Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,745,095 (A)5→6 intergenic (+66/‑60) b1667 → / → b1668 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,745,0901.A99.5% 759.8 / ‑3.9 200intergenic (+61/‑65)b1667/b1668hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/1);  new base A (86/113);  total (86/114)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01

Only 100 of 211 total aligned reads displayed.

TTAGTCAAATCAATCAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCT‑AAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGG  >  NC_000913/1744998‑1745177
                                                                                             |                                                                                       
ttAGTCAAATCAATCAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCt                                                                                          >  1:4812596/1‑93 (MQ=255)
 tAGTCAAATCAATCAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCT‑a                                                                                        >  2:3874107/1‑93 (MQ=255)
  aGTCAAATCAATCAGGCAAAACTCGCCTGACAGGATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCT‑aa                                                                                       >  1:6143972/1‑93 (MQ=255)
  aGTCAAATCAATCAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCT‑aa                                                                                       <  1:6676/93‑1 (MQ=255)
   gTCAAATCAATCAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCT‑aaa                                                                                      >  1:702200/1‑93 (MQ=255)
   gTCAAATCAATCAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTATTCATCCCTGTCTGAAATTTCTCAAATTCT‑aaa                                                                                      <  2:4677482/93‑1 (MQ=255)
         tcaatcaGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCT‑aaaaaatct                                                                                <  2:3563250/93‑5 (MQ=255)
           aatcaGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCa                                                                               >  1:3939070/1‑93 (MQ=255)
            atcaGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCaa                                                                              <  2:2970701/93‑1 (MQ=255)
             tcaGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAAc                                                                             >  1:4452754/1‑93 (MQ=255)
              caGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAAcc                                                                            <  2:2811819/93‑1 (MQ=255)
               aGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCa                                                                           <  2:5862619/93‑1 (MQ=255)
               aGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCa                                                                           >  1:686632/1‑93 (MQ=255)
                 gCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCaaa                                                                         <  1:1414347/93‑1 (MQ=255)
                 gCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCaaa                                                                         <  1:5408284/93‑1 (MQ=255)
                  cAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAAc                                                                        <  1:4491396/93‑1 (MQ=255)
                    aaaCTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACtt                                                                      >  1:4138420/1‑93 (MQ=255)
                    aaaCTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACtt                                                                      <  1:1878937/93‑1 (MQ=255)
                    aaaCTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACtt                                                                      >  1:1726923/1‑93 (MQ=255)
                    aaaCTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACtt                                                                      >  1:5179586/1‑93 (MQ=255)
                     aaCTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTa                                                                     >  1:3270196/1‑93 (MQ=255)
                       cTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATc                                                                   <  1:3475142/93‑1 (MQ=255)
                       cTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATc                                                                   <  2:3418134/93‑1 (MQ=255)
                        tCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCt                                                                  <  1:2526931/93‑1 (MQ=255)
                        tCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCt                                                                  <  1:226431/93‑1 (MQ=255)
                        tCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCt                                                                  <  2:6127699/93‑1 (MQ=255)
                             tGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATaa                                                             <  1:3159375/93‑1 (MQ=255)
                              gACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAac                                                            <  2:3939210/93‑1 (MQ=255)
                              gACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAac                                                            <  2:5953396/93‑1 (MQ=255)
                              gACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAac                                                            >  2:2630014/1‑93 (MQ=255)
                               aCAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAaca                                                           <  2:4044975/93‑1 (MQ=255)
                                  gAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTa                                                        >  2:104687/1‑93 (MQ=255)
                                  gAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTa                                                        >  2:2375806/1‑93 (MQ=255)
                                   aaTTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTaa                                                       <  2:4895490/93‑1 (MQ=255)
                                    aTTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTaaa                                                      <  1:59951/93‑1 (MQ=255)
                                     tttAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAAt                                                     <  2:859971/93‑1 (MQ=255)
                                      ttAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACGCTAAAtt                                                    <  2:4562860/93‑1 (MQ=255)
                                      ttAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAAtt                                                    >  1:152393/1‑93 (MQ=255)
                                       tAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTc                                                   >  1:2784278/1‑93 (MQ=255)
                                       tAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTc                                                   <  1:1103727/93‑1 (MQ=255)
                                           cAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGaaa                                               <  1:3928199/93‑1 (MQ=255)
                                             aGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGa                                             <  1:1798967/93‑1 (MQ=255)
                                              gggCGGTTAGCGCCCTTTTCATCGCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGaa                                            <  1:4173800/93‑1 (MQ=255)
