Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,749,776 T→C A693A (GCA→GCG)  b1673 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,749,7760TC100.0% 679.9 / NA 209A693A (GCA→GCG) b1673hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (113/96);  total (113/96)

Only 100 of 221 total aligned reads displayed.

CGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCTGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTT  >  NC_000913/1749686‑1749865
                                                                                          |                                                                                         
 gCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTgccgcc                                                                                        <  2:2370703/93‑1 (MQ=255)
 gCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTgccgcc                                                                                        >  2:1732060/1‑93 (MQ=255)
 gCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTgccgcc                                                                                        >  1:4601963/1‑93 (MQ=255)
  ccTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCGTCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCa                                                                                       <  1:4438967/93‑1 (MQ=255)
  ccTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCa                                                                                       <  1:4260693/93‑1 (MQ=255)
    tCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGa                                                                                     >  2:6025927/1‑93 (MQ=255)
    tCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGa                                                                                     <  2:2170955/93‑1 (MQ=255)
    tCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGa                                                                                     >  2:1003819/1‑93 (MQ=255)
     cGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGAt                                                                                    <  2:1982457/93‑1 (MQ=255)
      gTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATc                                                                                   <  2:4613261/93‑1 (MQ=255)
      gTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATc                                                                                   >  2:313444/1‑93 (MQ=255)
       tCAACTTCGCTGACTTTCGTTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATcg                                                                                  >  2:6148755/1‑93 (MQ=255)
       tCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATcg                                                                                  >  2:3319749/1‑93 (MQ=255)
       tCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATcg                                                                                  >  2:3878740/1‑93 (MQ=255)
        cAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATcgg                                                                                 >  1:3564399/1‑93 (MQ=255)
         aaCTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATcggc                                                                                <  2:1640704/93‑1 (MQ=255)
         aaCTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATcggc                                                                                >  2:2922501/1‑93 (MQ=255)
          aCTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATcggcg                                                                               >  1:6238244/1‑93 (MQ=255)
          aCTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATcggcg                                                                               <  1:3773821/93‑1 (MQ=255)
          aCTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATcggcg                                                                               >  2:5694085/1‑93 (MQ=255)
          aCTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCGTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATcggcg                                                                               >  1:4087993/1‑93 (MQ=255)
           cTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATcggcgg                                                                              >  1:5812197/1‑93 (MQ=255)
              cGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCaa                                                                           <  2:6297489/93‑1 (MQ=255)
                cTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAata                                                                         >  2:5237480/1‑93 (MQ=255)
                cTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAata                                                                         >  2:120282/1‑93 (MQ=255)
                cTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAata                                                                         <  1:2227573/93‑1 (MQ=255)
                cTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAata                                                                         <  1:4030175/93‑1 (MQ=255)
                 tGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAatat                                                                        >  2:5178913/1‑93 (MQ=255)
                 tGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAatat                                                                        >  2:2653580/1‑93 (MQ=255)
                 tGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAatat                                                                        <  1:1169460/93‑1 (MQ=255)
                  gACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATc                                                                       >  2:1256655/1‑93 (MQ=255)
                   aCTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCt                                                                      <  2:3565894/93‑1 (MQ=255)
                   aCTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCt                                                                      <  1:3881061/93‑1 (MQ=255)
                      ttCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTcc                                                                   <  1:5640212/93‑1 (MQ=255)
                      ttCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTcc                                                                   <  2:6267/93‑1 (MQ=255)
                       tCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCa                                                                  <  1:1014310/93‑1 (MQ=255)
                        cGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAg                                                                 <  1:5446237/93‑1 (MQ=255)
                            aaCGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGcccc                                                             <  1:859887/93‑1 (MQ=255)
                               ggCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGa                                                          <  1:5883690/93‑1 (MQ=255)
                               ggCAAGTCATCCTGATGGTTCATCTGACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGa                                                          <  2:3663693/93‑1 (MQ=255)
                                gCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGAc                                                         <  2:5427649/93‑1 (MQ=255)
                                gCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGAc                                                         >  1:732160/1‑93 (MQ=255)
                                   aTTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCt                                                      >  1:2375948/1‑93 (MQ=255)
