Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,975,051	G→A	A38V (GCC→GTC)	motA ←	MotA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,975,051	0	G	A	100.0%	890.4 / NA	242	A38V (GCC→GTC)	motA	MotA
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (131/111); total (131/111)

Only 100 of 243 total aligned reads displayed.

GAGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGGCAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTACCGAGAACAACC  >  NC_000913/1974961‑1975140

gAGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACa                                                                                          <  2:1381522/93‑1 (MQ=255)

 aGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACaa                                                                                         <  2:56896/93‑1 (MQ=255)

  gCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACaat                                                                                        >  2:3369508/1‑93 (MQ=255)

     acgaAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACaataat                                                                                     >  1:1369978/1‑93 (MQ=255)

      cgaAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATc                                                                                    <  2:115325/93‑1 (MQ=255)

       gaAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCa                                                                                   >  2:597713/1‑93 (MQ=255)

       gaAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTGGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCa                                                                                   >  1:4436199/1‑93 (MQ=255)

        aaaCAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCAc                                                                                  <  1:5691884/93‑1 (MQ=255)

         aaCAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCAcc                                                                                 >  1:2697119/1‑93 (MQ=255)

          aCAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCa                                                                                <  2:1557286/93‑1 (MQ=255)

             gCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGtt                                                                             >  2:4882953/1‑93 (MQ=255)

               aaCGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCa                                                                           >  2:2564375/1‑93 (MQ=255)

                 cGGCAGGGCCTGCAGCGTGCCTTTAATCGCTTCGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGc                                                                         <  2:2347446/93‑1 (MQ=255)

                  ggCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCg                                                                        <  2:770326/93‑1 (MQ=255)

                   gCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCgg                                                                       <  2:4977657/93‑1 (MQ=255)

                   gCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCgg                                                                       <  1:4297281/93‑1 (MQ=255)

                   gCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCgg                                                                       >  1:5177585/1‑93 (MQ=255)

                     aGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGt                                                                     <  1:3508569/93‑1 (MQ=255)

                     aGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGt                                                                     <  1:1806616/93‑1 (MQ=255)

                      gcgcCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCggggt                                                                    >  2:421622/1‑91 (MQ=255)

                      gcgcCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGtt                                                                    <  1:4852511/93‑1 (MQ=255)

                      gcgcCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGtt                                                                    >  2:4423440/1‑93 (MQ=255)

                       cgcCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGAT‑AACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGa                                                                  <  1:5077679/93‑1 (MQ=255)

                        gcCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGa                                                                  <  2:4136117/93‑1 (MQ=255)

                        gcCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGa                                                                  <  1:5639082/93‑1 (MQ=255)

                        gcCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGa                                                                  >  1:789332/1‑93 (MQ=255)

                         ccTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGAt                                                                 >  1:5490555/1‑93 (MQ=255)

                         ccTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGAt                                                                 >  1:2477093/1‑93 (MQ=255)

                         ccTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGAt                                                                 >  1:1580034/1‑93 (MQ=255)

                          cTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATa                                                                >  1:3849458/1‑93 (MQ=255)

                          cTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATa                                                                <  2:1897376/93‑1 (MQ=255)

                           ttCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATag                                                               >  1:6247289/1‑93 (MQ=255)

                           ttCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATag                                                               <  2:5276647/93‑1 (MQ=255)

                           ttCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATag                                                               <  2:4669088/93‑1 (MQ=255)

                            tCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATaga                                                              <  1:3201722/93‑1 (MQ=255)

                            tCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATaga                                                              <  1:3070950/93‑1 (MQ=255)

                                cGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGc                                                          >  2:2597357/1‑93 (MQ=255)

                                cGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGc                                                          >  1:1657410/1‑93 (MQ=255)

                                 gTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCt                                                         >  1:284139/1‑93 (MQ=255)

                                  tGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTc                                                        <  1:3885883/93‑1 (MQ=255)

                                   gCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTcc                                                       >  2:4300810/1‑93 (MQ=255)

                                    ccTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCa                                                      >  1:1961167/1‑93 (MQ=255)

                                     cTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCaa                                                     <  2:709402/93‑1 (MQ=255)

                                     cTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCaa                                                     <  2:1072022/93‑1 (MQ=255)

