Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,920,485	T→C	E170G (GAA→GGA)	b1838 ←	protein phosphatase 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,920,485	0	T	C	100.0%	769.5 / NA	238	E170G (GAA→GGA)	b1838	protein phosphatase 1
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (115/123); total (115/123)

Only 100 of 238 total aligned reads displayed.

TGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGC  >  NC_000913/1920395‑1920573

tGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCa                                                                                        >  1:923443/1‑93 (MQ=255)

     gTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTaa                                                                                   <  1:2881948/93‑1 (MQ=255)

       tGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATc                                                                                 <  1:6168988/93‑1 (MQ=255)

       tGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATc                                                                                 <  2:2163617/93‑1 (MQ=255)

          cAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATcgcg                                                                              >  1:3618791/1‑93 (MQ=255)

           aaTATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGa                                                                             <  1:2949490/93‑1 (MQ=255)

            atatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAg                                                                            >  2:604362/1‑93 (MQ=255)

            atatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAg                                                                            >  2:2533763/1‑93 (MQ=255)

             tatCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGc                                                                           >  2:5816149/1‑93 (MQ=255)

              atCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCg                                                                          <  2:3916529/93‑1 (MQ=255)

              atCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCg                                                                          >  2:3064259/1‑93 (MQ=255)

               tCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCgg                                                                         >  1:3429596/1‑93 (MQ=255)

                ccACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGc                                                                        <  1:845299/93‑1 (MQ=255)

                  aCGCGATGTCGCAACTGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc                                                                      <  1:501173/93‑1 (MQ=255)

                  aCGCGATGTCGCAACGGTGTATGACCAACCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTc                                                                      <  2:679345/93‑1 (MQ=255)

                    gcgATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCca                                                                    >  2:2391745/1‑93 (MQ=255)

                    gcgATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCca                                                                    >  2:3019576/1‑93 (MQ=255)

                      gATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCcaca                                                                  <  2:3972708/93‑1 (MQ=255)

                       aTGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACaa                                                                 <  1:190721/93‑1 (MQ=255)

                       aTGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACaa                                                                 >  2:4019059/1‑93 (MQ=255)

                        tGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAg                                                                >  1:5426517/1‑93 (MQ=255)

                        tGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATGCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAg                                                                <  1:983862/93‑1 (MQ=255)

                            gCAACGGGGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCt                                                            >  2:3600550/1‑93 (MQ=255)

                             cAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTg                                                           <  1:23636/93‑1 (MQ=255)

                              aaCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGa                                                          <  2:1363076/93‑1 (MQ=255)

                              aaCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGa                                                          >  2:4696719/1‑93 (MQ=255)

                              aaCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGa                                                          <  2:887414/93‑1 (MQ=255)

                               aCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAt                                                         >  2:2250897/1‑93 (MQ=255)

                               aCGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGAt                                                         <  2:2057136/93‑1 (MQ=255)

                                cGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATg                                                        <  1:4145778/93‑1 (MQ=255)

                                 ggTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGc                                                       <  2:5304081/93‑1 (MQ=255)

                                 ggTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGc                                                       >  1:3397628/1‑93 (MQ=255)

                                 ggTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGc                                                       <  1:2555075/93‑1 (MQ=255)

                                   tgtATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGGCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCaa                                                     >  1:4441304/1‑93 (MQ=255)

                                     tATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAAt                                                   <  1:2448382/93‑1 (MQ=255)

                                     tATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAAt                                                   >  2:4299136/1‑93 (MQ=255)

                                     tATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAAt                                                   >  2:3204858/1‑93 (MQ=255)

                                      aTGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATc                                                  >  2:2319908/1‑93 (MQ=255)

                                        gACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCaa                                                <  2:5704746/93‑1 (MQ=255)

                                         aCCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTATGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAc                                               >  1:3379571/1‑93 (MQ=255)

                                             aaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTcc                                           <  2:4244111/93‑1 (MQ=255)

                                             aaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTcc                                           >  2:201851/1‑93 (MQ=255)

                                             aaCCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTcc                                           <  1:3064635/93‑1 (MQ=255)

                                               ccAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtt                                         <  1:2004782/93‑1 (MQ=255)

                                               ccAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtt                                         >  1:4591565/1‑93 (MQ=255)

                                               ccAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtt                                         <  1:3789946/93‑1 (MQ=255)

                                                 aGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtttt                                       <  1:5823610/93‑1 (MQ=255)

                                                 aGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtttt                                       >  2:4791540/1‑93 (MQ=255)

