Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,858,325	A→G	D344D (GAT→GAC)	b1776 ←	putative oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,858,325	0	A	G	100.0%	751.0 / NA	234	D344D (GAT→GAC)	b1776	putative oxidoreductase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (118/116); total (118/116)

Only 100 of 237 total aligned reads displayed.

GTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTATCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAA  >  NC_000913/1858235‑1858414

gTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTc                                                                                         <  1:1764214/93‑1 (MQ=255)

  tttGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGa                                                                                       >  2:5594214/1‑93 (MQ=255)

  tttGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGa                                                                                       >  2:3730912/1‑93 (MQ=255)

    tGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTCTTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGAcc                                                                                     <  2:6216521/93‑1 (MQ=255)

    tGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTTATTGCGGTTTTGTCGAcc                                                                                     <  2:1881851/93‑1 (MQ=255)

       tATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATc                                                                                  <  2:4176442/93‑1 (MQ=255)

       tATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATc                                                                                  <  1:5764459/93‑1 (MQ=255)

       tATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATc                                                                                  >  1:5908741/1‑93 (MQ=255)

       tATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATc                                                                                  >  2:3642871/1‑93 (MQ=255)

        aTCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCg                                                                                 >  1:5054604/1‑93 (MQ=255)

            gTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATc                                                                             >  1:1485158/1‑93 (MQ=255)

               ccATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCaaa                                                                          >  1:3147103/1‑93 (MQ=255)

                cATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAAc                                                                         >  2:4257021/1‑93 (MQ=255)

                cATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAAc                                                                         >  1:193598/1‑93 (MQ=255)

                cATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAAc                                                                         >  1:2585204/1‑93 (MQ=255)

                   gCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCt                                                                      >  2:543187/1‑93 (MQ=255)

                     gATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTc                                                                    >  2:873293/1‑93 (MQ=255)

                     gATAACGTTCCTTCAGGAGAGTGCTTATTCATCAAAGTCGTAAGTCATGATCGCTTTGAGTGCGGTTTTGTCGACCATCGCATCAAACCCTTc                                                                    <  2:2075238/93‑1 (MQ=255)

                      aTAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTcg                                                                   >  2:5005655/1‑93 (MQ=255)

                      aTAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTcg                                                                   <  2:3784233/93‑1 (MQ=255)

                      aTAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTcg                                                                   >  1:6081313/1‑93 (MQ=255)

                         aCGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCgcgc                                                                >  1:2236483/1‑93 (MQ=255)

                         aCGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCgcgc                                                                <  2:2866423/93‑1 (MQ=255)

                           gTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCa                                                              <  1:4848734/93‑1 (MQ=255)

                           gTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCa                                                              >  1:906448/1‑93 (MQ=255)

                           gTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCa                                                              >  2:3865393/1‑93 (MQ=255)

                           gTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCa                                                              >  2:5607283/1‑93 (MQ=255)

                           gTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCa                                                              >  1:3417365/1‑93 (MQ=255)

                             tCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCAtt                                                            <  2:1522762/93‑1 (MQ=255)

                             tCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCAtt                                                            >  1:5970847/1‑93 (MQ=255)

                             tCCTTCAGGAGAGTGGTTATTCATAAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCAtt                                                            >  2:4028030/1‑93 (MQ=255)

                              ccTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTg                                                           >  2:2453869/1‑93 (MQ=255)

                                  cAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGAc                                                       <  2:3469159/93‑1 (MQ=255)

                                  cAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGAc                                                       <  1:5396507/93‑1 (MQ=255)

                                   aGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACa                                                      >  1:2412182/1‑93 (MQ=255)

                                    ggAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCGCTTTGATTGCGGTTTTGTCGACCATCGCATCAATCCCTTCGCGCCATTGCGACAg                                                     <  1:2379317/93‑1 (MQ=255)

                                      agagTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGc                                                   >  2:1737462/1‑93 (MQ=255)