                                    ttCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTg                                                     >  1:1961143/1‑93 (MQ=255)
                                    ttCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTg                                                     >  2:2544061/1‑93 (MQ=255)
                                     tCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGc                                                    <  1:320625/93‑1 (MQ=255)
                                     tCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCACCCCCCGACGCTGc                                                    >  1:4219766/1‑93 (MQ=255)
                                        tCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAt                                                 >  2:1036297/1‑93 (MQ=255)
                                        tCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAt                                                 >  1:4715768/1‑93 (MQ=255)
                                        tCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAt                                                 <  1:2090/93‑1 (MQ=255)
                                        tCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAt                                                 >  1:1804696/1‑93 (MQ=255)
                                          cTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGt                                               >  2:5398085/1‑93 (MQ=255)
                                          cTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGt                                               <  2:2293206/93‑1 (MQ=255)
                                           tGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGtt                                              >  2:4917516/1‑93 (MQ=255)
                                            gATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCCATATCTTCCAGCCCCAGACGCTGCAATGctt                                             >  1:1218457/1‑93 (MQ=255)
                                            gATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGttt                                             <  1:1153367/93‑1 (MQ=255)
                                            gATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGttt                                             <  1:1090704/93‑1 (MQ=255)
                                            gATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGttt                                             <  1:1437880/93‑1 (MQ=255)
                                             aTGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCCGACGCTGCAATGTTTc                                            >  1:1329102/1‑93 (MQ=255)
                                              tGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTcg                                           >  2:3687320/1‑93 (MQ=255)
                                               ggTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTcgc                                          <  2:4103248/93‑1 (MQ=255)
                                               ggTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTcgc                                          <  1:1896142/93‑1 (MQ=255)
                                               ggTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTcgc                                          <  2:696141/93‑1 (MQ=255)
                                                 ttCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCgg                                        >  2:4428053/1‑93 (MQ=255)
                                                  tCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCggg                                       <  1:1752846/93‑1 (MQ=255)
                                                     tCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTg                                    >  1:2588404/1‑93 (MQ=255)
                                                      cTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGGTgg                                   >  2:4930887/1‑93 (MQ=255)
                                                        tACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTgggc                                 >  1:5418762/1‑91 (MQ=255)
                                                        tACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGAc                                 <  1:2868715/93‑1 (MQ=255)
                                                           ccATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAc                              >  1:5975991/1‑93 (MQ=255)
                                                            cATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCCGATCGGCGGCAATATCTTCAAGCCCCCGACCCTTCAATGTTTCGCGGGTTGGAGAAcc                             >  1:5148001/1‑93 (MQ=255)
                                                             aTTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCa                            >  1:5000906/1‑93 (MQ=255)
                                                             aTTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCa                            >  2:3847889/1‑93 (MQ=255)
                                                              ttCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAccca                           >  2:508410/1‑91 (MQ=255)
                                                              ttCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCaa                           <  1:3444796/93‑1 (MQ=255)
                                                               tCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAg                          >  1:3141689/1‑93 (MQ=255)
                                                               tCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGAAGCTGCAATGTTTCGCGGGTTGGACAACCAAg                          >  1:2458040/1‑93 (MQ=255)
                                                                 cTTACGCAGTCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCt                        <  2:3010969/93‑1 (MQ=255)
                                                                 cTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCt                        >  1:5253153/1‑93 (MQ=255)
                                                                  ttACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCtg                       >  1:1039023/1‑93 (MQ=255)
                                                                  ttACGCAGGCAGTAGATTGTGTGACGCCAGATCGGTGGCAATATCTTCCAGCCACAGACGCTGCAATGTTTCGCGGGTTCGACAACCCAGCtg                       >  1:1695813/1‑93 (MQ=255)
                                                                   tACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCtgt                      >  2:1294673/1‑93 (MQ=255)
                                                                      gcaggcagTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTggg                   <  2:2746932/93‑1 (MQ=255)
                                                                      gcaggcagTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTggg                   <  2:1070517/93‑1 (MQ=255)
                                                                       caggcagTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGt                  >  1:2341479/1‑93 (MQ=255)
                                                                        aggcagTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTAGCGGGTTGGACAACCAAGCTGTGGGTc                 >  2:5558566/1‑93 (MQ=255)
                                                                          gcagTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCCGGTTGGACAACCAAGCTGTGGGTccc               >  1:907597/1‑93 (MQ=255)
                                                                           cagTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCa              <  2:574042/93‑1 (MQ=255)
                                                                           cagTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCa              >  2:4157211/1‑93 (MQ=255)