                                                 aGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCtttt                                       <  1:4637077/93‑1 (MQ=255)

                                                  gAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTg                                      >  1:1815767/1‑93 (MQ=255)

                                                  gAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTg                                      <  1:2339535/93‑1 (MQ=255)

                                                    aaTGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGcc                                    >  2:5999992/1‑93 (MQ=255)

                                                    aaTGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGcc                                    >  1:2098172/1‑93 (MQ=255)

                                                    aaTGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGcc                                    >  2:1661212/1‑93 (MQ=255)

                                                    aaTGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGcc                                    <  2:3680774/93‑1 (MQ=255)

                                                      tGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAt                                  >  2:4370435/1‑93 (MQ=255)

                                                      tGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAt                                  >  1:2211003/1‑93 (MQ=255)

                                                       gATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAtt                                 >  2:4637919/1‑93 (MQ=255)

                                                        aTCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTc                                <  1:4681694/93‑1 (MQ=255)

                                                         tCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCa                               >  2:4167427/1‑93 (MQ=255)

                                                         tCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCa                               >  2:2993810/1‑93 (MQ=255)

                                                         tCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCa                               <  1:3729350/93‑1 (MQ=255)

                                                            gCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaa                            >  2:4883215/1‑93 (MQ=255)

                                                            gCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaa                            >  1:1092549/1‑93 (MQ=255)

                                                            gCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaa                            >  2:701640/1‑93 (MQ=255)

                                                             cACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATaaa                           <  1:1691135/93‑1 (MQ=255)

                                                              aCCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAc                          <  1:143656/93‑1 (MQ=255)

                                                               ccTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAca                         >  1:4962280/1‑93 (MQ=255)

                                                               ccTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAca                         >  2:2733865/1‑93 (MQ=255)

                                                                 cgTAATTCCCCGCCCTTTTTGGCCTCCCCCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcatc                       <  1:1004036/92‑1 (MQ=255)

                                                                  gTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcatca                      >  2:2647678/1‑93 (MQ=255)

                                                                  gTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcatca                      <  1:3134250/93‑1 (MQ=255)

                                                                  gTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcatca                      >  2:5004746/1‑93 (MQ=255)

                                                                  gTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcatca                      <  1:959522/93‑1 (MQ=255)

                                                                  gTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAcatca                      <  1:2676325/93‑1 (MQ=255)

                                                                    aaTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACatcatc                    >  2:6233846/1‑93 (MQ=255)

                                                                    aaTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACatcatc                    <  1:1354816/93‑1 (MQ=255)

                                                                    aaTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACatcatc                    >  2:4524429/1‑93 (MQ=255)

                                                                    aaTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACatcatc                    <  1:763582/93‑1 (MQ=255)

                                                                     aTTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCt                   >  1:612396/1‑93 (MQ=255)

                                                                       tCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTgg                 <  1:2236070/93‑1 (MQ=255)

                                                                       tCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTgg                 >  1:430921/1‑93 (MQ=255)

                                                                       tCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCATTTCATAAAAATCATCTgg                 >  1:5444944/1‑93 (MQ=255)

                                                                        cccTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGa                <  2:3429589/93‑1 (MQ=255)

                                                                         ccTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGAt               >  1:1140498/1‑93 (MQ=255)

                                                                          cTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATa              >  1:688372/1‑93 (MQ=255)

                                                                          cTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATa              <  2:752817/93‑1 (MQ=255)

                                                                           tGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACGTCATCTGGATaa             >  2:1755501/1‑93 (MQ=255)

                                                                           tGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATaa             >  1:5745433/1‑93 (MQ=255)

                                                                           tGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATaa             >  2:125271/1‑93 (MQ=255)

                                                                           tGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATaa             >  2:1281982/1‑93 (MQ=255)

                                                                           cgCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATaa             <  1:1629826/92‑1 (MQ=255)

                                                                            gCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAt            <  1:3867812/93‑1 (MQ=255)

                                                                             cccTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGCCCTGATGCAAATCAACGTCCTTTTGCCCTTCATAATCATCATCTGGATAATc           >  1:2790149/1‑93 (MQ=255)

                                                                             cccTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATc           <  1:1679026/93‑1 (MQ=255)

                                                                                tttttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGc        <  2:3795156/93‑1 (MQ=255)

                                                                                tttttGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGc        >  1:3840020/1‑93 (MQ=255)

                                                                                    tGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGa    <  2:5392014/93‑1 (MQ=255)

                                                                                      gCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGc  <  2:5862679/93‑1 (MQ=255)

