Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,874,785 T→C G363G (GGT→GGC)  yeaN → putative amino acid/amine transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,874,7850TC100.0% 833.4 / NA 257G363G (GGT→GGC) yeaNputative amino acid/amine transport protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (153/104);  total (153/104)

Only 100 of 265 total aligned reads displayed.

GGCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGTAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCG  >  NC_000913/1874695‑1874874
                                                                                          |                                                                                         
ggcggcACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCaa                                                                                         >  2:9018215/1‑93 (MQ=255)
ggcggcACTCTCAGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCaa                                                                                         <  2:7313432/93‑1 (MQ=255)
 gcggcgCTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAAc                                                                                        <  1:6036978/93‑1 (MQ=255)
 gcggcACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAAc                                                                                        >  1:1075650/1‑93 (MQ=255)
 gcggcACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAAc                                                                                        <  1:9826338/93‑1 (MQ=255)
    gcACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTgg                                                                                     >  1:58663/1‑93 (MQ=255)
     cACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGt                                                                                    >  2:2385098/1‑93 (MQ=255)
      cctctCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTc                                                                                   <  2:1826948/92‑1 (MQ=255)
      cctctCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTc                                                                                   <  2:706600/92‑1 (MQ=255)
       ctctCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCt                                                                                  >  2:6454896/1‑93 (MQ=255)
       ctctCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCt                                                                                  <  1:3864387/93‑1 (MQ=255)
       ctctCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCACCCTGGGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCt                                                                                  <  2:320022/93‑1 (MQ=255)
        tctcGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTg                                                                                 >  2:1308241/1‑93 (MQ=255)
          tcGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTa                                                                               >  1:9048779/1‑93 (MQ=255)
           cGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTAc                                                                              <  2:6184727/93‑1 (MQ=255)
              ggATGTCACAGTCCGTGGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCAc                                                                           <  2:5252842/93‑1 (MQ=255)
              ggATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCAc                                                                           >  2:4509875/1‑93 (MQ=255)
               gATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACt                                                                          >  2:8266792/1‑93 (MQ=255)
                aTGGCAGAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACtt                                                                         <  2:8112964/93‑1 (MQ=255)
                 tGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTa                                                                        >  1:9576847/1‑93 (MQ=255)
                 tGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTa                                                                        >  1:7372772/1‑93 (MQ=255)
                   gCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATg                                                                      >  1:9229058/1‑93 (MQ=255)
                    cacaATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATgg                                                                     <  2:3064929/93‑1 (MQ=255)
                     acaATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATggg                                                                    >  2:5243243/1‑93 (MQ=255)
                     acaATCCGTCGGGTATTTGTGGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATggg                                                                    <  1:1442433/93‑1 (MQ=255)
                        aTCCGTCGGGTATTTTTTGGCAGCCGGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGgtgt                                                                 <  1:7665560/93‑1 (MQ=255)
                        aTCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGgtgt                                                                 >  1:4435440/1‑93 (MQ=255)
                         tCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGtt                                                                <  1:6505054/93‑1 (MQ=255)
                         tCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGtt                                                                >  2:6136361/1‑93 (MQ=255)
                            gTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGcc                                                             >  1:6849098/1‑93 (MQ=255)
                             tCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCa                                                            >  2:3602826/1‑93 (MQ=255)
                             gcGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCa                                                            <  2:3912995/92‑1 (MQ=255)
                              cGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCAt                                                           >  2:4913954/1‑93 (MQ=255)
                              cGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCAt                                                           >  2:4019000/1‑93 (MQ=255)
                               gggTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATa                                                          >  1:1298984/1‑93 (MQ=255)
                               gggTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATa                                                          >  1:3900340/1‑93 (MQ=255)
                                ggTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATAc                                                         >  2:2600789/1‑93 (MQ=255)
                                ggTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATAc                                                         <  2:6076117/93‑1 (MQ=255)
                                    tttGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTc                                                     >  1:1213389/1‑93 (MQ=255)
                                     ttgttgGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCa                                                    >  1:9985929/1‑93 (MQ=255)
