Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,871,984	A→G	E129E (GAA→GAG)	yeaK →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,871,984	0	A	G	100.0%	792.9 / NA	245	E129E (GAA→GAG)	yeaK	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (114/131); total (114/131)

Only 100 of 252 total aligned reads displayed.

ATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAG  >  NC_000913/1871896‑1872072

aTGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAt                                                                                      >  2:2071367/1‑93 (MQ=255)

 tGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAtt                                                                                     <  1:2044079/93‑1 (MQ=255)

  gAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAACCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAttt                                                                                    <  2:5336152/93‑1 (MQ=255)

  gAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGCttt                                                                                    >  2:3376927/1‑93 (MQ=255)

  gAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAttt                                                                                    >  2:5421674/1‑93 (MQ=255)

   aaCTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtg                                                                                   >  1:3650527/1‑93 (MQ=255)

   aaCTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtg                                                                                   <  2:1243001/93‑1 (MQ=255)

    aCTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtga                                                                                  <  2:1057909/93‑1 (MQ=255)

      tCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtgatg                                                                                <  1:1126822/93‑1 (MQ=255)

      tCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtgatg                                                                                >  2:155205/1‑93 (MQ=255)

      tCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtgatg                                                                                >  2:2668975/1‑93 (MQ=255)

       cacaGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtgatga                                                                               <  2:4323365/93‑1 (MQ=255)

        acaGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGATGCCGACCCTCTACTCTTCGAGCGATTTGATGaa                                                                              >  1:2423262/1‑93 (MQ=255)

          aGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAAt                                                                            <  2:2924825/93‑1 (MQ=255)

          aGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAAt                                                                            >  1:1656325/1‑93 (MQ=255)

          aGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAAt                                                                            <  2:5727787/93‑1 (MQ=255)

           ggCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATc                                                                           >  2:2347087/1‑93 (MQ=255)

           ggCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATc                                                                           >  1:1932828/1‑93 (MQ=255)

           ggCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATc                                                                           <  1:3256971/93‑1 (MQ=255)

             cTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGc                                                                         >  1:3050635/1‑93 (MQ=255)

               gtgtCTTCGGTGCGATCCCCCCTGTCAGCTGTCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGATATCGCCt                                                                       >  2:6303578/1‑93 (MQ=255)

               gtgtCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCt                                                                       >  2:5055502/1‑93 (MQ=255)

               gtgtCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCt                                                                       <  1:309949/93‑1 (MQ=255)

                tgtCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCtt                                                                      >  2:88113/1‑93 (MQ=255)

                tgtCGTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAATCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCtt                                                                      <  1:1058531/93‑1 (MQ=255)

                  tCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCa                                                                    >  1:5089466/1‑93 (MQ=255)

                   cTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCaa                                                                   <  1:4128763/93‑1 (MQ=255)

                     tCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATg                                                                 <  2:1792619/93‑1 (MQ=255)

                     tCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATg                                                                 >  2:2558761/1‑93 (MQ=255)

                      cGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGc                                                                <  1:5402119/93‑1 (MQ=255)

                      cGGCGCGACCCCCCCTTTCAGC‑TCCAATCAAAACCTAAACCGGTTGCCCACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCa                                                               <  1:151558/93‑1 (MQ=255)

                       ggCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCa                                                               <  2:4543589/93‑1 (MQ=255)

                        gcgcGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCTATTTGATGAAATCGCCTTCAATGCAg                                                              <  2:527509/93‑1 (MQ=255)

                         cgcgAACCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAgg                                                             <  1:957186/93‑1 (MQ=255)

                           cgATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCa                                                           <  1:3942126/93‑1 (MQ=255)

                            gATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGGTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAt                                                          >  2:5519475/1‑93 (MQ=255)

                            caTCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAt                                                          <  2:4289388/92‑1 (MQ=255)

                             aTCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATg                                                         >  1:291989/1‑93 (MQ=255)

                               ccccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCt                                                       <  2:4333733/93‑1 (MQ=255)

                                  cccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGa                                                    >  2:4997012/1‑93 (MQ=255)