                                                                                      gCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGc  <  1:522357/93‑1 (MQ=255)

TGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGC  >  NC_000913/1920395‑1920573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TAATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATA  >  NC_000913/1920392‑1920577

TAATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTC                                                                                              >  SRR4302533.261793/1‑94 (MQ=60)

 AATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCC                                                                                             <  SRR4302533.1097929/94‑1 (MQ=60)

 AATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCC                                                                                             >  SRR4302533.5557116/1‑94 (MQ=60)

 AATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCC                                                                                             <  SRR4302533.128654/94‑1 (MQ=60)

 AATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCC                                                                                             >  SRR4302533.5964125/1‑94 (MQ=60)

  ATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCA                                                                                            >  SRR4302533.928868/1‑94 (MQ=60)

  ATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCA                                                                                            <  SRR4302533.2505921/94‑1 (MQ=60)

        GTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAAT                                                                                      <  SRR4302533.2418269/94‑1 (MQ=60)

        GTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAAT                                                                                      <  SRR4302533.2899678/94‑1 (MQ=60)

        GTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAAT                                                                                      >  SRR4302533.1686826/1‑94 (MQ=60)

         TTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATC                                                                                     <  SRR4302533.3762152/94‑1 (MQ=60)

         TTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATC                                                                                     <  SRR4302533.299587/94‑1 (MQ=60)

          TGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCG                                                                                    <  SRR4302533.6206071/94‑1 (MQ=60)

            CCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCG                                                                                  >  SRR4302533.3641049/1‑94 (MQ=60)

              AATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAG                                                                                <  SRR4302533.290287/94‑1 (MQ=60)

              AATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAG                                                                                <  SRR4302533.6112246/94‑1 (MQ=60)

              AATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAG                                                                                <  SRR4302533.2967529/94‑1 (MQ=60)

              AATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAG                                                                                <  SRR4302533.3942760/94‑1 (MQ=60)

               ATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGC                                                                               >  SRR4302533.1271011/1‑94 (MQ=60)

               ATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGC                                                                               <  SRR4302533.3566839/94‑1 (MQ=60)

                TATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCG                                                                              <  SRR4302533.4667278/94‑1 (MQ=60)

                 ATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGG                                                                             >  SRR4302533.3450784/1‑94 (MQ=60)

                 ATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGG                                                                             >  SRR4302533.3045554/1‑94 (MQ=60)

                 ATCCACGCGATGTCGCAACGGTGTAAGACGAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGG                                                                             <  SRR4302533.4627808/94‑1 (MQ=60)

                   CCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCT                                                                           <  SRR4302533.850244/94‑1 (MQ=60)

                    CACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTC                                                                          >  SRR4302533.2847973/1‑94 (MQ=60)

                     ACGCGATGTCGCAACTGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCC                                                                         <  SRR4302533.504155/94‑1 (MQ=60)

                      CGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTTCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCA                                                                        >  SRR4302533.5997436/1‑94 (MQ=60)

                        CGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACA                                                                      <  SRR4302533.2233925/94‑1 (MQ=60)

                          ATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAG                                                                    <  SRR4302533.191919/94‑1 (MQ=60)

                          ATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAG                                                                    >  SRR4302533.5459197/1‑94 (MQ=60)

                           TGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGA                                                                   >  SRR4302533.842001/1‑94 (MQ=60)

                           TGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATGCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGA                                                                   <  SRR4302533.989630/94‑1 (MQ=60)

                            GTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGAC                                                                  >  SRR4302533.343751/1‑94 (MQ=60)

                              CGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCT                                                                >  SRR4302533.1778773/1‑94 (MQ=60)

                              CGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCT                                                                >  SRR4302533.1371804/1‑94 (MQ=60)

                              CGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCT                                                                <  SRR4302533.2200704/94‑1 (MQ=60)

                               GCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTG                                                               <  SRR4302533.3348540/94‑1 (MQ=60)

                                CAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGA                                                              <  SRR4302533.23794/94‑1 (MQ=60)

                                CAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGA                                                              >  SRR4302533.4307057/1‑94 (MQ=60)

                                   CGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGC                                                           >  SRR4302533.3418611/1‑94 (MQ=60)

                                   CGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGC                                                           <  SRR4302533.5632098/94‑1 (MQ=60)

                                   CGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGC                                                           <  SRR4302533.4170902/94‑1 (MQ=60)

                                    GGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCA                                                          <  SRR4302533.4594771/94‑1 (MQ=60)

                                    GGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCA                                                          <  SRR4302533.2570793/94‑1 (MQ=60)

