Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,874,785 T→C G363G (GGT→GGC)  yeaN → putative amino acid/amine transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,874,7850TC100.0% 721.8 / NA 221G363G (GGT→GGC) yeaNputative amino acid/amine transport protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (99/122);  total (99/122)

Only 100 of 226 total aligned reads displayed.

GGCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGTAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCG  >  NC_000913/1874695‑1874874
                                                                                          |                                                                                         
ggcggcACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCaa                                                                                         >  1:21612/1‑93 (MQ=255)
 gcggcACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAAc                                                                                        <  1:3530895/93‑1 (MQ=255)
   ggcACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAATGGCAACTg                                                                                      <  2:6126211/93‑1 (MQ=255)
   ggcACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTg                                                                                      >  2:1272788/1‑93 (MQ=255)
    gcgctctCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTgg                                                                                     <  1:468618/90‑1 (MQ=255)
    gcACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTgg                                                                                     <  1:967219/93‑1 (MQ=255)
     cgctctCGGGGATGGCACAATCCGTGGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGt                                                                                    <  1:1546289/91‑1 (MQ=255)
     ccctctCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGt                                                                                    <  2:3309534/91‑1 (MQ=255)
      cctctCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTc                                                                                   <  1:2614098/92‑1 (MQ=255)
        tctcGGGGATGGCACAATCCGTCGGGTATTTGTTGGCATCCTGTGGGCCGCCGCTGATGGGTAACATACACGATGCTAACAGCAACTGGCCtt                                                                                 >  1:1372935/1‑92 (MQ=255)
         ctcGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGt                                                                                >  2:4669357/1‑93 (MQ=255)
          tcGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTa                                                                               >  2:4145181/1‑93 (MQ=255)
             gggATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCa                                                                            >  1:1112650/1‑93 (MQ=255)
             gggATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCa                                                                            >  1:860901/1‑93 (MQ=255)
             gggATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCa                                                                            >  1:5236251/1‑93 (MQ=255)
              ggATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCAc                                                                           <  2:80022/93‑1 (MQ=255)
              ggATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCAc                                                                           <  2:1603445/93‑1 (MQ=255)
               gATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACt                                                                          >  1:2491185/1‑93 (MQ=255)
                 tGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTa                                                                        <  1:1727828/93‑1 (MQ=255)
                   gCACACTCCGTCGGGTATTTGTTGGCAGCCGGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATg                                                                      <  2:3033269/93‑1 (MQ=255)
                    cacaATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATgg                                                                     <  2:3763658/93‑1 (MQ=255)
                    cacaATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATgg                                                                     <  2:2044271/93‑1 (MQ=255)
                    cacaATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATgg                                                                     <  1:689319/93‑1 (MQ=255)
                       aaTCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGgtg                                                                  >  1:1683115/1‑93 (MQ=255)
                       aaTCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGgtg                                                                  >  2:3174389/1‑93 (MQ=255)
                       aaTCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGgtg                                                                  <  1:5487736/93‑1 (MQ=255)
                        aTCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGgtgt                                                                 <  2:5086035/93‑1 (MQ=255)
                        aTCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGgtgt                                                                 <  1:4970628/93‑1 (MQ=255)
                        aTCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGgtgt                                                                 <  2:3959147/93‑1 (MQ=255)
                         tCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGtt                                                                <  2:5271510/93‑1 (MQ=255)
                           cGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGc                                                              >  1:3248822/1‑93 (MQ=255)
                            gTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGcc                                                             >  2:2777909/1‑93 (MQ=255)
                            gTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGGTGcc                                                             >  2:571749/1‑93 (MQ=255)
                             tCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCGACTGGTCTGTACCACTTATGGGTGTTGCCa                                                            <  2:3178185/93‑1 (MQ=255)
                             tCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCa                                                            <  2:6194915/93‑1 (MQ=255)
                              cGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCAt                                                           >  2:723319/1‑93 (MQ=255)
                                  tATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACtt                                                       <  2:5311247/93‑1 (MQ=255)
                                   tttttttGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACttt                                                      <  2:778293/92‑1 (MQ=255)
                                   aTTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACttt                                                      >  1:2147175/1‑93 (MQ=255)
                                    tttGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTc                                                     <  1:3126336/93‑1 (MQ=255)
                                    tttGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTc                                                     <  2:560476/93‑1 (MQ=255)
                                      tgttgGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCac                                                   <  1:2433029/93‑1 (MQ=255)
                                      tgttgGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCac                                                   <  2:4257518/93‑1 (MQ=255)