                                   ccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGAt                                                   >  1:5926712/1‑93 (MQ=255)

                                   ccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGAt                                                   <  2:2209268/93‑1 (MQ=255)

                                       tCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAAt                                               >  2:3745690/1‑93 (MQ=255)

                                       tCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAAt                                               <  1:801838/93‑1 (MQ=255)

                                        cAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATc                                              <  2:3196728/93‑1 (MQ=255)

                                        cAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATc                                              <  1:6140381/93‑1 (MQ=255)

                                         aGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATcc                                             >  1:2238799/1‑93 (MQ=255)

                                          gCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCg                                            >  1:585746/1‑93 (MQ=255)

                                          gCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCg                                            >  1:2621629/1‑93 (MQ=255)

                                           gtgccattcaAAACTCAAACTGGTTGCCCACCCTCTCCTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGt                                           <  1:4696744/90‑1 (MQ=255)

                                           cTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGt                                           <  1:3138378/93‑1 (MQ=255)

                                           cTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGt                                           <  1:2216386/93‑1 (MQ=255)

                                              ccatccaAAACTCAAACTGGTTGCCTACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAt                                        <  2:5941017/93‑1 (MQ=255)

                                              ccatccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAt                                        <  1:5452100/93‑1 (MQ=255)

                                               catccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAtt                                       >  1:3356202/1‑93 (MQ=255)

                                                atccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAttt                                      <  1:1411555/93‑1 (MQ=255)

                                                 tccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAtttt                                     >  1:130406/1‑93 (MQ=255)

                                                  ccaaaaccaaaaCTGGTTGCCGACCCTCTTCTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTg                                    <  1:4911204/93‑1 (MQ=255)

                                                  ccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTg                                    >  2:3642041/1‑93 (MQ=255)

                                                   caAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGa                                   >  1:2810333/1‑93 (MQ=255)

                                                    aaaaCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGaa                                  >  1:498826/1‑93 (MQ=255)

                                                     aaaCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGaaa                                 <  1:4810929/93‑1 (MQ=255)

                                                      aaCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGaaaa                                <  1:2581404/93‑1 (MQ=255)

                                                       aCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAc                               <  2:4145796/93‑1 (MQ=255)

                                                        cTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAcc                              <  1:2138308/93‑1 (MQ=255)

                                                        cTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAcc                              >  1:53564/1‑93 (MQ=255)

                                                        cTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAcc                              <  1:4024697/93‑1 (MQ=255)

                                                         tCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGTAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACcg                             >  1:4443831/1‑93 (MQ=255)

                                                          cAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACcgc                            <  2:3016139/93‑1 (MQ=255)

                                                           aaaCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACcgcg                           <  2:2628458/93‑1 (MQ=255)

                                                           aaaCTGGTAGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACcgcg                           >  2:6117736/1‑93 (MQ=255)

                                                             aCTGGTTGCTGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGa                         <  2:6237422/93‑1 (MQ=255)

                                                             aCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGa                         <  1:5286360/93‑1 (MQ=255)

                                                             aCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGa                         <  2:750325/93‑1 (MQ=255)

                                                              cTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGat                        >  1:3233771/1‑93 (MQ=255)

                                                                 gTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGattat                     >  1:55961/1‑93 (MQ=255)

                                                                 gTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGattat                     <  1:3128493/93‑1 (MQ=255)

                                                                     ccGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgc                 >  1:6012074/1‑93 (MQ=255)

                                                                     ccGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgc                 <  1:6119642/93‑1 (MQ=255)

                                                                      cGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcg                <  2:5785668/93‑1 (MQ=255)

                                                                      cGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcg                >  1:1894184/1‑93 (MQ=255)

                                                                       gACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgc               >  2:1929571/1‑93 (MQ=255)

                                                                       gACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgc               >  2:2722092/1‑93 (MQ=255)

                                                                          ccTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcatt            <  2:866037/93‑1 (MQ=255)

                                                                          ccTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcatt            <  2:6046005/93‑1 (MQ=255)