                                              gggCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGaa                                            <  2:3043544/93‑1 (MQ=255)
                                              gggCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGaa                                            <  2:5883658/93‑1 (MQ=255)
                                               ggCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAAt                                           >  1:932986/1‑93 (MQ=255)
                                               ggCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAAt                                           <  1:5830693/93‑1 (MQ=255)
                                               ggCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAAt                                           <  2:6036443/93‑1 (MQ=255)
                                               ggCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAAt                                           >  1:5358197/1‑93 (MQ=255)
                                                 cGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTACATTCGAAAGAATGc                                         >  2:1963238/1‑93 (MQ=255)
                                                  ggTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCg                                        <  2:1295226/93‑1 (MQ=255)
                                                  ggTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCg                                        >  1:1265585/1‑93 (MQ=255)
                                                    ttAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTa                                      >  2:5028367/1‑93 (MQ=255)
                                                    ttAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTa                                      <  1:2205208/93‑1 (MQ=255)
                                                     tAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTAc                                     <  2:2400472/93‑1 (MQ=255)
                                                      aGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACa                                    <  1:4397466/93‑1 (MQ=255)
                                                      aGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACa                                    <  1:5846411/93‑1 (MQ=255)
                                                      aGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACa                                    <  2:5267330/93‑1 (MQ=255)
                                                       gcgcCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAg                                   <  1:834305/93‑1 (MQ=255)
                                                       gcgcCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAg                                   <  2:1758329/93‑1 (MQ=255)
                                                       gcgcCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAg                                   <  2:244568/93‑1 (MQ=255)
                                                         gcCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAgga                                 >  1:4570325/1‑92 (MQ=255)
                                                         gcCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGgt                                 <  2:4853474/93‑1 (MQ=255)
                                                         gcCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGgt                                 >  2:4281121/1‑93 (MQ=255)
                                                           ccTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGgtaa                               <  1:3109632/93‑1 (MQ=255)
                                                           ccTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGgtaa                               <  2:2220161/93‑1 (MQ=255)
                                                            cTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGgtaag                              >  1:6214453/1‑93 (MQ=255)
                                                            cTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGgtaag                              >  1:4338390/1‑93 (MQ=255)
                                                            cTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGgtaag                              >  1:5297111/1‑93 (MQ=255)
                                                            cTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGgtaag                              <  2:4475821/93‑1 (MQ=255)
                                                             ttttCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGgtaagt                             >  2:1849836/1‑93 (MQ=255)
                                                             ttttCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGgtaagt                             >  2:5778901/1‑93 (MQ=255)
                                                             ttttCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGgtaagt                             >  1:4623908/1‑93 (MQ=255)
                                                               ttCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGgtaagtaa                           <  2:3297372/93‑1 (MQ=255)
                                                                tCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAAc                          >  2:5338679/1‑93 (MQ=255)
                                                                 cATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACa                         >  2:3644767/1‑93 (MQ=255)
                                                                   tCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAAt                       <  2:497367/93‑1 (MQ=255)
                                                                    cccTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATg                      >  1:1142116/1‑93 (MQ=255)
                                                                     ccTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGa                     >  1:5632272/1‑93 (MQ=255)
                                                                      cTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGaa                    <  2:4711745/93‑1 (MQ=255)
                                                                      cTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGaa                    <  2:78490/93‑1 (MQ=255)
                                                                      cTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGaa                    <  2:5417567/93‑1 (MQ=255)
                                                                       tGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGaaa                   >  1:4641914/1‑93 (MQ=255)
                                                                          cTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGaaaaaa                >  1:4048719/1‑93 (MQ=255)
                                                                           tGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGaaaaaaa               <  1:3802703/93‑1 (MQ=255)
                                                                            gAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAAt              >  1:2067219/1‑93 (MQ=255)
                                                                              aaTTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTg            >  1:2352535/1‑93 (MQ=255)
                                                                               aTTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGc           <  1:3308355/93‑1 (MQ=255)
                                                                                tttCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCt          >  2:4346726/1‑93 (MQ=255)
                                                                                tttCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCt          >  2:3145872/1‑93 (MQ=255)
                                                                                tttCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCt          >  2:5551322/1‑93 (MQ=255)
