Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,778,478 |
T→C |
A18A (GCT→GCC) |
ydiR → |
putative flavoprotein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,778,478 | 0 | T | C | 100.0%
| 627.2
/ NA
| 194 | A18A (GCT→GCC) | ydiR | putative flavoprotein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (92/102); total (92/102) |
Only 100 of 194 total aligned reads displayed.
AGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATG > NC_000913/1778389‑1778566
|
gaaAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAAc < 2:1329290/93‑1 (MQ=255)
gaaAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAAc < 2:4763351/93‑1 (MQ=255)
aaaGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACt < 1:764243/93‑1 (MQ=255)
aaaGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACt > 2:4553753/1‑93 (MQ=255)
aaGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTg < 1:4306491/93‑1 (MQ=255)
aGCCCTGAACTGAAGCCTACGGAGAAGAATCGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGt < 1:1725516/93‑1 (MQ=255)
ccTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTg > 1:5836135/1‑93 (MQ=255)
ccTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTg > 2:1962166/1‑93 (MQ=255)
ccTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTg > 2:3272259/1‑93 (MQ=255)
ccTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTg < 1:3041854/93‑1 (MQ=255)
tgaactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggc > 1:3373970/1‑93 (MQ=255)
tgaactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggc < 2:2063459/93‑1 (MQ=255)
gaactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggcg > 2:6063204/1‑93 (MQ=255)
gaactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggcg > 2:1035170/1‑93 (MQ=255)
aactgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggcgg < 2:2486992/93‑1 (MQ=255)
actgaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTggcggc < 1:1066330/93‑1 (MQ=255)
gaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCt < 2:2686687/93‑1 (MQ=255)
gaaGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCt > 2:3819665/1‑93 (MQ=255)
tACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCaa > 1:1107426/1‑93 (MQ=255)
aCGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAAt < 1:4775404/93‑1 (MQ=255)
cGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATg > 1:3062962/1‑93 (MQ=255)
cGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATg < 1:2728104/93‑1 (MQ=255)
ggAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATgg < 2:5837211/93‑1 (MQ=255)
gagaAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATggg < 2:5176366/93‑1 (MQ=255)
gagaAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATggg > 2:5457757/1‑93 (MQ=255)
aaCGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACa < 1:4385649/93‑1 (MQ=255)
aCGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAg > 2:3000410/1‑93 (MQ=255)
aCGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAg > 2:1227528/1‑93 (MQ=255)
cGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAgg < 2:4995369/93‑1 (MQ=255)
gATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGgt > 2:3594346/1‑93 (MQ=255)
tGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGgtgt > 1:420177/1‑93 (MQ=255)
tGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGgtgt > 2:2519340/1‑93 (MQ=255)
gAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTa > 1:5745128/1‑93 (MQ=255)
gAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTa < 2:6252888/93‑1 (MQ=255)
gTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATg > 1:3921908/1‑93 (MQ=255)
tCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGc > 1:5636364/1‑93 (MQ=255)
cAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGcc > 2:947411/1‑93 (MQ=255)
cAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGcc > 2:5714157/1‑93 (MQ=255)
cAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGcc > 1:3542277/1‑93 (MQ=255)
cAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGcc > 1:2963533/1‑93 (MQ=255)
aaTTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCa > 2:2957645/1‑93 (MQ=255)
ttAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCAtt > 2:4779192/1‑93 (MQ=255)
aaaCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGt < 2:1588246/93‑1 (MQ=255)
aaaCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGt < 2:720958/93‑1 (MQ=255)
aaCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTa > 1:1001250/1‑93 (MQ=255)
aaCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAAGTGTATGCCCTTGTa > 1:2097589/1‑93 (MQ=255)
aCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTAc > 2:2145385/1‑93 (MQ=255)
aCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTAc < 1:5354846/93‑1 (MQ=255)
aCAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTAc > 1:5310285/1‑93 (MQ=255)
cAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACa < 2:4339693/93‑1 (MQ=255)
cAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACa > 1:1584132/1‑93 (MQ=255)
cAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACa < 2:829469/93‑1 (MQ=255)
gCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACaaa > 1:2077122/1‑93 (MQ=255)
cGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACaaaa < 1:992482/93‑1 (MQ=255)
cGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACaaaa < 2:3933896/93‑1 (MQ=255)
cGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACaaaa < 1:1305456/93‑1 (MQ=255)
gTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAAt > 1:2854650/1‑93 (MQ=255)
tCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATa < 1:4509902/93‑1 (MQ=255)
tCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATa > 1:5251877/1‑93 (MQ=255)
tCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATa > 1:626079/1‑93 (MQ=255)
tCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATa > 1:3654481/1‑93 (MQ=255)
cTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAc < 2:5313900/93‑1 (MQ=255)
cTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAc < 2:1727996/93‑1 (MQ=255)
cTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAc < 2:4173694/93‑1 (MQ=255)
tGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAcc > 2:2364110/1‑93 (MQ=255)
tGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAcc < 2:469455/93‑1 (MQ=255)
cTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCa < 2:913134/93‑1 (MQ=255)
cTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCa < 2:2985153/93‑1 (MQ=255)
cTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCa > 2:4109173/1‑93 (MQ=255)
tttAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAg > 2:5096578/1‑93 (MQ=255)
tAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAATATACCGACCAGgc < 2:1578787/93‑1 (MQ=255)
gCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGgcgc < 1:1927807/93‑1 (MQ=255)
cGATAATACTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgca < 2:4976122/93‑1 (MQ=255)
gATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcag > 2:4804660/1‑93 (MQ=255)
aTAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcagg > 1:516552/1‑93 (MQ=255)
tAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcaggc < 1:1434553/93‑1 (MQ=255)
tAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcaggc > 1:317798/1‑93 (MQ=255)
tAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcaggc > 1:1801451/1‑93 (MQ=255)
tAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcaggc < 2:2824270/93‑1 (MQ=255)
tAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcaggc > 1:4682951/1‑93 (MQ=255)
aaTCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcaggca < 1:5942758/93‑1 (MQ=255)
aaTCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCgcaggca > 2:5583411/1‑93 (MQ=255)
tCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGt > 1:4803620/1‑93 (MQ=255)
tCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGt < 2:3425720/93‑1 (MQ=255)
ccTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGtt < 2:1206402/93‑1 (MQ=255)
ccTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGtt < 2:228062/93‑1 (MQ=255)
cTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTa < 1:5017669/93‑1 (MQ=255)
tGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTAt > 2:5742298/1‑93 (MQ=255)
aaCGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGc > 1:4133173/1‑93 (MQ=255)
aaCGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGc < 1:681388/93‑1 (MQ=255)
aaCGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGc > 1:2676113/1‑93 (MQ=255)
cGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCt < 1:390721/93‑1 (MQ=255)
cGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCt < 1:2645498/93‑1 (MQ=255)
gTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCtt < 2:4975350/93‑1 (MQ=255)
ttATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTa > 1:5085433/1‑93 (MQ=255)
ttATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTa < 1:5476451/93‑1 (MQ=255)
ttATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTa < 2:2605614/93‑1 (MQ=255)
tATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTAt < 2:3109446/93‑1 (MQ=255)
aTGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATg < 2:4019146/93‑1 (MQ=255)
aTGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATg < 1:4218287/93‑1 (MQ=255)
|
AGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATG > NC_000913/1778389‑1778566
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGAAGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCCA > NC_000913/1778386‑1778571
|
TGAAGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCG < SRR4302533.3192554/94‑1 (MQ=60)
AGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAAC > SRR4302533.5001109/1‑94 (MQ=60)
GAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACT > SRR4302533.4083554/1‑94 (MQ=60)
AAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTG < SRR4302533.5381249/94‑1 (MQ=60)
AAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTG < SRR4302533.5218029/94‑1 (MQ=60)
AAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTG < SRR4302533.768746/94‑1 (MQ=60)
AAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTG > SRR4302533.3006321/1‑94 (MQ=60)
AAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGT < SRR4302533.4332402/94‑1 (MQ=60)
AGCCCTGAACTGAAGCCTACGGAGAAGAATCGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTT < SRR4302533.1735986/94‑1 (MQ=60)
AGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTT > SRR4302533.3104299/1‑94 (MQ=60)
AGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATCAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTT > SRR4302533.4240443/1‑94 (MQ=60)
CCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTG > SRR4302533.5871401/1‑94 (MQ=60)
CCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGG < SRR4302533.3060474/94‑1 (MQ=60)
CCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGG < SRR4302533.5604699/94‑1 (MQ=60)
CTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGC > SRR4302533.3394806/1‑94 (MQ=60)
ACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCG < SRR4302533.1072594/94‑1 (MQ=60)
ACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCG > SRR4302533.277654/1‑94 (MQ=60)
CCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCA > SRR4302533.210393/1‑94 (MQ=60)
CCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCA < SRR4302533.3264384/94‑1 (MQ=60)
CTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAA > SRR4302533.1113991/1‑94 (MQ=60)
CTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAA > SRR4302533.5768949/1‑94 (MQ=60)
ACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGTGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATG < SRR4302533.17667/94‑1 (MQ=60)
ACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATG > SRR4302533.3081766/1‑94 (MQ=60)
ACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATG < SRR4302533.4804335/94‑1 (MQ=60)
CGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGG < SRR4302533.2744839/94‑1 (MQ=60)
GGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGG < SRR4302533.5421146/94‑1 (MQ=60)
AGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGC > SRR4302533.4400369/1‑94 (MQ=60)
AAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCA < SRR4302533.1211064/94‑1 (MQ=60)
AGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAA < SRR4302533.1623331/94‑1 (MQ=60)
AACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAG > SRR4302533.4721336/1‑94 (MQ=60)
AACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAG < SRR4302533.4412129/94‑1 (MQ=60)
ATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGT > SRR4302533.2684541/1‑94 (MQ=60)
ATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGT > SRR4302533.4249561/1‑94 (MQ=60)
ATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGT > SRR4302533.422692/1‑94 (MQ=60)
TGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTA > SRR4302533.5779795/1‑94 (MQ=60)
AGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATG > SRR4302533.3945858/1‑94 (MQ=60)
GTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGC > SRR4302533.5670447/1‑94 (MQ=60)
TCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCC > SRR4302533.702018/1‑94 (MQ=60)
TCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCC > SRR4302533.2981651/1‑94 (MQ=60)
TCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCC > SRR4302533.3564108/1‑94 (MQ=60)
AATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCAT < SRR4302533.2077613/94‑1 (MQ=60)
TAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGT < SRR4302533.1585927/94‑1 (MQ=60)
AAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTA > SRR4302533.1007096/1‑94 (MQ=60)
AAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAAGTGTATGCCCTTGTA > SRR4302533.2110502/1‑94 (MQ=60)
AACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTAC > SRR4302533.5342109/1‑94 (MQ=60)
ACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACA > SRR4302533.1593678/1‑94 (MQ=60)
ACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACA < SRR4302533.5386988/94‑1 (MQ=60)
AGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAA > SRR4302533.2089906/1‑94 (MQ=60)
CGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAAT < SRR4302533.998284/94‑1 (MQ=60)
CGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAAT > SRR4302533.2872215/1‑94 (MQ=60)
CGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAAT < SRR4302533.1313301/94‑1 (MQ=60)
GTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATA < SRR4302533.5341680/94‑1 (MQ=60)
GTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATA > SRR4302533.5283433/1‑94 (MQ=60)
GTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATA > SRR4302533.629754/1‑94 (MQ=60)
GTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATA > SRR4302533.3676947/1‑94 (MQ=60)
TCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAC > SRR4302533.4674959/1‑94 (MQ=60)
TCTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATAC < SRR4302533.4537214/94‑1 (MQ=60)
CTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACC > SRR4302533.2597796/1‑94 (MQ=60)
CTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACC < SRR4302533.2981105/94‑1 (MQ=60)
CTGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACC < SRR4302533.926937/94‑1 (MQ=60)
TGGGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCG < SRR4302533.1315793/94‑1 (MQ=60)
GGTCTTTAGCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGTGCCAACGGGTGTATGCCATTGTACAAAATACCGAC > SRR4302533.366623/1‑94 (MQ=60)
GGTCTTTAGCGATAATCCTGAACGTTATGACGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACgcac > SRR4302533.4448598/1‑90 (MQ=60)
CTTTNGNGATAATCCTGAACGTNATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAG < SRR4302533.4922116/94‑1 (MQ=60)
GCGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCA < SRR4302533.1939568/94‑1 (MQ=60)
CGATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAG > SRR4302533.5180148/1‑94 (MQ=60)
GATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGG > SRR4302533.519618/1‑94 (MQ=60)
GATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGG < SRR4302533.4194989/94‑1 (MQ=60)
GATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGG < SRR4302533.4822300/94‑1 (MQ=60)
ATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGC > SRR4302533.4711324/1‑94 (MQ=60)
ATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGC > SRR4302533.319748/1‑94 (MQ=60)
ATAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGC > SRR4302533.1812414/1‑94 (MQ=60)
TCATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCA < SRR4302533.5780737/94‑1 (MQ=60)
TAATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCA < SRR4302533.1443214/94‑1 (MQ=60)
AATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAG < SRR4302533.5978698/94‑1 (MQ=60)
AATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAG < SRR4302533.631924/94‑1 (MQ=60)
ATCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGT > SRR4302533.4832712/1‑94 (MQ=60)
TCCTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTT < SRR4302533.3933615/94‑1 (MQ=60)
CTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGTCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTAT < SRR4302533.5928892/94‑1 (MQ=60)
CTGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTAT < SRR4302533.5048063/94‑1 (MQ=60)
TGAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATG < SRR4302533.5994982/94‑1 (MQ=60)
GAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGC > SRR4302533.2692525/1‑94 (MQ=60)
GAACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGC > SRR4302533.4158263/1‑94 (MQ=60)
AACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCC < SRR4302533.685418/94‑1 (MQ=60)
ACGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGACAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCT < SRR4302533.3915313/94‑1 (MQ=60)
CGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTT < SRR4302533.2661754/94‑1 (MQ=60)
CGTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTT < SRR4302533.393086/94‑1 (MQ=60)
GTTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTA > SRR4302533.5116164/1‑94 (MQ=60)
TTATGCCGAACTGTTTGGCGGCGGTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAAGACCGACCAGGCGCAGGCAGTTATGCCTTAT < SRR4302533.2693132/94‑1 (MQ=60)
TTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTAT < SRR4302533.1109076/94‑1 (MQ=60)
TTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTAT < SRR4302533.5509464/94‑1 (MQ=60)
TTATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTAT < SRR4302533.3558129/94‑1 (MQ=60)
ATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGG < SRR4302533.1895929/94‑1 (MQ=60)
ATGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGG < SRR4302533.4243800/94‑1 (MQ=60)
TGCCGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGT > SRR4302533.4829193/1‑94 (MQ=60)
CGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCCA > SRR4302533.2092211/1‑94 (MQ=60)
CGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCCA > SRR4302533.2819311/1‑94 (MQ=60)
CGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCCA > SRR4302533.2830220/1‑94 (MQ=60)
CGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCCA < SRR4302533.4131571/94‑1 (MQ=60)
CGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGGGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCCA > SRR4302533.5940186/1‑94 (MQ=60)
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TGAAGAAAGCCCTGAACTGAAGCCTACGGAGAAGAAACGATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATGGGGCCAACAGGTGTATGCCATTGTACAAAATACCGACCAGGCGCAGGCAGTTATGCCTTATGGTCCA > NC_000913/1778386‑1778571
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