                                      tgttgGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCac                                                   >  2:5799628/1‑93 (MQ=255)
                                         tgGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCactac                                                <  2:933137/93‑1 (MQ=255)
                                            cAGCCTGTGGTCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGa                                             <  2:1538955/93‑1 (MQ=255)
                                            cAGCCTGTGGGCCGCCTCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGa                                             <  2:3223966/93‑1 (MQ=255)
                                              gCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATg                                           >  1:7660383/1‑93 (MQ=255)
                                                cTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGc                                         >  2:1726884/1‑93 (MQ=255)
                                                cTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGc                                         >  1:9555461/1‑93 (MQ=255)
                                                 tgtgGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATTGCg                                        >  2:272910/1‑93 (MQ=255)
                                                 tgtgGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCg                                        >  1:2055317/1‑93 (MQ=255)
                                                 tgtgGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCg                                        >  1:2481256/1‑93 (MQ=255)
                                                  gtgGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCgt                                       >  1:851927/1‑92 (MQ=255)
                                                   tgGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGAt                                      >  2:1101626/1‑93 (MQ=255)
                                                     ggCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGAttt                                    >  2:6714137/1‑93 (MQ=255)
                                                      gccgccGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGAtttt                                   >  2:9509602/1‑93 (MQ=255)
                                                          ccgcTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGa                               >  1:2224972/1‑93 (MQ=255)
                                                          ccgcTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGa                               <  1:5761141/93‑1 (MQ=255)
                                                          ccgcTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGa                               >  1:5359473/1‑93 (MQ=255)
                                                            gcTGATGGGTAAAATACACGATGCTAACGGCATCTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACt                             <  1:5450605/93‑1 (MQ=255)
                                                             cTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTTCCATACTTTCACTACTGATGGCGATTTTCGGACtt                            <  2:7617523/93‑1 (MQ=255)
                                                             cTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACtt                            >  1:1833871/1‑93 (MQ=255)
                                                             cTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACtt                            >  1:4924189/1‑93 (MQ=255)
                                                             cTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACtt                            <  1:4827464/93‑1 (MQ=255)
                                                             cTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACtt                            >  1:2666705/1‑93 (MQ=255)
                                                              tGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACttt                           <  2:1532831/93‑1 (MQ=255)
                                                              tGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACttt                           <  1:6723117/93‑1 (MQ=255)
                                                              tGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACttt                           >  2:2793517/1‑93 (MQ=255)
                                                               gATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTg                          >  2:6721377/1‑93 (MQ=255)
                                                               gATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTg                          >  2:9869363/1‑93 (MQ=255)
                                                               gATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTg                          >  2:3401537/1‑93 (MQ=255)
                                                               gATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTg                          >  1:2712460/1‑93 (MQ=255)
                                                               gATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTg                          >  1:8171420/1‑93 (MQ=255)
                                                                aTGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTgc                         <  2:237016/93‑1 (MQ=255)
                                                                aTGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTgc                         <  2:697120/93‑1 (MQ=255)
                                                                 tGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTgcg                        >  1:3544086/1‑93 (MQ=255)
                                                                  gggTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTgcgc                       <  1:6215799/93‑1 (MQ=255)
                                                                   ggTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGcc                      >  2:942170/1‑93 (MQ=255)
                                                                   ggTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGcc                      <  1:2933269/93‑1 (MQ=255)
                                                                     tAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCgg                    >  2:7850514/1‑93 (MQ=255)
                                                                       aaaTACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGga                  <  2:9644586/93‑1 (MQ=255)
                                                                       aaaTACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGga                  <  1:6169126/93‑1 (MQ=255)
                                                                       aaaTACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGga                  >  1:5134737/1‑93 (MQ=255)
                                                                        aaTACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGCGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGgag                 >  1:7799020/1‑93 (MQ=255)
                                                                         aTACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGTCTTTGCGCCGGgaga                >  1:3119673/1‑93 (MQ=255)