                                                                                  tctcAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTAt        <  1:4947810/93‑1 (MQ=255)
                                                                                  tctcAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTAt        >  1:3690960/1‑93 (MQ=255)
                                                                                   ctcAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTAtt       <  2:4814223/93‑1 (MQ=255)
                                                                                   ctcAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTAtt       <  2:2430689/93‑1 (MQ=255)
                                                                                   ctcAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTAtt       >  1:4097742/1‑93 (MQ=255)
                                                                                    tcAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATtg      >  2:3446123/1‑93 (MQ=255)
                                                                                      aaaTTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATtgtg    >  2:4413210/1‑93 (MQ=255)
                                                                                        aTTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTggg  <  1:3787776/93‑1 (MQ=255)
                                                                                        aTTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTggg  <  1:1007085/93‑1 (MQ=255)
                                                                                             |                                                                                       
TTAGTCAAATCAATCAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCT‑AAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGG  >  NC_000913/1744998‑1745177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AATCAATCAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCT‑AAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTA  >  NC_000913/1745005‑1745188
                                                                                           |                                                                                             
AATCAATCAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCT‑AAAAAatc                                                                                            <  SRR4302533.3314636/94‑4 (MQ=60)
AATCAATCAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCT‑AAAAAatc                                                                                            <  SRR4302533.1868122/94‑4 (MQ=60)
  TCAATCAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTC                                                                                           <  SRR4302533.2926523/94‑1 (MQ=60)
   CAATCAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCA                                                                                          >  SRR4302533.3963111/1‑94 (MQ=60)
     ATCAGGCAAACCTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAAC                                                                                        <  SRR4302533.3792382/94‑1 (MQ=60)
     ATCAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAAC                                                                                        >  SRR4302533.4479676/1‑94 (MQ=60)
       CAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCA                                                                                      <  SRR4302533.2722939/94‑1 (MQ=60)
       CAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCA                                                                                      >  SRR4302533.688907/1‑94 (MQ=60)
       CAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCA                                                                                      >  SRR4302533.690692/1‑94 (MQ=60)
          GCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAAC                                                                                   <  SRR4302533.1422902/94‑1 (MQ=60)
          GCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAAC                                                                                   <  SRR4302533.5440789/94‑1 (MQ=60)
           CAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACT                                                                                  <  SRR4302533.4518597/94‑1 (MQ=60)
            AAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTT                                                                                 >  SRR4302533.4163525/1‑94 (MQ=60)
            AAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTT                                                                                 >  SRR4302533.5210865/1‑94 (MQ=60)
            AAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTT                                                                                 >  SRR4302533.1737405/1‑94 (MQ=60)
             AAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTA                                                                                <  SRR4302533.1890388/94‑1 (MQ=60)
             AAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTA                                                                                >  SRR4302533.3290374/1‑94 (MQ=60)
             AAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTA                                                                                >  SRR4302533.3218909/1‑94 (MQ=60)
              AACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTAT                                                                               <  SRR4302533.2315707/94‑1 (MQ=60)
              AACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTAT                                                                               <  SRR4302533.931915/94‑1 (MQ=60)
                CTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCT                                                                             <  SRR4302533.3496585/94‑1 (MQ=60)
                 TCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTG                                                                            <  SRR4302533.4189616/94‑1 (MQ=60)
                 TCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTG                                                                            <  SRR4302533.2542488/94‑1 (MQ=60)
                 TCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTG                                                                            <  SRR4302533.227842/94‑1 (MQ=60)
                    CCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATA                                                                         >  SRR4302533.1796249/1‑94 (MQ=60)
                    CCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATA                                                                         >  SRR4302533.1465037/1‑94 (MQ=60)
                      TGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAAC                                                                       >  SRR4302533.2121745/1‑94 (MQ=60)
                      TGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAAC                                                                       <  SRR4302533.3178819/94‑1 (MQ=60)
                      TGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAAC                                                                       <  SRR4302533.3951838/94‑1 (MQ=60)
                       GACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGACTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACA                                                                      >  SRR4302533.4470171/1‑94 (MQ=60)
                            AATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAA                                                                 <  SRR4302533.6226426/94‑1 (MQ=60)
                             ATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAAT                                                                <  SRR4302533.60342/94‑1 (MQ=60)
                              TTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATT                                                               <  SRR4302533.4115911/94‑1 (MQ=60)