                                                                          ccTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcatt            <  2:5972231/93‑1 (MQ=255)

                                                                          ccTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcatt            <  1:5759432/93‑1 (MQ=255)

                                                                          ccTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcatt            <  1:2491533/93‑1 (MQ=255)

                                                                           ctctACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattg           >  1:3561245/1‑93 (MQ=255)

                                                                            tctACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgc          >  2:3551309/1‑93 (MQ=255)

                                                                            tctACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgc          >  1:4767717/1‑93 (MQ=255)

                                                                              tACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgcgc        <  1:5123999/93‑1 (MQ=255)

                                                                               aCTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgcgca       >  2:1388398/1‑93 (MQ=255)

                                                                                ctctTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCaa      >  1:6199553/1‑93 (MQ=255)

                                                                                ctctTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCaa      >  2:228617/1‑93 (MQ=255)

                                                                                ctctTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCaa      >  2:4744135/1‑93 (MQ=255)

                                                                                 tctTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAc     >  1:4701859/1‑93 (MQ=255)

                                                                                   ttCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCa   <  1:4321189/93‑1 (MQ=255)

                                                                                   ttCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCa   <  2:1172483/93‑1 (MQ=255)

                                                                                    tCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAg  >  1:4201091/1‑93 (MQ=255)

ATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAG  >  NC_000913/1871896‑1872072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACTG  >  NC_000913/1871893‑1872077

TCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCG                                                                                             <  SRR4302533.3007499/94‑1 (MQ=60)

  GATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAT                                                                                           >  SRR4302533.434580/1‑94 (MQ=60)

    TGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTT                                                                                         <  SRR4302533.2056679/94‑1 (MQ=60)

    TGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTT                                                                                         <  SRR4302533.824769/94‑1 (MQ=60)

     GAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTG                                                                                        >  SRR4302533.3672973/1‑94 (MQ=60)

      AACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGA                                                                                       <  SRR4302533.4109588/94‑1 (MQ=60)

       ACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGAT                                                                                      >  SRR4302533.2599996/1‑94 (MQ=60)

         TCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGA                                                                                    <  SRR4302533.1133514/94‑1 (MQ=60)

          CACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGATGCCGACCCTCTACTCTTCGAGCGATTTGATGAA                                                                                   >  SRR4302533.2438219/1‑94 (MQ=60)

           ACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAA                                                                                  >  SRR4302533.315551/1‑94 (MQ=60)

            CAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAAT                                                                                 <  SRR4302533.60987/94‑1 (MQ=60)

            CAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAAT                                                                                 >  SRR4302533.1666348/1‑94 (MQ=60)

             AGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATC                                                                                >  SRR4302533.2236387/1‑94 (MQ=60)

             AGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATC                                                                                >  SRR4302533.1944618/1‑94 (MQ=60)

              GGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCG                                                                               <  SRR4302533.5131263/94‑1 (MQ=60)

              GGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCG                                                                               <  SRR4302533.3277058/94‑1 (MQ=60)

               GCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGC                                                                              <  SRR4302533.5472509/94‑1 (MQ=60)

               GCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGC                                                                              >  SRR4302533.3069306/1‑94 (MQ=60)

                  GTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTT                                                                           <  SRR4302533.5960478/94‑1 (MQ=60)

                  GTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTT                                                                           <  SRR4302533.311845/94‑1 (MQ=60)

                   TGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGGCTTC                                                                          >  SRR4302533.267967/1‑94 (MQ=60)

                   TGTCGTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAATCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTC                                                                          <  SRR4302533.1064757/94‑1 (MQ=60)

                    GTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCA                                                                         >  SRR4302533.3294907/1‑94 (MQ=60)

                    GTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCA                                                                         >  SRR4302533.5120216/1‑94 (MQ=60)

                    GTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCA                                                                         >  SRR4302533.5829808/1‑94 (MQ=60)

                     TCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAA                                                                        <  SRR4302533.2553021/94‑1 (MQ=60)

                     TCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAA                                                                        <  SRR4302533.3130583/94‑1 (MQ=60)