                                                                         aTACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGgaga                <  1:1046517/93‑1 (MQ=255)
                                                                          tACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGgagag               >  1:1916625/1‑93 (MQ=255)
                                                                          tACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGgagag               <  2:2102712/93‑1 (MQ=255)
                                                                           acacGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCAGgagaga              >  2:5922805/1‑93 (MQ=255)
                                                                             acGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACa            >  1:7035745/1‑93 (MQ=255)
                                                                               gATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACaaa          <  1:6478658/93‑1 (MQ=255)
                                                                               gATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACaaa          <  1:3259295/93‑1 (MQ=255)
                                                                                aTGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAg         <  2:8766153/93‑1 (MQ=255)
                                                                                aTGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAg         >  1:4543090/1‑93 (MQ=255)
                                                                                 tGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGa        >  1:7855128/1‑93 (MQ=255)
                                                                                   cTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGaaa      >  1:4041973/1‑93 (MQ=255)
                                                                                     aaCGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAAtt    <  2:9161059/93‑1 (MQ=255)
                                                                                     aaCGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAAtt    >  2:9640713/1‑93 (MQ=255)
                                                                                     aaCGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAAtt    <  1:4325295/93‑1 (MQ=255)
                                                                                      aCGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCGGGGAGAGCCAAAGAAATTc   >  1:3272032/1‑93 (MQ=255)
                                                                                      aCGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTc   <  1:4674443/93‑1 (MQ=255)
                                                                                      aCGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTc   >  2:4741655/1‑93 (MQ=255)
                                                                                          |                                                                                         
GGCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGTAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCG  >  NC_000913/1874695‑1874874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGTAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCGCTAA  >  NC_000913/1874695‑1874878
                                                                                          |                                                                                             
GGCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAAC                                                                                            >  SRR4302540.1086643/1‑94 (MQ=60)
GGCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAAC                                                                                            >  SRR4302540.9274287/1‑94 (MQ=60)
 GCGGCGCTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACT                                                                                           <  SRR4302540.6103997/94‑1 (MQ=60)
 GCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACT                                                                                           <  SRR4302540.5289367/94‑1 (MQ=60)
 GCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACT                                                                                           <  SRR4302540.9941289/94‑1 (MQ=60)
   GGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGG                                                                                         >  SRR4302540.59255/1‑94 (MQ=60)
      ACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCT                                                                                      <  SRR4302540.5856533/94‑1 (MQ=60)
      ACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCT                                                                                      >  SRR4302540.7819798/1‑94 (MQ=60)
       CTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTG                                                                                     <  SRR4302540.3906391/94‑1 (MQ=60)
       CTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTG                                                                                     >  SRR4302540.6856268/1‑94 (MQ=60)
       CTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTG                                                                                     <  SRR4302540.7635493/94‑1 (MQ=60)
        TCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGT                                                                                    <  SRR4302540.7275182/94‑1 (MQ=60)
         CTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTA                                                                                   >  SRR4302540.9157407/1‑94 (MQ=60)
          TCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTAC                                                                                  >  SRR4302540.5800705/1‑94 (MQ=60)
          TCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTAC                                                                                  <  SRR4302540.4715244/94‑1 (MQ=60)
                ATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTA                                                                            >  SRR4302540.7454952/1‑94 (MQ=60)
                ATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTA                                                                            >  SRR4302540.9689951/1‑94 (MQ=60)
                  GGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATG                                                                          >  SRR4302540.9339693/1‑94 (MQ=60)
                   GCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGG                                                                         <  SRR4302540.4012509/94‑1 (MQ=60)
                     caaagCCGTCGTGTATTTGTTGTCAGCCTTGGGGCCGCGGCTGATGAGTAAGATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGT                                                                       <  SRR4302540.1458096/89‑1 (MQ=55)
                     ACAATCCGTCGGGTATTTGTGGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGT                                                                       <  SRR4302540.1458097/94‑1 (MQ=60)
                      CAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTG                                                                      >  SRR4302540.2574923/1‑94 (MQ=60)