                                      tgttgGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCac                                                   <  2:4473014/93‑1 (MQ=255)
                                      tgtggGCAGCCTGTGGGCCGCCTCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCac                                                   <  1:1032565/93‑1 (MQ=255)
                                        ttgGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCactg                                                 <  1:5783530/93‑2 (MQ=255)
                                        ttgGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCacta                                                 <  1:5340685/93‑1 (MQ=255)
                                         tgGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCactac                                                <  2:6704/93‑1 (MQ=255)
                                         tgGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCactac                                                <  2:2153748/93‑1 (MQ=255)
                                          ggCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCactact                                               <  1:4022107/93‑1 (MQ=255)
                                            cAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGa                                             <  2:5482868/93‑1 (MQ=255)
                                            cAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGa                                             <  2:3721570/93‑1 (MQ=255)
                                             aGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGAt                                            <  1:3745044/93‑1 (MQ=255)
                                              gCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATg                                           >  1:3796428/1‑93 (MQ=255)
                                              gCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATg                                           >  1:4511927/1‑93 (MQ=255)
                                               ccTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATgg                                          <  2:362300/93‑1 (MQ=255)
                                                cTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGc                                         >  1:61222/1‑93 (MQ=255)
                                                cTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGc                                         >  2:5383078/1‑93 (MQ=255)
                                                cTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGc                                         >  1:1929162/1‑93 (MQ=255)
                                                cTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGc                                         >  1:4113233/1‑93 (MQ=255)
                                                 tgtgGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCg                                        >  2:1171730/1‑93 (MQ=255)
                                                 tgtgGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCg                                        >  2:2893925/1‑93 (MQ=255)
                                                        cgccgcTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCg                                 <  1:3924273/93‑1 (MQ=255)
                                                         gccgcTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCgg                                >  2:2182280/1‑93 (MQ=255)
                                                         gccgcTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCgg                                >  2:58290/1‑93 (MQ=255)
                                                           cgcTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGAc                              <  2:5863882/93‑1 (MQ=255)
                                                           cgcTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGAc                              >  1:5369063/1‑93 (MQ=255)
                                                            gcTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACt                             >  1:3087874/1‑93 (MQ=255)
                                                            gcTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACt                             >  2:3866531/1‑93 (MQ=255)
                                                            gcTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACt                             >  1:1307713/1‑93 (MQ=255)
                                                            gcTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACt                             <  1:3497406/93‑1 (MQ=255)
                                                            gcTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGGGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACt                             >  2:3543739/1‑93 (MQ=255)
                                                             cTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACtt                            >  2:3662789/1‑93 (MQ=255)
                                                             cTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACtt                            >  2:2570599/1‑93 (MQ=255)
                                                             cTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACtt                            >  1:4433204/1‑93 (MQ=255)
                                                             cTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACtt                            <  1:4608522/93‑1 (MQ=255)
                                                             cTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACtt                            >  2:5385989/1‑93 (MQ=255)
                                                               gATGGGTAAAATGCACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTg                          >  1:3404972/1‑93 (MQ=255)
                                                               gATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTg                          <  1:4243158/93‑1 (MQ=255)
                                                               gATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTg                          >  1:613981/1‑93 (MQ=255)
                                                                aTGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTgc                         >  1:1664521/1‑93 (MQ=255)
                                                                  gggTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTgcgc                       <  1:2591739/93‑1 (MQ=255)
                                                                  gggTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTgcgc                       <  1:5177031/93‑1 (MQ=255)
                                                                  gggTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTgcgc                       >  1:5461197/1‑93 (MQ=255)
                                                                     tAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCgg                    <  2:853681/93‑1 (MQ=255)
                                                                     tAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCgg                    <  1:3358138/93‑1 (MQ=255)
                                                                       aaaTACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGga                  <  2:1452531/93‑1 (MQ=255)
                                                                         aTACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGgaga                <  1:6036461/93‑1 (MQ=255)
                                                                         aTACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGgaga                <  2:2609717/93‑1 (MQ=255)
                                                                          tACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGgagag               <  2:2327895/93‑1 (MQ=255)