                              TTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATT                                                               >  SRR4302533.153366/1‑94 (MQ=60)
                               TTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTC                                                              >  SRR4302533.2801385/1‑94 (MQ=60)
                               TTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTC                                                              <  SRR4302533.4653146/94‑1 (MQ=60)
                               TTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTC                                                              <  SRR4302533.4576719/94‑1 (MQ=60)
                                TAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCG                                                             <  SRR4302533.1110261/94‑1 (MQ=60)
                                  ATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAA                                                           <  SRR4302533.5867994/94‑1 (MQ=60)
                                    CAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAG                                                         <  SRR4302533.3952182/94‑1 (MQ=60)
                                      AGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAA                                                       <  SRR4302533.4493367/94‑1 (MQ=60)
                                      AGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAA                                                       <  SRR4302533.1809913/94‑1 (MQ=60)
                                       GGGCGGTTAGCGCCCTTTTCATCGCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAAT                                                      <  SRR4302533.4199094/94‑1 (MQ=60)
                                       GGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAAT                                                      >  SRR4302533.5390361/1‑94 (MQ=60)
                                       GGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAAT                                                      >  SRR4302533.938463/1‑94 (MQ=60)
                                       GGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAAT                                                      <  SRR4302533.3633124/94‑1 (MQ=60)
                                        GGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATG                                                     <  SRR4302533.5865928/94‑1 (MQ=60)
                                          CGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCG                                                   <  SRR4302533.3350913/94‑1 (MQ=60)
                                          CGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCG                                                   <  SRR4302533.6017029/94‑1 (MQ=60)
                                          CGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCG                                                   >  SRR4302533.1654468/1‑94 (MQ=60)
                                          CGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCG                                                   >  SRR4302533.1273157/1‑94 (MQ=60)
                                          CGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCG                                                   >  SRR4302533.4170442/1‑94 (MQ=60)
                                             TTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTAC                                                <  SRR4302533.2218806/94‑1 (MQ=60)
                                             TTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTATAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTAC                                                <  SRR4302533.3960617/94‑1 (MQ=60)
                                              TAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACA                                               <  SRR4302533.4067410/94‑1 (MQ=60)
                                               AGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAG                                              <  SRR4302533.4424015/94‑1 (MQ=60)
                                               AGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAG                                              <  SRR4302533.4412949/94‑1 (MQ=60)
                                               AGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAG                                              <  SRR4302533.5881756/94‑1 (MQ=60)
                                                GCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGG                                             <  SRR4302533.839193/94‑1 (MQ=60)
                                                 CGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGA                                            >  SRR4302533.4598023/1‑94 (MQ=60)
                                                  GCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTA                                           >  SRR4302533.5395490/1‑94 (MQ=60)
                                                   CCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAA                                          <  SRR4302533.1062825/94‑1 (MQ=60)
                                                    CCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAG                                         >  SRR4302533.5328836/1‑94 (MQ=60)
                                                    CCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAG                                         >  SRR4302533.6251718/1‑94 (MQ=60)
                                                    CCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAG                                         >  SRR4302533.4364538/1‑94 (MQ=60)
                                                    CCTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAG                                         <  SRR4302533.3128745/94‑1 (MQ=60)
                                                     CTTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGT                                        >  SRR4302533.4651935/1‑94 (MQ=60)
                                                      TTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTA                                       <  SRR4302533.4155430/94‑1 (MQ=60)
                                                      TTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTA                                       <  SRR4302533.1362189/94‑1 (MQ=60)
                                                      TTTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTA                                       >  SRR4302533.1953779/1‑94 (MQ=60)
                                                       TTTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAA                                      <  SRR4302533.2257035/94‑1 (MQ=60)
                                                        TTCATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAAC                                     >  SRR4302533.5367367/1‑94 (MQ=60)
                                                          CATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAA                                   >  SRR4302533.630918/1‑94 (MQ=60)
                                                           ATCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAAT                                  <  SRR4302533.4244952/94‑1 (MQ=60)
                                                            TCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATG                                 >  SRR4302533.1148924/1‑94 (MQ=60)
                                                            TCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATG                                 <  SRR4302533.5774990/94‑1 (MQ=60)
                                                            TCCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATG                                 <  SRR4302533.4609842/94‑1 (MQ=60)
                                                             CCCTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGA                                >  SRR4302533.5666330/1‑94 (MQ=60)