                      CAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTG                                                                      <  SRR4302540.2697640/94‑1 (MQ=60)
                       AATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGT                                                                     >  SRR4302540.4483498/1‑94 (MQ=60)
                       AATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGT                                                                     >  SRR4302540.5294531/1‑94 (MQ=60)
                        ATCCGTCGGGTATTTTTTGGCAGCCGGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTT                                                                    <  SRR4302540.7751917/94‑1 (MQ=60)
                        ATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTT                                                                    <  SRR4302540.7751916/94‑1 (MQ=60)
                         accgtgtGGTATTTGTTGGCAGCCTGTGGTCCCCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTG                                                                   <  SRR4302540.1365599/87‑1 (MQ=60)
                         TCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTG                                                                   <  SRR4302540.4581923/94‑1 (MQ=60)
                         TCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTG                                                                   <  SRR4302540.1365600/94‑1 (MQ=60)
                         TCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTG                                                                   <  SRR4302540.6577355/94‑1 (MQ=60)
                         TCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTG                                                                   >  SRR4302540.2896106/1‑94 (MQ=60)
                           CGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCC                                                                 >  SRR4302540.6924978/1‑94 (MQ=60)
                           CGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCC                                                                 >  SRR4302540.7199368/1‑94 (MQ=60)
                             TCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCAT                                                               >  SRR4302540.2307625/1‑94 (MQ=60)
                             TCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCAT                                                               >  SRR4302540.3315655/1‑94 (MQ=60)
                             TCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCAT                                                               <  SRR4302540.1698616/94‑1 (MQ=60)
                              CGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATA                                                              <  SRR4302540.546205/94‑1 (MQ=60)
                              CGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATA                                                              >  SRR4302540.4909800/1‑94 (MQ=60)
                              CGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATA                                                              >  SRR4302540.2145096/1‑94 (MQ=60)
                              CGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATA                                                              >  SRR4302540.6634675/1‑94 (MQ=60)
                              CGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATA                                                              >  SRR4302540.1312453/1‑94 (MQ=60)
                              CGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATA                                                              >  SRR4302540.3942660/1‑94 (MQ=60)
                               GGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATAC                                                             >  SRR4302540.5080116/1‑94 (MQ=60)
                               GGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATAC                                                             <  SRR4302540.2717568/94‑1 (MQ=60)
                               GGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATAC                                                             >  SRR4302540.6895071/1‑94 (MQ=60)
                                GGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACT                                                            >  SRR4302540.4034866/1‑94 (MQ=60)
                                 GTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTT                                                           >  SRR4302540.7510062/1‑94 (MQ=60)
                                   ATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTC                                                         >  SRR4302540.1225827/1‑94 (MQ=60)
                                    TTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCA                                                        >  SRR4302540.10102346/1‑94 (MQ=60)
                                      TGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACT                                                      >  SRR4302540.4948988/1‑94 (MQ=60)
                                        TTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCAATATTTTCACTct                                                    >  SRR4302540.3181374/1‑92 (MQ=60)
                                         tggcgtctTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACT                                                   <  SRR4302540.4501761/86‑1 (MQ=60)
                                           GCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGA                                                 >  SRR4302540.5832860/1‑94 (MQ=60)
                                            CAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGAT                                                <  SRR4302540.1334675/94‑1 (MQ=60)
                                            CAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGAT                                                <  SRR4302540.9625321/94‑1 (MQ=60)
                                             AGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATG                                               <  SRR4302540.9949826/94‑1 (MQ=60)
                                             AGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATG                                               >  SRR4302540.7746647/1‑94 (MQ=60)
                                               CCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGC                                             >  SRR4302540.9668462/1‑94 (MQ=60)
                                               CCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGC                                             >  SRR4302540.797939/1‑94 (MQ=60)
                                                CTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCG                                            >  SRR4302540.2077442/1‑94 (MQ=60)
                                                CTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCG                                            >  SRR4302540.2507985/1‑94 (MQ=60)
                                                CTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCG                                            >  SRR4302540.6047132/1‑94 (MQ=60)
                                                 TGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGT                                           >  SRR4302540.860970/1‑94 (MQ=60)
