4302533.3148402/94‑1 (MQ=60)
                                                  GTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCC                                          <  SRR4302533.5775591/94‑1 (MQ=60)
                                                   TGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCA                                         >  SRR4302533.2265146/1‑94 (MQ=60)
                                                    GAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAG                                        <  SRR4302533.1021377/94‑1 (MQ=60)
                                                    GAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAG                                        <  SRR4302533.4940211/94‑1 (MQ=60)
                                                      GGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGAT                                      <  SRR4302533.3697163/94‑1 (MQ=60)
                                                      GGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGAT                                      >  SRR4302533.3336279/1‑94 (MQ=60)
                                                       GTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATG                                     <  SRR4302533.3487475/94‑1 (MQ=60)
                                                        TGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGC                                    <  SRR4302533.4161297/94‑1 (MQ=60)
                                                        TGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGC                                    >  SRR4302533.4754993/1‑94 (MQ=60)
                                                         GCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCT                                   <  SRR4302533.1681007/94‑1 (MQ=60)
                                                           CAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCT                                 <  SRR4302533.6296726/94‑1 (MQ=60)
                                                           CAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCT                                 >  SRR4302533.304407/1‑94 (MQ=60)
                                                            AGTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTT                                >  SRR4302533.2306720/1‑94 (MQ=60)
                                                             GTTTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTC                               >  SRR4302533.5822038/1‑94 (MQ=60)
                                                               TTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAA                             >  SRR4302533.5088448/1‑94 (MQ=60)
                                                               TTCAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAA                             >  SRR4302533.5088449/1‑94 (MQ=60)
                                                                 CAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATA                           <  SRR4302533.472995/94‑1 (MQ=60)
                                                                 CAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATA                           <  SRR4302533.4164065/94‑1 (MQ=60)
                                                                 CAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATA                           >  SRR4302533.634296/1‑94 (MQ=60)
                                                                 CAGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATA                           >  SRR4302533.3284226/1‑94 (MQ=60)
                                                                  AGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAA                          <  SRR4302533.2226697/94‑1 (MQ=60)
                                                                  AGTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAA                          <  SRR4302533.4162932/94‑1 (MQ=60)
                                                                   GTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAA                         <  SRR4302533.1058000/94‑1 (MQ=60)
                                                                   GTGCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAA                         <  SRR4302533.2635182/94‑1 (MQ=60)
                                                                     GCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAAC                       <  SRR4302533.3372346/94‑1 (MQ=60)
                                                                     GCCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAAC                       <  SRR4302533.836391/94‑1 (MQ=60)
                                                                      CCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATCTCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACT                      <  SRR4302533.2403206/94‑1 (MQ=60)
                                                                      CCTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACT                      >  SRR4302533.921706/1‑94 (MQ=60)
                                                                       CTCGCCAAACGCCGCTTCTCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTG                     <  SRR4302533.4804087/94‑1 (MQ=60)
                                                                       CTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTG                     >  SRR4302533.4406128/1‑94 (MQ=60)
                                                                       CTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTG                     >  SRR4302533.1632312/1‑94 (MQ=60)
                                                                       CTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTG                     >  SRR4302533.5152431/1‑94 (MQ=60)
                                                                       CTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTG                     <  SRR4302533.80628/94‑1 (MQ=60)
                                                                       CTCGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTG                     >  SRR4302533.6298654/1‑94 (MQ=60)
                                                                        TCGCCAAACGCCGCTTCGCGCTGAGAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGA                    <  SRR4302533.1488507/94‑1 (MQ=60)
                                                                         CGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGAC                   <  SRR4302533.3563989/94‑1 (MQ=60)
                                                                         CGCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGAC                   <  SRR4302533.2115382/94‑1 (MQ=60)
                                                                          GCCAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACC                  <  SRR4302533.5590312/94‑1 (MQ=60)
                                                                            CAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAG                <  SRR4302533.3838797/94‑1 (MQ=60)
                                                                            CAAACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAG                <  SRR4302533.762915/94‑1 (MQ=60)
                                                                              AACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCT              <  SRR4302533.4583772/94‑1 (MQ=60)
                                                                               ACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTG             <  SRR4302533.2696501/94‑1 (MQ=60)
                                                                               ACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTG             <  SRR4302533.4785147/94‑1 (MQ=60)
                                                                               ACGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTG             <  SRR4302533.2492221/94‑1 (MQ=60)
                                                                                CGCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTGG            <  SRR4302533.902415/94‑1 (MQ=60)
                                                                                 GCCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTGGC           >  SRR4302533.2666721/1‑94 (MQ=60)
                                                                                  CCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTGGCG          <  SRR4302533.1813952/94‑1 (MQ=60)
                                                                                  CCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTGGCG          <  SRR4302533.1921042/94‑1 (MQ=60)
                                                                                  CCGCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTGGCG          <  SRR4302533.3535903/94‑1 (MQ=60)
                                                                                    GCTTCGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTGGCGGG        <  SRR4302533.2928002/94‑1 (MQ=60)
                                                                                        CGCGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTAACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTGGCGGGCGGA    >  SRR4302533.3408250/1‑94 (MQ=60)
                                                                                          CGCTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTGGCGGGCGGACA  >  SRR4302533.4578886/1‑94 (MQ=60)
                                                                                           |                                                                                            
GCGGTCGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGTGCCTCGCCAAACGCCGCTTCGCACTGATAGCCACCATAAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTGGCGGGCGGACA  >  NC_000913/1723388‑1723571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