                                      agagTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGc                                                   <  1:2082099/93‑1 (MQ=255)

                                      agagTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGc                                                   >  1:2439270/1‑93 (MQ=255)

                                       gagTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGcc                                                  <  2:5045147/93‑1 (MQ=255)

                                         gTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGa                                                <  1:3049974/93‑1 (MQ=255)

                                          tGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGTTTTTGTCGACCATCGCATCAACCCCTTCGCGCCATTGCGACAGGCCGAt                                               <  2:2177681/93‑1 (MQ=255)

                                          tGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGAt                                               <  2:1947950/93‑1 (MQ=255)

                                          tGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGAt                                               >  2:1645126/1‑93 (MQ=255)

                                          tGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGAt                                               >  1:401221/1‑93 (MQ=255)

                                            gTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATAc                                             <  2:2982388/93‑1 (MQ=255)

                                            gTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATAc                                             <  1:4242462/93‑1 (MQ=255)

                                             ttATTCATCAAAGTCGTATGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCTTCAAACTCTTCGTGCCTTTGCGACAGGCCGATatg                                            >  2:6299930/1‑91 (MQ=255)

                                             ttATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACg                                            >  2:5078687/1‑93 (MQ=255)

                                              tATTCACCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTAGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGa                                           <  2:4645653/93‑1 (MQ=255)

                                               aTTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAGCCCTTCGCTCCATTGCGACAGGCCGATACGAt                                          <  2:4874826/93‑1 (MQ=255)

                                               aTTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGAt                                          >  1:4075469/1‑93 (MQ=255)

                                                ttCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATg                                         <  1:5293268/93‑1 (MQ=255)

                                                    tcaAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTg                                     >  2:2231859/1‑93 (MQ=255)

                                                    tcaAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTg                                     <  1:3113275/93‑1 (MQ=255)

                                                     caAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGa                                    <  2:4936141/93‑1 (MQ=255)

                                                       aaGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGatc                                  >  2:266534/1‑93 (MQ=255)

                                                       aaGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGatc                                  >  1:3921213/1‑93 (MQ=255)

                                                        aGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGatca                                 <  1:3352005/93‑1 (MQ=255)

                                                         gTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGatcat                                <  1:1462966/93‑1 (MQ=255)

                                                          tCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGatcatc                               >  1:2559063/1‑93 (MQ=255)

                                                          tCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGatcatc                               >  1:1038119/1‑93 (MQ=255)

                                                          tCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGatcatc                               <  1:2711309/93‑1 (MQ=255)

                                                           cGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCg                              <  1:2801256/93‑1 (MQ=255)

                                                           cGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCg                              <  1:4039514/93‑1 (MQ=255)

                                                           cGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCg                              <  2:3377870/93‑1 (MQ=255)

                                                            gTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCgg                             >  1:5209473/1‑93 (MQ=255)

                                                             tAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGt                            >  1:4775627/1‑93 (MQ=255)

                                                              aaGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGtt                           <  2:4600428/93‑1 (MQ=255)

                                                              aaGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGtt                           <  2:4549866/93‑1 (MQ=255)

                                                              aaGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGtt                           <  2:4758823/93‑1 (MQ=255)

                                                              aaGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGtt                           >  1:6162752/1‑93 (MQ=255)

                                                              aaGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGtt                           >  1:3249324/1‑93 (MQ=255)

                                                               aGTCATGATCACTTTGATTGCGTTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGttt                          <  2:3342448/93‑1 (MQ=255)

                                                               aGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGttt                          >  1:1678956/1‑93 (MQ=255)

                                                                 tCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGa                        >  1:3759888/1‑93 (MQ=255)

                                                                   aTGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACt                      >  2:2569125/1‑93 (MQ=255)

                                                                    tGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACtt                     <  2:573913/93‑1 (MQ=255)

                                                                     gATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACttt                    <  1:1165528/93‑1 (MQ=255)