                      CTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAT                                                                       >  SRR4302533.3031961/1‑94 (MQ=60)

                      CTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAT                                                                       <  SRR4302533.6080921/94‑1 (MQ=60)

                      CTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAT                                                                       <  SRR4302533.6211973/94‑1 (MQ=60)

                      CTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAT                                                                       <  SRR4302533.4153824/94‑1 (MQ=60)

                       TTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATG                                                                      <  SRR4302533.4097711/94‑1 (MQ=60)

                         CGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCA                                                                    <  SRR4302533.5434582/94‑1 (MQ=60)

                         CGGCGCGACCCCCCCTTTCAGC‑TCCAATCAAAACCTAAACCGGTTGCCCACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAG                                                                   <  SRR4302533.152527/94‑1 (MQ=48)

                            CGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGC                                                                 >  SRR4302533.5990432/1‑94 (MQ=60)

                            CGCGAACCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGC                                                                 <  SRR4302533.962815/94‑1 (MQ=60)

                             GCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCA                                                                <  SRR4302533.5412415/94‑1 (MQ=60)

                              CGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAT                                                               <  SRR4302533.3966178/94‑1 (MQ=60)

                              CGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAT                                                               <  SRR4302533.1097208/94‑1 (MQ=60)

                              CGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAT                                                               <  SRR4302533.760977/94‑1 (MQ=60)

                              CGACCCCCCCTTTCAGCTTCCATCCAAACCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAT                                                               <  SRR4302533.6180900/94‑1 (MQ=60)

                               GATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATG                                                              <  SRR4302533.3789811/94‑1 (MQ=60)

                               GATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATG                                                              >  SRR4302533.293772/1‑94 (MQ=60)

                                ATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGC                                                             >  SRR4302533.2798239/1‑94 (MQ=60)

                                 TCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTTCTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCT                                                            >  SRR4302533.2566964/1‑94 (MQ=60)

                                  CCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGCGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTG                                                           >  SRR4302533.4973373/1‑94 (MQ=60)

                                   CCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGG                                                          >  SRR4302533.4167057/1‑94 (MQ=60)

                                    CCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGA                                                         >  SRR4302533.4738793/1‑94 (MQ=60)

                                     CCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGAT                                                        <  SRR4302533.953861/94‑1 (MQ=60)

                                     CCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGAT                                                        >  SRR4302533.5962537/1‑94 (MQ=60)

                                     CCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGAT                                                        <  SRR4302533.3970510/94‑1 (MQ=60)

                                          TCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATC                                                   <  SRR4302533.806551/94‑1 (MQ=60)

                                           CAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCC                                                  <  SRR4302533.470037/94‑1 (MQ=60)

                                           CAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCC                                                  <  SRR4302533.6177365/94‑1 (MQ=60)

                                           CAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCC                                                  >  SRR4302533.2252633/1‑94 (MQ=60)

                                           CAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTCCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCC                                                  <  SRR4302533.3254882/94‑1 (MQ=60)

                                            AGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCG                                                 >  SRR4302533.21733/1‑94 (MQ=60)

                                            AGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCG                                                 >  SRR4302533.589200/1‑94 (MQ=60)

                                            AGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCG                                                 >  SRR4302533.2637719/1‑94 (MQ=60)

                                             GCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGT                                                >  SRR4302533.5549560/1‑94 (MQ=60)

                                              gtgccattCAAAACTCAAACTGGTTGCCCACCCTCTCCTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTT                                               <  SRR4302533.4725218/86‑1 (MQ=60)

                                              CTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTT                                               <  SRR4302533.2230070/94‑1 (MQ=60)

                                              CTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTT                                               <  SRR4302533.3157672/94‑1 (MQ=60)

                                              CTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTT                                               <  SRR4302533.2450247/94‑1 (MQ=60)

                                              CTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTT                                               <  SRR4302533.4725219/94‑1 (MQ=60)

                                                TCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAT                                             <  SRR4302533.552408/94‑1 (MQ=60)

                                                 CCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATT                                            <  SRR4302533.5484941/94‑1 (MQ=60)