                                    GGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCA                                                          >  SRR4302533.895400/1‑94 (MQ=60)

                                     GTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGGCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAA                                                         >  SRR4302533.4468156/1‑94 (MQ=60)

                                     GTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAA                                                         <  SRR4302533.727612/94‑1 (MQ=60)

                                        TATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATC                                                      <  SRR4302533.2463494/94‑1 (MQ=60)

                                        TATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATC                                                      >  SRR4302533.414486/1‑94 (MQ=60)

                                         ATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCA                                                     <  SRR4302533.2291544/94‑1 (MQ=60)

                                         ATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCA                                                     >  SRR4302533.6215349/1‑94 (MQ=60)

                                           GACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTATGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAAC                                                   >  SRR4302533.3400433/1‑94 (MQ=60)

                                              CAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTC                                                >  SRR4302533.958118/1‑94 (MQ=60)

                                                AACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCT                                              <  SRR4302533.3083457/94‑1 (MQ=60)

                                                 ACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTT                                             >  SRR4302533.4619380/1‑94 (MQ=60)

                                                  CCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTT                                            <  SRR4302533.2017130/94‑1 (MQ=60)

                                                  CCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTT                                            <  SRR4302533.3813153/94‑1 (MQ=60)

                                                   CAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTT                                           >  SRR4302533.2362776/1‑94 (MQ=60)

                                                    AGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTG                                          <  SRR4302533.4665176/94‑1 (MQ=60)

                                                    AGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTG                                          <  SRR4302533.5858787/94‑1 (MQ=60)

                                                    AGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTG                                          >  SRR4302533.2418794/1‑94 (MQ=60)

                                                    AGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTG                                          >  SRR4302533.1826853/1‑94 (MQ=60)

                                                     GAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGC                                         <  SRR4302533.2354023/94‑1 (MQ=60)

                                                      AAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCC                                        <  SRR4302533.2339863/94‑1 (MQ=60)

                                                      AAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCC                                        >  SRR4302533.2111116/1‑94 (MQ=60)

                                                       AATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACCAGACCTGATGCAAATCAACGTCCTTTTGCCA                                       >  SRR4302533.2734141/1‑94 (MQ=60)

                                                       AATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTGCTTTTGCCA                                       >  SRR4302533.973120/1‑94 (MQ=60)

                                                        ATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAT                                      <  SRR4302533.4689213/94‑1 (MQ=60)

                                                        ATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCAT                                      >  SRR4302533.2224637/1‑94 (MQ=60)

                                                         TGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATT                                     >  SRR4302533.1268865/1‑94 (MQ=60)

                                                         TGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATT                                     <  SRR4302533.2047856/94‑1 (MQ=60)

                                                         TGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATT                                     <  SRR4302533.1829568/94‑1 (MQ=60)

                                                          GATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTC                                    >  SRR4302533.3761803/1‑94 (MQ=60)

                                                          GATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTC                                    <  SRR4302533.4336688/94‑1 (MQ=60)

                                                           ATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCA                                   <  SRR4302533.4710063/94‑1 (MQ=60)

                                                           ATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCA                                   >  SRR4302533.1642101/1‑94 (MQ=60)

                                                            TCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCAT                                  <  SRR4302533.3752228/94‑1 (MQ=60)

                                                              AGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAA                                <  SRR4302533.2513454/94‑1 (MQ=60)

                                                              AGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAA                                >  SRR4302533.1099011/1‑94 (MQ=60)

                                                              AGCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAA                                <  SRR4302533.1709616/94‑1 (MQ=60)

                                                               GCACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAA                               >  SRR4302533.169356/1‑94 (MQ=60)

                                                                CACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAC                              >  SRR4302533.5472752/1‑94 (MQ=60)

                                                                CACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAC                              >  SRR4302533.5449072/1‑94 (MQ=60)

                                                                CACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAAC                              <  SRR4302533.1701379/94‑1 (MQ=60)

                                                                 ACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACA                             >  SRR4302533.4992368/1‑94 (MQ=60)

                                                                 ACCTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACA                             <  SRR4302533.144576/94‑1 (MQ=60)

                                                                   CTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATC                           >  SRR4302533.742484/1‑94 (MQ=60)

                                                                   CTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATC                           >  SRR4302533.5765109/1‑94 (MQ=60)

                                                                   CTGTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATC                           >  SRR4302533.1139606/1‑94 (MQ=60)

                                                                    CGTAATTCCCCGCCCTTTTTGGCCTCCCCCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCA                          <  SRR4302533.1009906/94‑1 (MQ=60)