                                                                     gATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACttt                    <  1:6208782/93‑1 (MQ=255)

                                                                       tCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGa                  <  1:1245333/93‑1 (MQ=255)

                                                                        cACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGAt                 >  2:1293641/1‑93 (MQ=255)

                                                                         aCTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATa                >  2:6098030/1‑93 (MQ=255)

                                                                         aCTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATa                <  1:987812/93‑1 (MQ=255)

                                                                          cTTTGATTGCGGTTTTGTCGACCATCGCATCAACCCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAg               <  2:3669449/93‑1 (MQ=255)

                                                                          cTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAg               <  2:2911856/93‑1 (MQ=255)

                                                                           tttGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgc              <  1:3886985/93‑1 (MQ=255)

                                                                           tttGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgc              <  1:5141491/93‑1 (MQ=255)

                                                                            ttGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgcg             >  1:2518894/1‑93 (MQ=255)

                                                                             tGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgcgc            >  1:79699/1‑93 (MQ=255)

                                                                              gATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGcgcc           >  1:3299856/1‑93 (MQ=255)

                                                                               aTTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGcgccg          <  2:854161/93‑1 (MQ=255)

                                                                                ttGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGcgccgc         >  1:5814660/1‑93 (MQ=255)

                                                                                ttGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGcgccgc         >  1:5695925/1‑93 (MQ=255)

                                                                                ttGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGcgccgc         <  2:4928805/93‑1 (MQ=255)

                                                                                ttGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGcgccgc         >  2:1357970/1‑93 (MQ=255)

                                                                                ttGCGGTTTGGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGcgccgc         <  2:4783186/93‑1 (MQ=255)

                                                                                 tGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCt        <  1:3599905/93‑1 (MQ=255)

                                                                                     gTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCt    >  2:5910449/1‑93 (MQ=255)

                                                                                       tttGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTaa  >  1:1506591/1‑93 (MQ=255)

GTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTATCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAA  >  NC_000913/1858235‑1858414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTATCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAGC  >  NC_000913/1858232‑1858418

GCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTT                                                                                               >  SRR4302533.5699413/1‑94 (MQ=60)

GCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTG                                                                                               <  SRR4302533.3962286/94‑1 (MQ=60)

GCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTG                                                                                               <  SRR4302533.879763/94‑1 (MQ=60)

GCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTG                                                                                               <  SRR4302533.1610069/94‑1 (MQ=60)

GCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTG                                                                                               <  SRR4302533.1523322/94‑1 (MQ=60)

 CGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGT                                                                                              <  SRR4302533.4875081/94‑1 (MQ=60)

 CGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGT                                                                                              >  SRR4302533.1276632/1‑94 (MQ=60)

 CGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGT                                                                                              <  SRR4302533.5340799/94‑1 (MQ=60)

  GGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTC                                                                                             <  SRR4302533.1117677/94‑1 (MQ=60)

  GGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTC                                                                                             >  SRR4302533.1840502/1‑94 (MQ=60)

  GGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTC                                                                                             <  SRR4302533.1225839/94‑1 (MQ=60)

  GGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGGGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTC                                                                                             >  SRR4302533.4043920/1‑94 (MQ=60)

   GTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCG                                                                                            >  SRR4302533.2669091/1‑94 (MQ=60)

   GTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCG                                                                                            <  SRR4302533.6090213/94‑1 (MQ=60)

   GTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCG                                                                                            <  SRR4302533.1774957/94‑1 (MQ=60)

   GTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCG                                                                                            <  SRR4302533.908822/94‑1 (MQ=60)

    TTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGA                                                                                           >  SRR4302533.1164178/1‑94 (MQ=60)

     TTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGAC                                                                                          <  SRR4302533.2330741/94‑1 (MQ=60)

         TTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATC                                                                                      >  SRR4302533.5944435/1‑94 (MQ=60)

          TATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCG                                                                                     >  SRR4302533.5085161/1‑94 (MQ=60)

          TATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCG                                                                                     <  SRR4302533.5799247/94‑1 (MQ=60)

           ATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGC                                                                                    >  SRR4302533.2030948/1‑94 (MQ=60)

           ATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGC                                                                                    <  SRR4302533.2615121/94‑1 (MQ=60)

             CTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCAT                                                                                  <  SRR4302533.3806183/94‑1 (MQ=60)

              TGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATC                                                                                 >  SRR4302533.1494121/1‑94 (MQ=60)

               GTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCA                                                                                >  SRR4302533.2000881/1‑94 (MQ=60)

                 TCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAA                                                                              <  SRR4302533.1647313/94‑1 (MQ=60)

                 TCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAA                                                                              >  SRR4302533.3166453/1‑94 (MQ=60)

                  CCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAAC                                                                             >  SRR4302533.6199994/1‑94 (MQ=60)

                  CCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAAC                                                                             >  SRR4302533.5244794/1‑94 (MQ=60)

                  CCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAAC                                                                             >  SRR4302533.194819/1‑94 (MQ=60)

                  CCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAAC                                                                             >  SRR4302533.2601098/1‑94 (MQ=60)

                   CATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACC                                                                            <  SRR4302533.4204842/94‑1 (MQ=60)

                   CATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACC                                                                            >  SRR4302533.3483128/1‑94 (MQ=60)

                      GCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTT                                                                         <  SRR4302533.3079199/94‑1 (MQ=60)

                      GCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTT                                                                         <  SRR4302533.1396417/94‑1 (MQ=60)

                        GATAACGTTCCTTCAGGAGCGGGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCG                                                                       >  SRR4302533.6118089/1‑94 (MQ=60)

                        GATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCG                                                                       <  SRR4302533.3166229/94‑1 (MQ=60)

                        GATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCG                                                                       <  SRR4302533.1694151/94‑1 (MQ=60)

                        GATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCG                                                                       <  SRR4302533.2918230/94‑1 (MQ=60)

                        GATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCG                                                                       >  SRR4302533.6118088/1‑94 (MQ=60)

                         ATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGC                                                                      >  SRR4302533.677556/1‑94 (MQ=60)

                          TAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCG                                                                     >  SRR4302533.2208673/1‑94 (MQ=60)

                          TAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCG                                                                     >  SRR4302533.2403080/1‑94 (MQ=60)

                           AACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGC                                                                    >  SRR4302533.2250309/1‑94 (MQ=60)

                           AACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGC                                                                    <  SRR4302533.2542691/94‑1 (MQ=60)

                             CGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCA                                                                  >  SRR4302533.3438483/1‑94 (MQ=60)

                             CGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCA                                                                  >  SRR4302533.911762/1‑94 (MQ=60)

                              GTTTCTGCAGGATAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGGCGACCATCGCATCAACCCCTTCGCGCCAT                                                                 <  SRR4302533.4878118/94‑1 (MQ=60)

                              GTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCAT                                                                 <  SRR4302533.4878117/94‑1 (MQ=60)

                              GTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCAT                                                                 >  SRR4302533.4850564/1‑94 (MQ=60)

                               TTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATT                                                                <  SRR4302533.5186453/94‑1 (MQ=60)

                               TTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATT                                                                >  SRR4302533.6006992/1‑94 (MQ=60)

                               TTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATT                                                                >  SRR4302533.1201211/1‑94 (MQ=60)

                                    TCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGAC                                                           <  SRR4302533.2256422/94‑1 (MQ=60)

                                    TCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGAC                                                           >  SRR4302533.4081142/1‑94 (MQ=60)

                                    TCAGGAGAGTGGTTATTCATCAAAGTCGTAAGATCTGATCACTTTGATTGCGGTTTTGTCGCCAATCGCATCAAACCCTTCGCGCCATTCCGAC                                                           <  SRR4302533.4023496/94‑1 (MQ=60)

                                     CAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACA                                                          <  SRR4302533.5428935/94‑1 (MQ=60)