                                                 CCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATT                                            >  SRR4302533.3376938/1‑94 (MQ=60)

                                                   ATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTT                                          <  SRR4302533.3549809/94‑1 (MQ=60)

                                                   ATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTT                                          >  SRR4302533.131223/1‑94 (MQ=60)

                                                   ATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTT                                          <  SRR4302533.1420089/94‑1 (MQ=60)

                                                    TCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTG                                         <  SRR4302533.5795198/94‑1 (MQ=60)

                                                    TCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTG                                         >  SRR4302533.5426738/1‑94 (MQ=60)

                                                     CCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGA                                        >  SRR4302533.2827627/1‑94 (MQ=60)

                                                     CCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGA                                        >  SRR4302533.2360209/1‑94 (MQ=60)

                                                     CCAAAACCAAAACTGGTTGCCGACCCTCTTCTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGA                                        <  SRR4302533.4940956/94‑1 (MQ=60)

                                                      CAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAA                                       >  SRR4302533.501795/1‑94 (MQ=60)

                                                        AAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATGGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAC                                     >  SRR4302533.5708658/1‑94 (MQ=60)

                                                        AAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAA                                     <  SRR4302533.6037626/94‑1 (MQ=60)

                                                        AAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAA                                     <  SRR4302533.4840088/94‑1 (MQ=60)

                                                        AAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAA                                     <  SRR4302533.3700026/94‑1 (MQ=60)

                                                        AAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAA                                     >  SRR4302533.1331697/1‑94 (MQ=60)

                                                         AACTCAAACTGGTTGCCGACTCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAC                                    <  SRR4302533.2995105/94‑1 (MQ=60)

                                                         AACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAC                                    <  SRR4302533.2597283/94‑1 (MQ=60)

                                                         AACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAC                                    <  SRR4302533.2888245/94‑1 (MQ=60)

                                                         AACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAC                                    <  SRR4302533.1153259/94‑1 (MQ=60)

                                                          ACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACC                                   >  SRR4302533.53927/1‑94 (MQ=60)

                                                           CTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGTAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCG                                  >  SRR4302533.4470711/1‑94 (MQ=60)

                                                           CTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCG                                  <  SRR4302533.4049199/94‑1 (MQ=60)

                                                           CTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCG                                  <  SRR4302533.2151492/94‑1 (MQ=60)

                                                           CTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCG                                  >  SRR4302533.2216165/1‑94 (MQ=60)

                                                           CTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCG                                  <  SRR4302533.4879561/94‑1 (MQ=60)

                                                             CAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCG                                <  SRR4302533.3282539/94‑1 (MQ=60)

                                                              AAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAACGCGG                               >  SRR4302533.3616361/1‑94 (MQ=60)

                                                                ACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGAT                             >  SRR4302533.4290778/1‑94 (MQ=60)

                                                                ACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGAT                             <  SRR4302533.5318024/94‑1 (MQ=60)

                                                                ACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGAT                             >  SRR4302533.5265425/1‑94 (MQ=60)

                                                                ACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGAT                             <  SRR4302533.4590642/94‑1 (MQ=60)

                                                                ACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGAT                             <  SRR4302533.3111573/94‑1 (MQ=60)

                                                                ACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGAT                             >  SRR4302533.3253697/1‑94 (MQ=60)

                                                                 CTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATT                            >  SRR4302533.2130938/1‑94 (MQ=60)

                                                                   GGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTAT                          >  SRR4302533.4766745/1‑94 (MQ=60)

                                                                   GGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTAT                          >  SRR4302533.56335/1‑94 (MQ=60)

                                                                    GTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATT                         <  SRR4302533.3412639/94‑1 (MQ=60)

                                                                    GTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATT                         >  SRR4302533.3130875/1‑94 (MQ=60)

                                                                    GTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATT                         <  SRR4302533.6173763/94‑1 (MQ=60)

                                                                    GTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATT                         <  SRR4302533.3147725/94‑1 (MQ=60)

                                                                      TGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTG                       <  SRR4302533.1236419/94‑1 (MQ=60)