                                                               CTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAA                              >  SRR4302533.4670038/1‑94 (MQ=60)
                                                               CTGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAA                              >  SRR4302533.1143474/1‑94 (MQ=60)
                                                                TGTCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAA                             >  SRR4302533.334644/1‑94 (MQ=60)
                                                                  TCTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAA                           >  SRR4302533.4073376/1‑94 (MQ=60)
                                                                   CTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAA                          >  SRR4302533.3825702/1‑94 (MQ=60)
                                                                   CTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAA                          >  SRR4302533.4763531/1‑94 (MQ=60)
                                                                   CTGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAA                          >  SRR4302533.4893196/1‑94 (MQ=60)
                                                                    TGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAAT                         >  SRR4302533.2079955/1‑94 (MQ=60)
                                                                    TGAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAAT                         <  SRR4302533.3825972/94‑1 (MQ=60)
                                                                     GAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATT                        <  SRR4302533.2499819/94‑1 (MQ=60)
                                                                     GAAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGGAAGTAACAATGAAAAAAATT                        <  SRR4302533.950545/94‑1 (MQ=60)
                                                                      AAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTG                       >  SRR4302533.2367087/1‑94 (MQ=60)
                                                                      AAATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTG                       <  SRR4302533.612001/94‑1 (MQ=60)
                                                                       AATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGC                      >  SRR4302533.789664/1‑94 (MQ=60)
                                                                        ATTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCT                     <  SRR4302533.3328781/94‑1 (MQ=60)
                                                                         TTTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTA                    >  SRR4302533.5527657/1‑94 (MQ=60)
                                                                          TTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTAT                   >  SRR4302533.3713638/1‑94 (MQ=60)
                                                                          TTCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTAT                   <  SRR4302533.3145871/94‑1 (MQ=60)
                                                                           TCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATT                  >  SRR4302533.4122685/1‑94 (MQ=60)
                                                                           TCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATT                  <  SRR4302533.4977768/94‑1 (MQ=60)
                                                                           TCTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATT                  <  SRR4302533.523172/94‑1 (MQ=60)
                                                                            CTCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTG                 <  SRR4302533.6180744/94‑1 (MQ=60)
                                                                             TCAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGT                <  SRR4302533.1157904/94‑1 (MQ=60)
                                                                              CAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTG               <  SRR4302533.4956992/94‑1 (MQ=60)
                                                                              CAAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTG               <  SRR4302533.2114922/94‑1 (MQ=60)
                                                                               AAATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGG              <  SRR4302533.699207/94‑1 (MQ=60)
                                                                                AATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGG             <  SRR4302533.515861/94‑1 (MQ=60)
                                                                                 ATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGT            >  SRR4302533.5641644/1‑94 (MQ=60)
                                                                                 ATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGT            <  SRR4302533.3810972/94‑1 (MQ=60)
                                                                                 ATTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGT            <  SRR4302533.1012977/94‑1 (MQ=60)
                                                                                  TTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTG           >  SRR4302533.1516608/1‑94 (MQ=60)
                                                                                  TTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTG           <  SRR4302533.3153201/94‑1 (MQ=60)
                                                                                  TTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTG           >  SRR4302533.667614/1‑94 (MQ=60)
                                                                                  TTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTG           <  SRR4302533.4618038/94‑1 (MQ=60)
                                                                                  TTCTAAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTG           >  SRR4302533.3741859/1‑94 (MQ=60)
                                                                                     taAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCG        <  SRR4302533.2432955/92‑1 (MQ=60)
                                                                                     taAAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCG        >  SRR4302533.5152780/3‑94 (MQ=60)
                                                                                       AAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGG      >  SRR4302533.3311403/1‑94 (MQ=60)
                                                                                          AATCTCACCCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCT   <  SRR4302533.1226648/94‑1 (MQ=60)
                                                                                          AATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCT   <  SRR4302533.4306857/94‑1 (MQ=60)
                                                                                           ATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTA  <  SRR4302533.3666276/94‑1 (MQ=60)
                                                                                           ATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTA  <  SRR4302533.3666277/94‑1 (MQ=60)
                                                                                           ATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTA  >  SRR4302533.2257649/1‑94 (MQ=60)
                                                                                           |                                                                                             
AATCAATCAGGCAAAACTCGCCTGACAGAATTTAATCAAGGGCGGTTAGCGCCCTTTTCATCCCTGTCTGAAATTTCTCAAATTCT‑AAAAATCTCAACCAAACTTATCTGATAACACTAAATTCGAAAGAATGCGTACAGGTAAGTAACAATGAAAAAAATTGCTATTGTGGGTGCCGGGCCTA  >  NC_000913/1745005‑1745188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