                                                                               gATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACaaa          >  1:5096408/1‑93 (MQ=255)
                                                                                aTGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAg         >  1:1835201/1‑93 (MQ=255)
                                                                                aTGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAg         >  2:3475892/1‑93 (MQ=255)
                                                                                 tGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGa        >  1:3158942/1‑93 (MQ=255)
                                                                                   cTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGaaa      <  2:3110654/93‑1 (MQ=255)
                                                                                    tAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAAt     <  1:5910241/93‑1 (MQ=255)
                                                                                    tAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAAt     >  2:4641241/1‑93 (MQ=255)
                                                                                     aaCGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAAtt    >  1:5937657/1‑93 (MQ=255)
                                                                                     aaCGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAAtt    <  1:4166067/93‑1 (MQ=255)
                                                                                      aCGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTc   <  2:102286/93‑1 (MQ=255)
                                                                                          |                                                                                         
GGCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGTAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCG  >  NC_000913/1874695‑1874874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGCGGCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGTAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCGCT  >  NC_000913/1874692‑1874876
                                                                                             |                                                                                           
GGCGGCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGC                                                                                             >  SRR4302533.4403460/1‑94 (MQ=60)
  CGGCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAA                                                                                           >  SRR4302533.21755/1‑94 (MQ=60)
    GCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACT                                                                                         <  SRR4302533.3552655/94‑1 (MQ=60)
      GGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGG                                                                                       <  SRR4302533.5515097/94‑1 (MQ=60)
       GCGCTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGT                                                                                      <  SRR4302533.471416/94‑1 (MQ=60)
       GCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGT                                                                                      <  SRR4302533.972892/94‑1 (MQ=60)
        CGCTCTCGGGGATGGCACAATCCGTGGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTC                                                                                     <  SRR4302533.1555608/94‑1 (MQ=60)
        CACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTC                                                                                     >  SRR4302533.2167013/1‑94 (MQ=60)
        CACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTC                                                                                     >  SRR4302533.184049/1‑94 (MQ=60)
         CCTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCT                                                                                    <  SRR4302533.4094932/94‑1 (MQ=60)
         CCTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCT                                                                                    <  SRR4302533.2630144/94‑1 (MQ=60)
         ACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCT                                                                                    <  SRR4302533.1479331/94‑1 (MQ=60)
            tcaGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTA                                                                                 <  SRR4302533.5217816/91‑1 (MQ=60)
            CTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTA                                                                                 <  SRR4302533.3164937/94‑1 (MQ=60)
              CGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACC                                                                               >  SRR4302533.3420054/1‑94 (MQ=60)
               GGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCA                                                                              >  SRR4302533.5267734/1‑94 (MQ=60)
               GGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCA                                                                              >  SRR4302533.865945/1‑94 (MQ=60)
               GGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCA                                                                              >  SRR4302533.1119250/1‑94 (MQ=60)
                 GGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACT                                                                            >  SRR4302533.2506529/1‑94 (MQ=60)
                  GATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTT                                                                           <  SRR4302533.4618080/94‑1 (MQ=60)
                   ATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTA                                                                          <  SRR4302533.4014864/94‑1 (MQ=60)
                    TGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTAT                                                                         <  SRR4302533.1738311/94‑1 (MQ=60)
                      GCCCAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGG                                                                       <  SRR4302533.3262444/94‑1 (MQ=60)
                       CACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGG                                                                      <  SRR4302533.693395/94‑1 (MQ=60)
                        ACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGT                                                                     >  SRR4302533.1087778/1‑94 (MQ=60)
                         CAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTG                                                                    >  SRR4302533.1693311/1‑94 (MQ=60)
                          AATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGT                                                                   <  SRR4302533.5520817/94‑1 (MQ=60)
                           ATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTT                                                                  <  SRR4302533.5307904/94‑1 (MQ=60)
                           ATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTT                                                                  <  SRR4302533.5000765/94‑1 (MQ=60)
                           ATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTT                                                                  <  SRR4302533.4192129/94‑1 (MQ=60)
                           ATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTCTACCACTTATGGGTGTT                                                                  <  SRR4302533.429951/94‑1 (MQ=60)
                             CCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGC                                                                >  SRR4302533.821349/1‑94 (MQ=60)