                                                                              tAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGcc           <  2:2345385/93‑1 (MQ=255)
                                                                                gATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCa         >  2:5521163/1‑93 (MQ=255)
                                                                                gATTGTGTGCCGCCAGATCGGCGGAAATATCTTCCAGCCCCAGAAGCTGCAATGTTTCGGGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCa         >  2:5924040/1‑93 (MQ=255)
                                                                                 aTTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCAt        <  1:186236/93‑1 (MQ=255)
                                                                                  ttGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCAtt       <  1:6080386/93‑1 (MQ=255)
                                                                                  ttGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCAtt       >  2:5629008/1‑93 (MQ=255)
                                                                                  ttGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGGTGGACAACCAAGCTGTGGGTCCCAGCCCAtt       >  1:4776363/1‑93 (MQ=255)
                                                                                  ttGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGGTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCAtt       >  1:3741579/1‑93 (MQ=255)
                                                                                       tgccgcCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCttt  <  2:1576083/93‑1 (MQ=255)
                                                                                       tgccgcCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCttt  <  1:5152148/93‑1 (MQ=255)
                                                                                       tgccgcCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCttt  <  2:5884305/93‑1 (MQ=255)
                                                                                          |                                                                                         
CGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCTGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTT  >  NC_000913/1749686‑1749865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCTGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTTGTAG  >  NC_000913/1749686‑1749869
                                                                                          |                                                                                             
CGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCC                                                                                            <  SRR4302533.137860/94‑1 (MQ=60)
CGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCC                                                                                            >  SRR4302533.4629845/1‑94 (MQ=60)
 GCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCA                                                                                           <  SRR4302533.3673099/94‑1 (MQ=60)
  CCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCGTCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAG                                                                                          <  SRR4302533.4465798/94‑1 (MQ=60)
  CCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAG                                                                                          <  SRR4302533.4153812/94‑1 (MQ=60)
  CCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAG                                                                                          >  SRR4302533.2073545/1‑94 (MQ=60)
  CCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAG                                                                                          <  SRR4302533.4286365/94‑1 (MQ=60)
  CCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAG                                                                                          >  SRR4302533.742384/1‑94 (MQ=60)
   CTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGA                                                                                         >  SRR4302533.1760808/1‑94 (MQ=60)
     CGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATC                                                                                       <  SRR4302533.1222958/94‑1 (MQ=60)
      GTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCG                                                                                      <  SRR4302533.1028799/94‑1 (MQ=60)
      GTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCG                                                                                      >  SRR4302533.1769487/1‑94 (MQ=60)
      GTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCG                                                                                      <  SRR4302533.4265063/94‑1 (MQ=60)
       TCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGG                                                                                     >  SRR4302533.3586367/1‑94 (MQ=60)
         AACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCG                                                                                   >  SRR4302533.6275597/1‑94 (MQ=60)
         AACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCGTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCG                                                                                   >  SRR4302533.4112880/1‑94 (MQ=60)
          ACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGG                                                                                  >  SRR4302533.5847300/1‑94 (MQ=60)
          ACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGG                                                                                  <  SRR4302533.3796954/94‑1 (MQ=60)
              CGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAAT                                                                              <  SRR4302533.230227/94‑1 (MQ=60)
               GCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATA                                                                             >  SRR4302533.2411948/1‑94 (MQ=60)
                CTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATAT                                                                            <  SRR4302533.4054704/94‑1 (MQ=60)
                CTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATAT                                                                            >  SRR4302533.3244889/1‑94 (MQ=60)
                CTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATAT                                                                            <  SRR4302533.2241322/94‑1 (MQ=60)
                 TGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATC                                                                           <  SRR4302533.1176479/94‑1 (MQ=60)
                  GACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCT                                                                          >  SRR4302533.1121994/1‑94 (MQ=60)
                   ACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTT                                                                         <  SRR4302533.3904743/94‑1 (MQ=60)
                    CTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTC                                                                        >  SRR4302533.5272177/1‑94 (MQ=60)
                     TTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCC                                                                       >  SRR4302533.927137/1‑94 (MQ=60)
                     TTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCC                                                                       <  SRR4302533.5498683/94‑1 (MQ=60)
                      TTCGCTAACGTCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCA                                                                      <  SRR4302533.407246/94‑1 (MQ=60)