                                     CAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACA                                                          >  SRR4302533.2427082/1‑94 (MQ=60)

                                     CAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACA                                                          <  SRR4302533.3360010/94‑1 (MQ=60)

                                     CAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACA                                                          >  SRR4302533.6043260/1‑94 (MQ=60)

                                      AGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAG                                                         <  SRR4302533.3933654/94‑1 (MQ=60)

                                      AGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAG                                                         >  SRR4302533.5586462/1‑94 (MQ=60)

                                       GGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCGCTTTGATTGCGGTTTTGTCGACCATCGCATCAATCCCTTCGCGCCATTGCGACAGG                                                        <  SRR4302533.2394036/94‑1 (MQ=60)

                                       GGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGG                                                        <  SRR4302533.3693792/94‑1 (MQ=60)

                                        GAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGC                                                       <  SRR4302533.5871206/94‑1 (MQ=60)

                                        GAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGC                                                       >  SRR4302533.2454334/1‑94 (MQ=60)

                                         AGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCC                                                      <  SRR4302533.397580/94‑1 (MQ=60)

                                         AGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCC                                                      <  SRR4302533.2094914/94‑1 (MQ=60)

                                            GTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGAT                                                   <  SRR4302533.3068641/94‑1 (MQ=60)

                                            GTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGAT                                                   >  SRR4302533.403641/1‑94 (MQ=60)

                                              GGTTATTCATCAAAGTCTTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATAC                                                 <  SRR4302533.4227098/94‑1 (MQ=60)

                                              GGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATAC                                                 >  SRR4302533.3375403/1‑94 (MQ=60)

                                               GTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACG                                                <  SRR4302533.4268078/94‑1 (MQ=60)

                                               GTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACG                                                <  SRR4302533.3799480/94‑1 (MQ=60)

                                                 TATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGAT                                              >  SRR4302533.4100278/1‑94 (MQ=60)

                                                   TTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGC                                            <  SRR4302533.5324954/94‑1 (MQ=60)

                                                    TCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCG                                           <  SRR4302533.2831313/94‑1 (MQ=60)

                                                    TCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCG                                           <  SRR4302533.2492886/94‑1 (MQ=60)

                                                     CATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGT                                          >  SRR4302533.5996365/1‑94 (MQ=60)

                                                     CATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGT                                          >  SRR4302533.2599420/1‑94 (MQ=60)

                                                     CATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGT                                          >  SRR4302533.3376070/1‑94 (MQ=60)

                                                      ATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTG                                         <  SRR4302533.5890116/94‑1 (MQ=60)

                                                      ATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTG                                         <  SRR4302533.5695385/94‑1 (MQ=60)

                                                       TCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGA                                        <  SRR4302533.3132421/94‑1 (MQ=60)

                                                        CAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGAT                                       >  SRR4302533.4398591/1‑94 (MQ=60)

                                                         AAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATC                                      >  SRR4302533.3945159/1‑94 (MQ=60)

                                                         AAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATC                                      >  SRR4302533.1508393/1‑94 (MQ=60)

                                                          AAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCA                                     >  SRR4302533.1519356/1‑94 (MQ=60)

                                                           AGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCAT                                    <  SRR4302533.5068730/94‑1 (MQ=60)

                                                           AGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCAT                                    <  SRR4302533.3372710/94‑1 (MQ=60)

                                                           AGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCAT                                    <  SRR4302533.5345646/94‑1 (MQ=60)

                                                            GTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATC                                   <  SRR4302533.1471784/94‑1 (MQ=60)

                                                            GTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATC                                   >  SRR4302533.2574798/1‑94 (MQ=60)

                                                            GTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATC                                   >  SRR4302533.1044219/1‑94 (MQ=60)

                                                             TCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCG                                  <  SRR4302533.2727953/94‑1 (MQ=60)

                                                              CGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGG                                 <  SRR4302533.2818486/94‑1 (MQ=60)

                                                              CGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGG                                 >  SRR4302533.5779335/1‑94 (MQ=60)