                                                 TGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGA                                           >  SRR4302540.7863484/1‑94 (MQ=60)
                                                  GTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGAT                                          <  SRR4302540.1997637/94‑1 (MQ=60)
                                                  GTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATAGGTGTTGCCATACTTTCACTACTGATGGCGAT                                          <  SRR4302540.9296992/94‑1 (MQ=60)
                                                   TGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATT                                         >  SRR4302540.9820557/1‑94 (MQ=60)
                                                    gggccggcgcgaagGGGTAAAATACACGATTCTAACGGCAACTGTTCTGGGCCACTTATGGGTTTTGCCATACTTTCACTACTGATGGCGATTT                                        <  SRR4302540.3198832/80‑1 (MQ=60)
                                                    GGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTT                                        <  SRR4302540.9351304/94‑1 (MQ=60)
                                                    GGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTT                                        <  SRR4302540.792194/94‑1 (MQ=60)
                                                     GGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTT                                       <  SRR4302540.3913893/94‑1 (MQ=60)
                                                     GCCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTT                                       <  SRR4302540.9826573/94‑1 (MQ=60)
                                                        CGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGG                                    >  SRR4302540.1132802/1‑94 (MQ=60)
                                                         GCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGA                                   >  SRR4302540.1088985/1‑94 (MQ=60)
                                                         GCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGA                                   >  SRR4302540.2248953/1‑94 (MQ=60)
                                                         GCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGA                                   >  SRR4302540.5418337/1‑94 (MQ=60)
                                                         GCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGA                                   >  SRR4302540.5418338/1‑94 (MQ=60)
                                                          CCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGAC                                  >  SRR4302540.8079232/1‑94 (MQ=60)
                                                          CCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGAC                                  <  SRR4302540.5824749/94‑1 (MQ=60)
                                                          CCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGAC                                  <  SRR4302540.3805216/94‑1 (MQ=60)
                                                           CGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCCTACTTTAACTACTGATGGCGATTTTCGGACT                                 >  SRR4302540.3493968/1‑94 (MQ=60)
                                                            GCTGATGGGTAAAATACACGATGCTAACGGCATCTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTT                                <  SRR4302540.5510587/94‑1 (MQ=60)
                                                            GCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTT                                >  SRR4302540.4977255/1‑94 (MQ=60)
                                                            GCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTT                                >  SRR4302540.2695609/1‑94 (MQ=60)
                                                            GCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTT                                >  SRR4302540.9114155/1‑94 (MQ=60)
                                                            GCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTT                                >  SRR4302540.1853939/1‑94 (MQ=60)
                                                             CTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTT                               >  SRR4302540.1310348/1‑94 (MQ=60)
                                                             CTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTT                               <  SRR4302540.2228541/94‑1 (MQ=60)
                                                             CTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTT                               <  SRR4302540.4879160/94‑1 (MQ=60)
                                                              TGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTG                              >  SRR4302540.2741711/1‑94 (MQ=60)
                                                              TGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTG                              >  SRR4302540.8266327/1‑94 (MQ=60)
                                                              TGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTG                              <  SRR4302540.6797322/94‑1 (MQ=60)
                                                               GATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGC                             >  SRR4302540.1617450/1‑94 (MQ=60)
                                                                ATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCG                            >  SRR4302540.6145097/1‑94 (MQ=60)
                                                                ATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCG                            >  SRR4302540.3582798/1‑94 (MQ=60)
                                                                 TGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGCCTTTGCGC                           >  SRR4302540.3668475/1‑94 (MQ=60)
                                                                  GGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCGCTACTGATGGCGATTTTCGGACTTTGCGCC                          <  SRR4302540.3095257/94‑1 (MQ=60)
                                                                  GGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCC                          <  SRR4302540.6284958/94‑1 (MQ=60)
                                                                   GGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCG                         <  SRR4302540.2965457/94‑1 (MQ=60)
                                                                    GTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGG                        >  SRR4302540.6745938/1‑94 (MQ=60)
                                                                    GTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGG                        >  SRR4302540.635460/1‑94 (MQ=60)
                                                                      AAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGCTTTTCGGACTTTCCGCCGGGA                      >  SRR4302540.7104089/1‑94 (MQ=60)
                                                                      AAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGA                      >  SRR4302540.5190347/1‑94 (MQ=60)
                                                                       AAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAG                     <  SRR4302540.6237863/94‑1 (MQ=60)