                             CCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGC                                                                <  SRR4302533.1343640/94‑1 (MQ=60)
                             CCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGC                                                                >  SRR4302533.3268854/1‑94 (MQ=60)
                              CGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCC                                                               <  SRR4302533.4789774/94‑1 (MQ=60)
                              CGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCC                                                               >  SRR4302533.5120428/1‑94 (MQ=60)
                                 CGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATA                                                            >  SRR4302533.6041803/1‑94 (MQ=60)
                                   GGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACT                                                          >  SRR4302533.1617869/1‑94 (MQ=60)
                                    GTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTT                                                         >  SRR4302533.2407367/1‑94 (MQ=60)
                                     TATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTT                                                        >  SRR4302533.2160399/1‑94 (MQ=60)
                                       TTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCA                                                      <  SRR4302533.3145555/94‑1 (MQ=60)
                                       TTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCA                                                      <  SRR4302533.5448364/94‑1 (MQ=60)
                                         TGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACT                                                    <  SRR4302533.2346647/94‑1 (MQ=60)
                                         TGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACT                                                    <  SRR4302533.2448062/94‑1 (MQ=60)
                                         TGTGGGCAGCCTGTGGGCCGCCTCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACT                                                    <  SRR4302533.1038637/94‑1 (MQ=60)
                                           TTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTGC                                                  <  SRR4302533.5818459/94‑1 (MQ=60)
                                           TTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTAC                                                  <  SRR4302533.5372712/94‑1 (MQ=60)
                                           TTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTAC                                                  >  SRR4302533.4186030/1‑94 (MQ=60)
                                             GGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTG                                                <  SRR4302533.4046597/94‑1 (MQ=60)
                                             GGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTG                                                <  SRR4302533.1725305/94‑1 (MQ=60)
                                              GCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGC                                               >  SRR4302533.6086750/1‑94 (MQ=60)
                                               CAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGAT                                              <  SRR4302533.3483938/94‑1 (MQ=60)
                                                AGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATG                                             >  SRR4302533.3523549/1‑94 (MQ=60)
                                                AGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATG                                             <  SRR4302533.3768012/94‑1 (MQ=60)
                                                AGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATG                                             >  SRR4302533.4539248/1‑94 (MQ=60)
                                                AGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATG                                             >  SRR4302533.3819666/1‑94 (MQ=60)
                                                AGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATG                                             <  SRR4302533.6165155/94‑1 (MQ=60)
                                                AGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATG                                             >  SRR4302533.731701/1‑94 (MQ=60)
                                                 GCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGG                                            <  SRR4302533.5194820/94‑1 (MQ=60)
                                                 GCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGG                                            <  SRR4302533.6078118/94‑1 (MQ=60)
                                                  CGTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGC                                           <  SRR4302533.2699867/94‑1 (MQ=60)
                                                  CCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGC                                           >  SRR4302533.449705/1‑94 (MQ=60)
                                                  CCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGC                                           >  SRR4302533.61624/1‑94 (MQ=60)
                                                  CCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGC                                           >  SRR4302533.1940933/1‑94 (MQ=60)
                                                  CCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGC                                           >  SRR4302533.4138230/1‑94 (MQ=60)
                                                   CTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCG                                          >  SRR4302533.1276955/1‑94 (MQ=60)
                                                   CTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCG                                          <  SRR4302533.3587647/94‑1 (MQ=60)
                                                    TGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGA                                         >  SRR4302533.5840773/1‑94 (MQ=60)
                                                    TGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGA                                         >  SRR4302533.4706748/1‑94 (MQ=60)
                                                     GTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGAT                                        <  SRR4302533.5960296/94‑1 (MQ=60)
                                                      TGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATT                                       >  SRR4302533.4367611/1‑94 (MQ=60)
                                                         CCCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTC                                    <  SRR4302533.205158/94‑1 (MQ=60)
                                                          CCGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCG                                   >  SRR4302533.3361552/1‑94 (MQ=60)
                                                           CGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGG                                  <  SRR4302533.3948235/94‑1 (MQ=60)
                                                           CGCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGG                                  <  SRR4302533.5679879/94‑1 (MQ=60)
                                                            GCCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGC                                 >  SRR4302533.997217/1‑94 (MQ=60)
                                                             CCGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGAC                                >  SRR4302533.5401315/1‑94 (MQ=60)
