Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1548 |
369.5 |
20095359 |
96.9% |
19472402 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,725,518 |
(G)6→5 |
coding (836/1098 nt) |
nemA → |
N‑ethylmaleimide reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,725,513 | 0 | G | . | 98.1%
| 929.0
/ 5.6
| 213 | coding (831/1098 nt) | nemA | N‑ethylmaleimide reductase |
| Reads supporting (aligned to +/- strand): ref base G (3/1); new base . (109/100); total (112/101) |
| Fisher's exact test for biased strand distribution p-value = 6.23e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.49e-01 |
Only 100 of 250 total aligned reads displayed.
GGCCCGAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCGGGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAG > NC_000913/1725421‑1725601
|
ggCCCGAATGAAGAAACAGATGCACTGTATCTGATTGAACAACTGGGAAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCg < 2:8967015/93‑1 (MQ=255)
gCCCGAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCgg > 1:1012232/1‑93 (MQ=255)
gCCCGAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCgg < 1:3391251/93‑1 (MQ=255)
gCCCGAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCgg < 2:8647393/93‑1 (MQ=255)
cccGAATGAAGAAGCGGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCggg < 1:7380535/93‑1 (MQ=255)
ccGAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCgggg < 1:2707083/93‑1 (MQ=255)
gAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCgggggg > 1:605660/1‑93 (MQ=255)
aaTGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCgggggtg < 2:1199936/93‑3 (MQ=255)
aTGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGACCCAGATTGGGCgggggtga > 1:8776274/1‑90 (MQ=255)
aTGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCgggggtga > 1:2137510/1‑90 (MQ=255)
tGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCgggggtgaa > 2:6827872/1‑89 (MQ=255)
gaagaaGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAAc < 1:1812711/93‑1 (MQ=255)
agaagCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCg > 2:2843919/1‑93 (MQ=255)
gaagCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCGGGGGG‑GAACCGt > 2:2242977/1‑93 (MQ=255)
gaagCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGt > 2:1013782/1‑93 (MQ=255)
gaagCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGt > 1:7328028/1‑93 (MQ=255)
gaagCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGt < 2:9471854/93‑1 (MQ=255)
aagCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGta < 1:1650679/93‑1 (MQ=255)
aagCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGta < 2:5544783/93‑1 (MQ=255)
agCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGtat > 2:2382743/1‑93 (MQ=255)
gCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGtata < 2:1851647/93‑1 (MQ=255)
ccGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATAc < 1:7587490/93‑1 (MQ=255)
cGATGCACTGTATCTGATTGAACAACTGAGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACt < 2:5736788/93‑1 (MQ=255)
gATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTg > 1:6005980/1‑93 (MQ=255)
aTGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGa < 1:9674000/93‑1 (MQ=255)
aTGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGa < 2:6178792/93‑1 (MQ=255)
tGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGAt > 1:2566763/1‑93 (MQ=255)
gCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATg > 2:623882/1‑93 (MQ=255)
gCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATg > 1:8035336/1‑93 (MQ=255)
aCTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCg > 2:2960989/1‑93 (MQ=255)
aCTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCg > 1:7228814/1‑93 (MQ=255)
cTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGt > 2:4475500/1‑93 (MQ=255)
tGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGtt < 2:4391297/93‑1 (MQ=255)
tGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGtt > 1:3239508/1‑93 (MQ=255)
gTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTc > 2:6762523/1‑93 (MQ=255)
tATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTcc > 2:91851/1‑93 (MQ=255)
aTCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCcg > 1:1469641/1‑93 (MQ=255)
aTCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTAATGCGTTCcg > 2:5425359/1‑93 (MQ=255)
tGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGa > 2:5135755/1‑93 (MQ=255)
tGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGa > 2:4697808/1‑93 (MQ=255)
tGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGa > 1:9467655/1‑93 (MQ=255)
ttGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGaaaa > 2:3750681/1‑93 (MQ=255)
tGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGaaaaa < 2:4135401/93‑1 (MQ=255)
tGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGaaaaa < 2:8062640/93‑1 (MQ=255)
gAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAg < 1:1956605/93‑1 (MQ=255)
gAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAg > 1:8048875/1‑93 (MQ=255)
aacaacTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGt < 1:2300196/93‑1 (MQ=255)
acaacTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTa > 1:7817028/1‑93 (MQ=255)
acaacTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTa < 2:3426763/93‑1 (MQ=255)
acaacTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTa < 1:6606108/93‑1 (MQ=255)
acaacTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTa < 1:709835/93‑1 (MQ=255)
caacTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTAc < 1:8903654/93‑1 (MQ=255)
aacTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTAcg < 1:427112/93‑1 (MQ=255)
acTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTAcgc < 2:752107/93‑1 (MQ=255)
gggTAAACGCGGCATAGCTTCTCTGCATATGTCAGAACCCGATTGGGC‑GGGGGTGAACCGAATACTGATGCGTTCCGCGAAAAAGTACGCGcc > 2:1358587/1‑93 (MQ=255)
aaaCGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGtt < 1:875926/93‑1 (MQ=255)
aaCGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGttt < 2:6861256/93‑1 (MQ=255)
aCGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTc > 2:3557129/1‑93 (MQ=255)
aCGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTc > 1:6145360/1‑93 (MQ=255)
gcgGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCa < 2:4060120/93‑1 (MQ=255)
gCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACgg > 1:4485747/1‑93 (MQ=255)
gCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACgg < 2:3871458/93‑1 (MQ=255)
gCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACgg < 2:2719288/93‑1 (MQ=255)
cATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGt < 1:9041218/93‑1 (MQ=255)
cATGGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGt < 1:2901983/93‑1 (MQ=255)
aTTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTc > 1:2909074/1‑93 (MQ=255)
gCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGa < 1:8339746/93‑1 (MQ=255)
cTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGAt > 2:7215187/1‑93 (MQ=255)
cTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGAt < 1:9395818/93‑1 (MQ=255)
ttATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGAtt > 1:4903675/1‑93 (MQ=255)
ttATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGAtt > 1:8515027/1‑93 (MQ=255)
ttATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGAtt > 2:2650641/1‑93 (MQ=255)
ttATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGAtt > 1:9204/1‑93 (MQ=255)
tATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTa < 1:6213236/93‑1 (MQ=255)
aTCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTAt < 1:21929/93‑1 (MQ=255)
tCTGCATATGTCAGAACCATATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATc < 2:8461933/93‑1 (MQ=255)
cTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCg < 2:7779797/93‑1 (MQ=255)
atatGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGgcgc > 2:4929611/1‑93 (MQ=255)
atatGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGgcgc > 2:1793/1‑93 (MQ=255)
atatGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGgcgc > 2:1983710/1‑93 (MQ=255)
tatGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCa < 1:3100711/93‑1 (MQ=255)
tatGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCa > 1:4127371/1‑93 (MQ=255)
tatGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCa < 1:9818490/93‑1 (MQ=255)
tGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAgg < 2:6577030/93‑1 (MQ=255)
cAGAACCAGAGTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGc < 2:780259/93‑1 (MQ=255)
aGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCa < 2:6992734/93‑1 (MQ=255)
gAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCAt > 1:8923692/1‑93 (MQ=255)
aaCCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATa > 1:3009920/1‑93 (MQ=255)
aaCCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATa > 1:9342805/1‑93 (MQ=255)
aCCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATac < 2:829525/93‑1 (MQ=255)
aCCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGACTATCGGCGCAAGTGCATac > 2:8634867/1‑93 (MQ=255)
ccAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATaca > 2:5984421/1‑93 (MQ=255)
cAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATacac < 2:8507628/93‑1 (MQ=255)
cAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATacac < 1:5493483/93‑1 (MQ=255)
gATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAg > 2:1408124/1‑93 (MQ=255)
gATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAg < 1:3707143/93‑1 (MQ=255)
gATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAg < 1:6823027/93‑1 (MQ=255)
gATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAg > 2:9745596/1‑93 (MQ=255)
aTTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGt < 2:5922021/93‑1 (MQ=255)
ttGGGCGGGGGG‑GAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTa > 2:7653061/1‑93 (MQ=255)
|
GGCCCGAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCGGGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAGTACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAG > NC_000913/1725421‑1725601
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCGGGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAGCTGA > NC_000913/1725425‑1725611
|
CGAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCGGGGGG > SRR4302540.612138/1‑94 (MQ=60)
AATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGACCCAGATTGGGC‑GGGGGTGA > SRR4302540.8877927/1‑94 (MQ=60)
AATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGA > SRR4302540.2160472/1‑94 (MQ=60)
AATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGA < SRR4302540.1595282/94‑1 (MQ=60)
ATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAA < SRR4302540.2303126/94‑1 (MQ=60)
ATAAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAA < SRR4302540.638588/94‑1 (MQ=60)
GAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACC < SRR4302540.1832498/94‑1 (MQ=60)
GAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACC < SRR4302540.774970/94‑1 (MQ=60)
GAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACC < SRR4302540.7340070/94‑1 (MQ=60)
AAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCG < SRR4302540.9081739/94‑1 (MQ=60)
AGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGT > SRR4302540.7409845/1‑94 (MQ=60)
GAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTA > SRR4302540.5335111/1‑94 (MQ=60)
GAAGCCGATGCACTGCATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTA > SRR4302540.3641054/1‑94 (MQ=60)
AAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTAT < SRR4302540.1668678/94‑1 (MQ=60)
AAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTAT > SRR4302540.21618/1‑94 (MQ=60)
AGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATA > SRR4302540.9587249/1‑94 (MQ=60)
GCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATAC < SRR4302540.9016114/94‑1 (MQ=60)
ACCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATAC < SRR4302540.5811627/94‑1 (MQ=60)
CCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACT < SRR4302540.7672700/94‑1 (MQ=60)
CGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTG > SRR4302540.6072565/1‑94 (MQ=60)
CGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTG < SRR4302540.9321621/94‑1 (MQ=60)
ATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGAT < SRR4302540.8870457/94‑1 (MQ=60)
ATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGAT > SRR4302540.2594435/1‑94 (MQ=60)
ATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGAT < SRR4302540.9787831/94‑1 (MQ=60)
ATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGAT > SRR4302540.7564743/1‑94 (MQ=60)
TGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATG > SRR4302540.8128730/1‑94 (MQ=60)
CACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCG > SRR4302540.7309427/1‑94 (MQ=60)
CTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTT > SRR4302540.3274755/1‑94 (MQ=60)
CTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTT > SRR4302540.7952902/1‑94 (MQ=60)
TGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTC > SRR4302540.2874975/1‑94 (MQ=60)
TGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTC < SRR4302540.61240/94‑1 (MQ=60)
TATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCG > SRR4302540.1485696/1‑94 (MQ=60)
CTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGA > SRR4302540.1528123/1‑94 (MQ=60)
CTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGA > SRR4302540.9579968/1‑94 (MQ=60)
CTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGA > SRR4302540.4312289/1‑94 (MQ=60)
TGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAA > SRR4302540.8727516/1‑94 (MQ=60)
GATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAA < SRR4302540.9917589/94‑1 (MQ=60)
GATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAA < SRR4302540.9917588/94‑1 (MQ=60)
TTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAA > SRR4302540.6644354/1‑94 (MQ=60)
TGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG > SRR4302540.8142370/1‑94 (MQ=60)
TGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG < SRR4302540.6442279/94‑1 (MQ=60)
TGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG > SRR4302540.193566/1‑94 (MQ=60)
GAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑T < SRR4302540.1977879/94‑1 (MQ=60)
GAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑T < SRR4302540.899156/94‑1 (MQ=60)
AACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TA > SRR4302540.7908382/1‑94 (MQ=60)
AACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TA > SRR4302540.2076674/1‑94 (MQ=60)
AACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TA < SRR4302540.2324936/94‑1 (MQ=60)
ACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TAC < SRR4302540.717460/94‑1 (MQ=60)
ACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TAC < SRR4302540.6679258/94‑1 (MQ=60)
ACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TAC < SRR4302540.3013319/94‑1 (MQ=60)
CAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACG < SRR4302540.9006740/94‑1 (MQ=60)
AACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGC < SRR4302540.431609/94‑1 (MQ=60)
ACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCG < SRR4302540.1127442/94‑1 (MQ=60)
ACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑AACGCG > SRR4302540.8853023/1‑94 (MQ=60)
TGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCC > SRR4302540.4464762/1‑94 (MQ=60)
GTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGT > SRR4302540.813087/1‑94 (MQ=60)
GTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGT > SRR4302540.1693588/1‑94 (MQ=60)
TAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTT < SRR4302540.9483292/94‑1 (MQ=60)
AAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTT > SRR4302540.3531291/1‑94 (MQ=60)
AAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTT < SRR4302540.885226/94‑1 (MQ=60)
AACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTC > SRR4302540.6213808/1‑94 (MQ=60)
AACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTC > SRR4302540.6213809/1‑94 (MQ=60)
ACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCC > SRR4302540.407106/1‑94 (MQ=60)
GCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCAC < SRR4302540.8404141/94‑1 (MQ=60)
CGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGCATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACG > SRR4302540.570149/1‑94 (MQ=60)
GGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGG > SRR4302540.4534402/1‑94 (MQ=60)
GGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGG < SRR4302540.9264894/94‑1 (MQ=60)
CATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTC < SRR4302540.9149747/94‑1 (MQ=60)
CATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTC > SRR4302540.4830799/1‑94 (MQ=60)
CATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTC < SRR4302540.2933658/94‑1 (MQ=60)
CATTGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTC > SRR4302540.2940857/1‑94 (MQ=60)
CATGGCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTC < SRR4302540.2933657/94‑1 (MQ=60)
GCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGAT < SRR4302540.8436549/94‑1 (MQ=60)
GCTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGAT < SRR4302540.4937823/94‑1 (MQ=60)
CTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATT > SRR4302540.4956438/1‑94 (MQ=60)
CTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATT > SRR4302540.8613987/1‑94 (MQ=60)
CTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATT > SRR4302540.9302/1‑94 (MQ=60)
CTTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATT < SRR4302540.9507620/94‑1 (MQ=60)
TTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTA > SRR4302540.3427771/1‑94 (MQ=60)
TTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTA > SRR4302540.8086488/1‑94 (MQ=60)
TTATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGCGAACCGTATACTGATGCGTTCCGCGACAAAG‑TACCCGCCCGTTTCCCCGGTCTGATTA > SRR4302540.6093730/1‑94 (MQ=60)
TATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTAT < SRR4302540.6282368/94‑1 (MQ=60)
ATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATC < SRR4302540.2987786/94‑1 (MQ=60)
ATCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATC < SRR4302540.22173/94‑1 (MQ=60)
TCTGCATATGTCAGAGGCAGATTGGGC‑GGGGGTGACCCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCG < SRR4302540.734295/94‑1 (MQ=60)
TCTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCG < SRR4302540.2905428/94‑1 (MQ=60)
CTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGG < SRR4302540.8329053/94‑1 (MQ=60)
CTGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGG > SRR4302540.6891709/1‑94 (MQ=60)
TGCATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGC < SRR4302540.7649945/94‑1 (MQ=60)
CATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGC > SRR4302540.3090723/1‑94 (MQ=60)
ATATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCA > SRR4302540.4171967/1‑94 (MQ=60)
TATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAG < SRR4302540.9933370/94‑1 (MQ=60)
TATGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAG < SRR4302540.3134675/94‑1 (MQ=60)
TGTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGT < SRR4302540.9569977/94‑1 (MQ=60)
GTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTG > SRR4302540.7154102/1‑94 (MQ=60)
GTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTG > SRR4302540.2693362/1‑94 (MQ=60)
GTCAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTG > SRR4302540.7154103/1‑94 (MQ=60)
CAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCA < SRR4302540.6073230/94‑1 (MQ=60)
CAGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCA > SRR4302540.8964671/1‑94 (MQ=60)
AGAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCAT > SRR4302540.9027313/1‑94 (MQ=60)
GAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATA > SRR4302540.9454125/1‑94 (MQ=60)
GAACCAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATA > SRR4302540.3043035/1‑94 (MQ=60)
CAGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACA < SRR4302540.5553962/94‑1 (MQ=60)
AGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAG > SRR4302540.2180364/1‑94 (MQ=60)
AGATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAG < SRR4302540.1917579/94‑1 (MQ=60)
GATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGT < SRR4302540.6898559/94‑1 (MQ=60)
GATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGT < SRR4302540.3747602/94‑1 (MQ=60)
ATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTA < SRR4302540.7300606/94‑1 (MQ=60)
ATTGGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTA < SRR4302540.10029401/94‑1 (MQ=60)
gtggggcGGGGGTGAACCGTGTACGGTTGCGTCCTGCGAAAAAG‑TACGCGCCCGTTTCCGCGGT‑CGATTATCGGCGCAGGTGCATACACAGTAG < SRR4302540.7673689/87‑1 (MQ=58)
atgggGGGGGGTTAACCGTATTCTGATTGGTTCCGGGAAAAAGTTCCGCGCCCGTTCCCA‑GGGCCGATTATCGGCGCAGGTGCATACACAGTAG < SRR4302540.7673688/89‑1 (MQ=24)
GGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAA > SRR4302540.9438789/1‑94 (MQ=60)
GGGC‑GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAA < SRR4302540.1882431/94‑1 (MQ=60)
GCGCGGGGGG‑GAACCGTGTACTGATGCGTTCCGCGAAAAAG‑TACGCTCCGGTTGCCAGAGTCCGATTATCGGCGCAGGTGCATACACAGTAGAA < SRR4302540.2652340/94‑1 (MQ=60)
gcGGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAA < SRR4302540.6108834/92‑1 (MQ=60)
GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAG > SRR4302540.748359/1‑94 (MQ=60)
GGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAG > SRR4302540.1551893/1‑94 (MQ=60)
GGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAGC > SRR4302540.2910506/1‑94 (MQ=60)
GGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAGC > SRR4302540.7387160/1‑94 (MQ=60)
GGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAGCTG < SRR4302540.3766874/94‑1 (MQ=60)
GTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCTTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAGCTGA > SRR4302540.423398/1‑94 (MQ=60)
GTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAGCTGA > SRR4302540.238117/1‑94 (MQ=60)
|
CGAATGAAGAAGCCGATGCACTGTATCTGATTGAACAACTGGGTAAACGCGGCATTGCTTATCTGCATATGTCAGAACCAGATTGGGCGGGGGGTGAACCGTATACTGATGCGTTCCGCGAAAAAG‑TACGCGCCCGTTTCCACGGTCCGATTATCGGCGCAGGTGCATACACAGTAGAAAAAGCTGA > NC_000913/1725425‑1725611
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