                      TTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCA                                                                      <  SRR4302533.2718820/94‑1 (MQ=60)
                      TTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCA                                                                      <  SRR4302533.5748482/94‑1 (MQ=60)
                      TTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCA                                                                      <  SRR4302533.5674304/94‑1 (MQ=60)
                       TCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAG                                                                     <  SRR4302533.1020251/94‑1 (MQ=60)
                       TCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAG                                                                     <  SRR4302533.1683621/94‑1 (MQ=60)
                        CGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGC                                                                    <  SRR4302533.5479046/94‑1 (MQ=60)
                          CTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCC                                                                  <  SRR4302533.1216638/94‑1 (MQ=60)
                          CTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCC                                                                  <  SRR4302533.2568073/94‑1 (MQ=60)
                           TAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCC                                                                 >  SRR4302533.1810218/1‑94 (MQ=60)
                            AACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCA                                                                <  SRR4302533.864925/94‑1 (MQ=60)
                              CGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGA                                                              <  SRR4302533.3538079/94‑1 (MQ=60)
                              CGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGA                                                              <  SRR4302533.64357/94‑1 (MQ=60)
                               GGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGAC                                                             <  SRR4302533.5919248/94‑1 (MQ=60)
                               GGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGAC                                                             <  SRR4302533.2944938/94‑1 (MQ=60)
                               GGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGAC                                                             >  SRR4302533.736468/1‑94 (MQ=60)
                                  AATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCT                                                          >  SRR4302533.2390648/1‑94 (MQ=60)
                                  AATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCT                                                          <  SRR4302533.6049779/94‑1 (MQ=60)
                                   ATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATGTCTTCCACCCCCAGACGCTG                                                         >  SRR4302533.6301051/1‑94 (MQ=60)
                                   ATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGTCGCTG                                                         >  SRR4302533.3904018/1‑94 (MQ=60)
                                   ATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTG                                                         >  SRR4302533.1973116/1‑94 (MQ=60)
                                   ATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTG                                                         >  SRR4302533.3571449/1‑94 (MQ=60)
                                    TTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCACCCCCCGACGCTGC                                                        >  SRR4302533.4245283/1‑94 (MQ=60)
                                     TCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCA                                                       <  SRR4302533.1935684/94‑1 (MQ=60)
                                     TCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCA                                                       <  SRR4302533.322585/94‑1 (MQ=60)
                                       ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAT                                                     >  SRR4302533.1815682/1‑94 (MQ=60)
                                       ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAT                                                     >  SRR4302533.1855585/1‑94 (MQ=60)
                                       ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAT                                                     >  SRR4302533.4744352/1‑94 (MQ=60)
                                       ATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAAT                                                     >  SRR4302533.2174422/1‑94 (MQ=60)
                                        TCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATG                                                    <  SRR4302533.2105/94‑1 (MQ=60)
                                         CCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGT                                                   >  SRR4302533.2627645/1‑94 (MQ=60)
                                          CTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTT                                                  <  SRR4302533.3788706/94‑1 (MQ=60)
                                           TGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCCATATCTTCCAGCCCCAGACGCTGCAATGCTT                                                 >  SRR4302533.1225773/1‑94 (MQ=60)
                                            GATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCCGACGCTGCAATGTTTC                                                >  SRR4302533.1337078/1‑94 (MQ=60)
                                            GATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTC                                                <  SRR4302533.1097147/94‑1 (MQ=60)
                                            GATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTC                                                <  SRR4302533.1160277/94‑1 (MQ=60)
                                            GATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTC                                                <  SRR4302533.1446560/94‑1 (MQ=60)
                                               GGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCG                                             <  SRR4302533.1907713/94‑1 (MQ=60)
                                                  TCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGT                                          <  SRR4302533.1763524/94‑1 (MQ=60)
                                                   CATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTT                                         <  SRR4302533.4710056/94‑1 (MQ=60)
                                                    ATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTG                                        >  SRR4302533.2604315/1‑94 (MQ=60)
                                                      CTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGA                                      >  SRR4302533.5898108/1‑94 (MQ=60)
                                                      CTTACCCATGCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCCGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGA                                      <  SRR4302533.904113/94‑1 (MQ=60)
                                                       TTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGGC                                     >  SRR4302533.5451359/1‑94 (MQ=60)
                                                        TACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACA                                    <  SRR4302533.2886363/94‑1 (MQ=60)