                                                                      TGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTG                       <  SRR4302533.19921/94‑1 (MQ=60)

                                                                       GCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGC                      >  SRR4302533.6048497/1‑94 (MQ=60)

                                                                        CCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCG                     <  SRR4302533.6156547/94‑1 (MQ=60)

                                                                        CCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCG                     >  SRR4302533.1905747/1‑94 (MQ=60)

                                                                        CCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCG                     <  SRR4302533.1581142/94‑1 (MQ=60)

                                                                          GACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCA                   >  SRR4302533.4349179/1‑94 (MQ=60)

                                                                           ACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCG‑TATTTTGAAAACCGCGGATTATTTGCGCATT                 >  SRR4302533.1731441/1‑94 (MQ=60)

                                                                            CCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATT                 >  SRR4302533.1424395/1‑94 (MQ=60)

                                                                            CCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATT                 <  SRR4302533.3216205/94‑1 (MQ=60)

                                                                             CCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTG                <  SRR4302533.2506878/94‑1 (MQ=60)

                                                                             CCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTG                <  SRR4302533.5794186/94‑1 (MQ=60)

                                                                             CCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTG                >  SRR4302533.3583187/1‑94 (MQ=60)

                                                                              CTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGC               >  SRR4302533.1894780/1‑94 (MQ=60)

                                                                              CTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGC               >  SRR4302533.4796618/1‑94 (MQ=60)

                                                                               TCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCG              >  SRR4302533.966931/1‑94 (MQ=60)

                                                                                CTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGC             <  SRR4302533.4803073/94‑1 (MQ=60)

                                                                                 TACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCA            <  SRR4302533.5154955/94‑1 (MQ=60)

                                                                                  ACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAA           >  SRR4302533.6236741/1‑94 (MQ=60)

                                                                                  ACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAA           >  SRR4302533.2364329/1‑94 (MQ=60)

                                                                                  ACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAA           >  SRR4302533.537900/1‑94 (MQ=60)

                                                                                  ACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAA           >  SRR4302533.3198710/1‑94 (MQ=60)

                                                                                   CTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAC          >  SRR4302533.5089310/1‑94 (MQ=60)

                                                                                   CTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAC          >  SRR4302533.507354/1‑94 (MQ=60)

                                                                                   CTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAC          >  SRR4302533.493524/1‑94 (MQ=60)

                                                                                   CTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAC          >  SRR4302533.4730366/1‑94 (MQ=60)

                                                                                    CCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACC         <  SRR4302533.5177322/94‑1 (MQ=60)

                                                                                      TTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAG       <  SRR4302533.1481492/94‑1 (MQ=60)

                                                                                      TTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAG       >  SRR4302533.4226511/1‑94 (MQ=60)

                                                                                      TTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAG       <  SRR4302533.4347216/94‑1 (MQ=60)

                                                                                      TTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAG       >  SRR4302533.1980400/1‑94 (MQ=60)

                                                                                      TTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAG       <  SRR4302533.1916080/94‑1 (MQ=60)

                                                                                        CGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAA     >  SRR4302533.3143538/1‑94 (MQ=60)

                                                                                        CGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGAGCATTGCGCAATCAGAA     >  SRR4302533.2055563/1‑94 (MQ=60)

                                                                                         GAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAAC    <  SRR4302533.977587/94‑1 (MQ=60)

                                                                                         GAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAAC    >  SRR4302533.3099423/1‑94 (MQ=60)

                                                                                         GAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAAC    >  SRR4302533.3291902/1‑94 (MQ=60)

                                                                                          AGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACT   <  SRR4302533.2331243/94‑1 (MQ=60)

                                                                                          AGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACT   <  SRR4302533.2786452/94‑1 (MQ=60)

                                                                                          AGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACT   >  SRR4302533.3928481/1‑94 (MQ=60)

                                                                                           GCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACTG  <  SRR4302533.2524136/94‑1 (MQ=60)

                                                                                           GCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACTG  <  SRR4302533.5182729/94‑1 (MQ=60)

TCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACTG  >  NC_000913/1871893‑1872077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`