                                                              CGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGG                                 <  SRR4302533.4064094/94‑1 (MQ=60)

                                                              CGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGG                                 >  SRR4302533.5240850/1‑94 (MQ=60)

                                                               GTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGT                                >  SRR4302533.4804560/1‑94 (MQ=60)

                                                               GTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGT                                >  SRR4302533.3207454/1‑94 (MQ=60)

                                                                TAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTT                               >  SRR4302533.3269359/1‑94 (MQ=60)

                                                                TAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTT                               >  SRR4302533.6199806/1‑94 (MQ=60)

                                                                 AAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTT                              >  SRR4302533.1689125/1‑94 (MQ=60)

                                                                  AGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTG                             <  SRR4302533.5849205/94‑1 (MQ=60)

                                                                   GTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGA                            >  SRR4302533.3782937/1‑94 (MQ=60)

                                                                     CATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACT                          >  SRR4302533.693401/1‑94 (MQ=60)

                                                                      ATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTT                         >  SRR4302533.5222966/1‑94 (MQ=60)

                                                                       TGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTT                        <  SRR4302533.3295890/94‑1 (MQ=60)

                                                                        GATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTG                       <  SRR4302533.6246022/94‑1 (MQ=60)

                                                                        GATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTG                       <  SRR4302533.1172516/94‑1 (MQ=60)

                                                                          TCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGAT                     <  SRR4302533.1252767/94‑1 (MQ=60)

                                                                          TCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGAT                     <  SRR4302533.2498151/94‑1 (MQ=60)

                                                                            ACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGCTACGATGCGTGATCATCGGTTTGACTTTGATAG                   >  SRR4302533.958643/1‑94 (MQ=60)

                                                                            ACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGCTTATCGGTTTGAGTTTGATAG                   >  SRR4302533.3253140/1‑94 (MQ=60)

                                                                            ACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAG                   <  SRR4302533.993591/94‑1 (MQ=60)

                                                                            ACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAG                   <  SRR4302533.1490344/94‑1 (MQ=60)

                                                                              TTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCG                 >  SRR4302533.2534415/1‑94 (MQ=60)

                                                                              TTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCG                 <  SRR4302533.5172564/94‑1 (MQ=60)

                                                                              TTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCG                 <  SRR4302533.3910698/94‑1 (MQ=60)

                                                                               TTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGC                >  SRR4302533.80210/1‑94 (MQ=60)

                                                                                TGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCC               >  SRR4302533.3320222/1‑94 (MQ=60)

                                                                                 GATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCG              >  SRR4302533.2453565/1‑94 (MQ=60)

                                                                                 GATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCG              >  SRR4302533.2750924/1‑94 (MQ=60)

                                                                                 GATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCG              >  SRR4302533.5142659/1‑94 (MQ=60)

                                                                                  ATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGC             >  SRR4302533.5730336/1‑94 (MQ=60)

                                                                                  ATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGC             >  SRR4302533.5849779/1‑94 (MQ=60)

                                                                                    TGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTG           <  SRR4302533.3622052/94‑1 (MQ=60)

                                                                                        GTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTA       <  SRR4302533.1401569/94‑1 (MQ=60)

                                                                                         TTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAA      >  SRR4302533.1515674/1‑94 (MQ=60)

                                                                                           TTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATA    >  SRR4302533.1883528/1‑94 (MQ=60)

                                                                                           TTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATA    <  SRR4302533.3470016/94‑1 (MQ=60)

                                                                                            TGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAG   <  SRR4302533.4629106/94‑1 (MQ=60)

                                                                                            TGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAG   >  SRR4302533.46719/1‑94 (MQ=60)

                                                                                            TGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAG   >  SRR4302533.979340/1‑94 (MQ=60)

                                                                                             GTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAGC  <  SRR4302533.316683/94‑1 (MQ=60)

                                                                                             GTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAGC  <  SRR4302533.2507241/94‑1 (MQ=60)

GCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTATCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAGC  >  NC_000913/1858232‑1858418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`