                                                        TACCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACA                                    <  SRR4302533.124008/94‑1 (MQ=60)
                                                          CCCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAAC                                  >  SRR4302533.6012169/1‑94 (MQ=60)
                                                           CCATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCCGATCGGCGGCAATATCTTCAAGCCCCCGACCCTTCAATGTTTCGCGGGTTGGAGAACC                                 >  SRR4302533.5179106/1‑94 (MQ=60)
                                                            CATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCA                                >  SRR4302533.5031219/1‑94 (MQ=60)
                                                            CATTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCA                                <  SRR4302533.4101392/94‑1 (MQ=60)
                                                              TTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAG                              >  SRR4302533.4019493/1‑94 (MQ=60)
                                                              TTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAG                              <  SRR4302533.1877561/94‑1 (MQ=60)
                                                              TTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAG                              <  SRR4302533.4924247/94‑1 (MQ=60)
                                                              TTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAG                              <  SRR4302533.3466068/94‑1 (MQ=60)
                                                              TTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAG                              >  SRR4302533.3161004/1‑94 (MQ=60)
                                                              TTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAG                              <  SRR4302533.5377981/94‑1 (MQ=60)
                                                              TTCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGAAGCTGCAATGTTTCGCGGGTTGGACAACCAAG                              >  SRR4302533.2473206/1‑94 (MQ=60)
                                                               TCCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGC                             >  SRR4302533.5171081/1‑94 (MQ=60)
                                                                CCTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCT                            >  SRR4302533.5284714/1‑94 (MQ=60)
                                                                 CTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTG                           >  SRR4302533.4633474/1‑94 (MQ=60)
                                                                 CTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTG                           >  SRR4302533.1045129/1‑94 (MQ=60)
                                                                 CTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTG                           >  SRR4302533.3223731/1‑94 (MQ=60)
                                                                 CTTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCAAGACCCAGACGCTGCAATGTTTCGCGGGTTGGACAAacaacatg                           >  SRR4302533.5973598/1‑86 (MQ=60)
                                                                 CTTACGCAGGCAGTAGATTGTGTGACGCCAGATCGGTGGCAATATCTTCCAGCCACAGACGCTGCAATGTTTCGCGGGTTCGACAACCCAGCTG                           >  SRR4302533.1706084/1‑94 (MQ=60)
                                                                  TTACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGT                          <  SRR4302533.4775726/94‑1 (MQ=60)
                                                                   TACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTG                         <  SRR4302533.5467610/94‑1 (MQ=60)
                                                                   TACGCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTG                         <  SRR4302533.5179137/94‑1 (MQ=60)
                                                                      GCAGGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGT                      >  SRR4302533.2355974/1‑94 (MQ=60)
                                                                         GGCAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCCGGTTGGACAACCAAGCTGTGGGTCCC                   >  SRR4302533.912919/1‑94 (MQ=60)
                                                                           CAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAG                 >  SRR4302533.572312/1‑94 (MQ=60)
                                                                           CAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAG                 <  SRR4302533.4577148/94‑1 (MQ=60)
                                                                           CAGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAG                 >  SRR4302533.4381682/1‑94 (MQ=60)
                                                                            AGTAGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGC                >  SRR4302533.2386428/1‑94 (MQ=60)
                                                                               AGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCA             <  SRR4302533.1173200/94‑1 (MQ=60)
                                                                               AGATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCA             >  SRR4302533.1064136/1‑94 (MQ=60)
                                                                                 ATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATT           <  SRR4302533.187394/94‑1 (MQ=60)
                                                                                 ATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGGTGGACAACCAAGCTGTGGGTCCCAGCCCATT           >  SRR4302533.4805300/1‑94 (MQ=60)
                                                                                 ATTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGGTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATT           >  SRR4302533.3764525/1‑94 (MQ=60)
                                                                                  TTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTT          <  SRR4302533.6117159/94‑1 (MQ=60)
                                                                                  TTGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTT          <  SRR4302533.6117158/94‑1 (MQ=60)
                                                                                   TGTGTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTC         <  SRR4302533.2126145/94‑1 (MQ=60)
                                                                                      GTGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTT      <  SRR4302533.5258882/94‑1 (MQ=60)
                                                                                       TGCCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTTG     <  SRR4302533.5183271/94‑1 (MQ=60)
                                                                                         CCGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTTGTA   >  SRR4302533.3454877/1‑94 (MQ=60)
                                                                                          CGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTTGTAG  >  SRR4302533.1201035/1‑94 (MQ=60)
                                                                                          CGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGCTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTTGTAG  >  SRR4302533.4115194/1‑94 (MQ=60)
                                                                                          |                                                                                             
CGCCTCGTCAACTTCGCTGACTTTCGCTAACGGCAATTCATCCTGATGGTTCATCTTACCCATTCCTTACGCAGGCAGTAGATTGTGTGCTGCCAGATCGGCGGCAATATCTTCCAGCCCCAGACGCTGCAATGTTTCGCGGGTTGGACAACCAAGCTGTGGGTCCCAGCCCATTTCTTTGTAG  >  NC_000913/1749686‑1749869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