                                                                       AAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGCGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAG                     >  SRR4302540.7890184/1‑94 (MQ=60)
                                                                        AATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGTCTTTGCGCCGGGAGA                    >  SRR4302540.3153769/1‑94 (MQ=60)
                                                                        AATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGA                    >  SRR4302540.3016489/1‑94 (MQ=60)
                                                                         ATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAG                   <  SRR4302540.1057152/94‑1 (MQ=60)
                                                                         ATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAG                   >  SRR4302540.1937541/1‑94 (MQ=60)
                                                                          TACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGA                  <  SRR4302540.4810296/94‑1 (MQ=60)
                                                                           ACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGAC                 >  SRR4302540.8293816/1‑94 (MQ=60)
                                                                           ACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGAC                 >  SRR4302540.1930609/1‑94 (MQ=60)
                                                                            CACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACA                >  SRR4302540.7113946/1‑94 (MQ=60)
                                                                             ACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAA               <  SRR4302540.2027520/94‑1 (MQ=60)
                                                                             ACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAA               >  SRR4302540.6469951/1‑94 (MQ=60)
                                                                              CGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAA              >  SRR4302540.444443/1‑94 (MQ=60)
                                                                              CGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAA              >  SRR4302540.2639382/1‑94 (MQ=60)
                                                                              CGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAA              <  SRR4302540.626135/94‑1 (MQ=60)
                                                                               GATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAG             <  SRR4302540.6550732/94‑1 (MQ=60)
                                                                               GATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAG             <  SRR4302540.6550985/94‑1 (MQ=60)
                                                                               GATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAG             <  SRR4302540.3294841/94‑1 (MQ=60)
                                                                               GATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAG             >  SRR4302540.4592253/1‑94 (MQ=60)
                                                                               GATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAG             <  SRR4302540.4561681/94‑1 (MQ=60)
                                                                                ATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGA            >  SRR4302540.7946912/1‑94 (MQ=60)
                                                                                ATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGA            >  SRR4302540.4778046/1‑94 (MQ=60)
                                                                                 TGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAA           >  SRR4302540.9980613/1‑94 (MQ=60)
                                                                                  GCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAA          >  SRR4302540.4085544/1‑94 (MQ=60)
                                                                                  GCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAA          >  SRR4302540.4085545/1‑94 (MQ=60)
                                                                                  GCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAA          >  SRR4302540.8375609/1‑94 (MQ=60)
                                                                                   CTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAAT         >  SRR4302540.9680882/1‑94 (MQ=60)
                                                                                   CTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAAT         <  SRR4302540.6031079/94‑1 (MQ=60)
                                                                                     AACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCGGGGAGAGCCAAAGAAATTC       >  SRR4302540.3307748/1‑94 (MQ=60)
                                                                                     AACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTC       <  SRR4302540.4372387/94‑1 (MQ=60)
                                                                                     AACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTC       <  SRR4302540.4096528/94‑1 (MQ=60)
                                                                                     AACGGCAACTGGTCTGTACCACTTATGGGGGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACCAAGAAATTC       >  SRR4302540.3307747/1‑94 (MQ=60)
                                                                                      ACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCG      <  SRR4302540.4724465/94‑1 (MQ=60)
                                                                                      ACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCG      <  SRR4302540.6281217/94‑1 (MQ=60)
                                                                                      ACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCG      >  SRR4302540.1067577/1‑94 (MQ=60)
                                                                                       CGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCGC     >  SRR4302540.4787564/1‑94 (MQ=60)
                                                                                       CGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCGC     >  SRR4302540.4787565/1‑94 (MQ=60)
                                                                                        GGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCGCT    <  SRR4302540.9082207/94‑1 (MQ=60)
                                                                                        GGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCGCT    <  SRR4302540.7219979/94‑1 (MQ=60)
                                                                                          CAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCGCTAA  <  SRR4302540.7244661/94‑1 (MQ=60)
                                                                                          CAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCGCTAA  >  SRR4302540.8257173/1‑94 (MQ=60)
                                                                                          |                                                                                             
GGCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGTAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCGCTAA  >  NC_000913/1874695‑1874878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