                                                              CGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACT                               >  SRR4302533.3106857/1‑94 (MQ=60)
                                                              CGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACT                               >  SRR4302533.1315565/1‑94 (MQ=60)
                                                              CGCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACT                               <  SRR4302533.6187831/94‑1 (MQ=60)
                                                               GCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTT                              >  SRR4302533.4460007/1‑94 (MQ=60)
                                                               GCTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTT                              <  SRR4302533.3518972/94‑1 (MQ=60)
                                                                CTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTT                             <  SRR4302533.4636432/94‑1 (MQ=60)
                                                                CTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTT                             <  SRR4302533.174527/94‑1 (MQ=60)
                                                                CTGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTT                             >  SRR4302533.1394844/1‑94 (MQ=60)
                                                                 TGATGGGTAAAATGCACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTG                            >  SRR4302533.3426003/1‑94 (MQ=60)
                                                                 TGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTG                            >  SRR4302533.2540445/1‑94 (MQ=60)
                                                                 TGATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTG                            >  SRR4302533.617589/1‑94 (MQ=60)
                                                                  GATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGC                           >  SRR4302533.5351101/1‑94 (MQ=60)
                                                                  GATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGC                           >  SRR4302533.2614991/1‑94 (MQ=60)
                                                                  GATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGC                           <  SRR4302533.3579348/94‑1 (MQ=60)
                                                                  GATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGC                           >  SRR4302533.1674581/1‑94 (MQ=60)
                                                                  GATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGC                           <  SRR4302533.4268780/94‑1 (MQ=60)
                                                                   ATGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCG                          >  SRR4302533.4029906/1‑94 (MQ=60)
                                                                    TGGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGC                         >  SRR4302533.5494099/1‑94 (MQ=60)
                                                                     GGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCC                        <  SRR4302533.4947400/94‑1 (MQ=60)
                                                                     GGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCC                        <  SRR4302533.2607664/94‑1 (MQ=60)
                                                                     GGGTAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCC                        <  SRR4302533.5208299/94‑1 (MQ=60)
                                                                        TAAAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGG                     <  SRR4302533.3378889/94‑1 (MQ=60)
                                                                          AAATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAG                   <  SRR4302533.1675954/94‑1 (MQ=60)
                                                                            ATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAG                 <  SRR4302533.1897224/94‑1 (MQ=60)
                                                                            ATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAG                 <  SRR4302533.537833/94‑1 (MQ=60)
                                                                            ATACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAG                 <  SRR4302533.6073042/94‑1 (MQ=60)
                                                                             TACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGA                >  SRR4302533.2808259/1‑94 (MQ=60)
                                                                              ACACGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGAC               >  SRR4302533.3126185/1‑94 (MQ=60)
                                                                                 CGATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAA            >  SRR4302533.5127201/1‑94 (MQ=60)
                                                                                  GATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAG           >  SRR4302533.1846398/1‑94 (MQ=60)
                                                                                   ATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGA          >  SRR4302533.3178382/1‑94 (MQ=60)
                                                                                   ATGCTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGA          >  SRR4302533.3835233/1‑94 (MQ=60)
                                                                                      CTAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAAT       <  SRR4302533.2479696/94‑1 (MQ=60)
                                                                                       TAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATT      >  SRR4302533.5973556/1‑94 (MQ=60)
                                                                                       TAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATT      <  SRR4302533.3297397/94‑1 (MQ=60)
                                                                                       TAACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATT      <  SRR4302533.5945947/94‑1 (MQ=60)
                                                                                        AACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTC     <  SRR4302533.3797927/94‑1 (MQ=60)
                                                                                        AACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTC     <  SRR4302533.4191311/94‑1 (MQ=60)
                                                                                        AACGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTC     <  SRR4302533.882957/94‑1 (MQ=60)
                                                                                          CGGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCGC   <  SRR4302533.5551987/94‑1 (MQ=60)
                                                                                           GGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCGCT  >  SRR4302533.3999998/1‑94 (MQ=60)
                                                                                           GGCAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCGCT  <  SRR4302533.5764404/94‑1 (MQ=60)
                                                                                             |                                                                                           
GGCGGCGGCACTCTCGGGGATGGCACAATCCGTCGGGTATTTGTTGGCAGCCTGTGGGCCGCCGCTGATGGGTAAAATACACGATGCTAACGGTAACTGGTCTGTACCACTTATGGGTGTTGCCATACTTTCACTACTGATGGCGATTTTCGGACTTTGCGCCGGGAGAGACAAAGAAATTCGCT  >  NC_000913/1874692‑1874876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