                                                                     GTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCAT                         <  SRR4302533.2692737/94‑1 (MQ=60)

                                                                     GTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCAT                         <  SRR4302533.3153520/94‑1 (MQ=60)

                                                                     GTAATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCAT                         <  SRR4302533.965165/94‑1 (MQ=60)

                                                                       AATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCT                       <  SRR4302533.1362959/94‑1 (MQ=60)

                                                                       AATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCT                       <  SRR4302533.768081/94‑1 (MQ=60)

                                                                       AATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCT                       >  SRR4302533.1538276/1‑94 (MQ=60)

                                                                       AATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCT                       >  SRR4302533.615997/1‑94 (MQ=60)

                                                                        ATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTG                      <  SRR4302533.2765145/94‑1 (MQ=60)

                                                                        ATTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTG                      <  SRR4302533.1940591/94‑1 (MQ=60)

                                                                         TTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGG                     >  SRR4302533.433490/1‑94 (MQ=60)

                                                                         TTCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCATTTCATAAAAATCATCTGG                     >  SRR4302533.5477751/1‑94 (MQ=60)

                                                                          TCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGA                    <  SRR4302533.3814716/94‑1 (MQ=60)

                                                                          TCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGA                    >  SRR4302533.5131289/1‑94 (MQ=60)

                                                                          TCCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGA                    <  SRR4302533.2249894/94‑1 (MQ=60)

                                                                           CCCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGAT                   >  SRR4302533.1147284/1‑94 (MQ=60)

                                                                            CCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATA                  >  SRR4302533.692442/1‑94 (MQ=60)

                                                                            CCTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATA                  >  SRR4302533.450406/1‑94 (MQ=60)

                                                                             CTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAA                 >  SRR4302533.3407927/1‑94 (MQ=60)

                                                                             CTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAA                 <  SRR4302533.619344/94‑1 (MQ=60)

                                                                             CTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAA                 >  SRR4302533.5780103/1‑94 (MQ=60)

                                                                             CTGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAA                 >  SRR4302533.5825909/1‑94 (MQ=60)

                                                                              TGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAT                >  SRR4302533.5220845/1‑94 (MQ=60)

                                                                              TGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAT                >  SRR4302533.2682167/1‑94 (MQ=60)

                                                                              TGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAT                <  SRR4302533.889573/94‑1 (MQ=60)

                                                                              CGCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAAT                <  SRR4302533.1639699/94‑1 (MQ=60)

                                                                               GCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGCCCTGATGCAAATCAACGTCCTTTTGCCCTTCATAATCATCATCTGGATAATC               >  SRR4302533.2807307/1‑94 (MQ=60)

                                                                               GCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATC               <  SRR4302533.3129555/94‑1 (MQ=60)

                                                                               GCCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATC               <  SRR4302533.3891423/94‑1 (MQ=60)

                                                                                CCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCG              <  SRR4302533.475576/94‑1 (MQ=60)

                                                                                CCCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCG              <  SRR4302533.1689195/94‑1 (MQ=60)

                                                                                 CCTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGG             >  SRR4302533.202176/1‑94 (MQ=60)

                                                                                  CTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGC            >  SRR4302533.3863478/1‑94 (MQ=60)

                                                                                  CTTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGC            >  SRR4302533.3879726/1‑94 (MQ=60)

                                                                                   TTTTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCA           <  SRR4302533.5000525/94‑1 (MQ=60)

                                                                                     TTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATG         <  SRR4302533.1035738/94‑1 (MQ=60)

                                                                                     TTTGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATG         <  SRR4302533.3493276/94‑1 (MQ=60)

                                                                                       TGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAG       <  SRR4302533.3733354/94‑1 (MQ=60)

                                                                                       TGGCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAG       <  SRR4302533.3360968/94‑1 (MQ=60)

                                                                                         GCGTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCA     <  SRR4302533.525457/94‑1 (MQ=60)

                                                                                           GTCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAAT   >  SRR4302533.4947476/1‑94 (MQ=60)

                                                                                            TCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATA  <  SRR4302533.2831876/94‑1 (MQ=60)

                                                                                            TCCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATA  <  SRR4302533.3576641/94‑1 (MQ=60)

TAATGCAGGTTGCCAATATCCACGCGATGTCGCAACGGTGTATGACCAAACCAGAAATGATCAGCACCTGTAATTCCCTGCCCTTTTTGGCGTTCACCTAATCGCGAGCGGCTCCACAAGACCTGATGCAAATCAACGTCCTTTTGCCATTCATAAACATCATCTGGATAATCGGCATGAGCAATA  >  NC_000913/1920392‑1920577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`