                                     cTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCaa                                                     <  1:1514738/93‑1 (MQ=255)

                                     cTTTAATCGCTAAGCCAATATTACCAACGAAAAACAACCAAATCCCAGCAACGACTAAAATCACCAGTTCAAAGGGTTGATAGAGTGCTCCaa                                                     <  2:6307500/93‑1 (MQ=255)

                                      tttAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAg                                                    >  2:2694061/1‑93 (MQ=255)

                                      tttAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAg                                                    <  2:2845751/93‑1 (MQ=255)

                                      tttAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAg                                                    >  2:4863997/1‑93 (MQ=255)

                                       ttAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAgg                                                   >  1:5412058/1‑93 (MQ=255)

                                        tAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGc                                                  >  2:6276697/1‑93 (MQ=255)

                                         aaTCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCt                                                 >  2:4774146/1‑93 (MQ=255)

                                         aaTCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCt                                                 >  2:804556/1‑93 (MQ=255)

                                         aaTCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCt                                                 >  2:171152/1‑93 (MQ=255)

                                         aaTCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCt                                                 >  1:5230799/1‑93 (MQ=255)

                                           tCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTc                                               <  1:1878714/93‑1 (MQ=255)

                                             gCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCa                                             <  2:5140816/93‑1 (MQ=255)

                                             gCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCa                                             >  1:4847695/1‑93 (MQ=255)

                                              cTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCAc                                            >  1:2546183/1‑93 (MQ=255)

                                                ttGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCg                                          >  1:808960/1‑93 (MQ=255)

                                                 tGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCgg                                         >  2:2480831/1‑93 (MQ=255)

                                                  gCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGt                                        <  1:3732402/93‑1 (MQ=255)

                                                   ccATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGTTTGATAGAGTGCTCCAAGGCTTCCACCGGtc                                       <  1:6190257/93‑1 (MQ=255)

                                                   ccATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGtc                                       >  2:1406837/1‑93 (MQ=255)

                                                   ccATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGtc                                       >  2:3406271/1‑93 (MQ=255)

                                                   ccATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGtc                                       >  2:3752365/1‑93 (MQ=255)

                                                    cATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGtca                                      >  2:3165835/1‑93 (MQ=255)

                                                     attattGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGtca‑t                                    >  2:5197195/1‑93 (MQ=255)

                                                      ttattGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGtca‑tc                                   >  1:5274353/1‑93 (MQ=255)

                                                       tattGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGtca‑tca                                  <  1:1464176/93‑1 (MQ=255)

                                                         ttGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCaaa                                <  1:2190641/93‑1 (MQ=255)

                                                         ttGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCaaa                                >  1:2733078/1‑93 (MQ=255)

                                                             cgacgaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAAc                            <  1:5986556/93‑1 (MQ=255)

                                                             cgacgaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAAc                            <  1:4981646/93‑1 (MQ=255)

                                                             cgacgaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAAc                            <  2:5467046/93‑1 (MQ=255)

                                                              gacgaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAAcc                           >  2:1425219/1‑93 (MQ=255)

                                                              gacgaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAAcc                           >  2:461363/1‑93 (MQ=255)

                                                              gacgaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAAcc                           <  1:5795928/93‑1 (MQ=255)

                                                                cgaTAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAAccgc                         <  1:4157371/93‑1 (MQ=255)

                                                                     aaCGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGaaa                    >  1:3693427/1‑93 (MQ=255)

                                                                       cGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAAc                  <  2:5961448/93‑1 (MQ=255)

                                                                        gACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACt                 >  2:3607729/1‑93 (MQ=255)

                                                                        caCCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACt                 <  1:1252613/92‑1 (MQ=255)

                                                                         aCCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATTCAAAAAAACACCCaaaaaa                 >  2:3918696/1‑91 (MQ=255)

                                                                         aCCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTg                <  2:3109837/93‑1 (MQ=255)

                                                                          cccAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGt               >  1:5291512/1‑93 (MQ=255)

                                                                           ccAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTa              >  1:1072416/1‑93 (MQ=255)

                                                                           ccAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTa              >  1:5897834/1‑93 (MQ=255)

                                                                           ccAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTa              >  1:5246916/1‑93 (MQ=255)

                                                                             aaTCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTAcc            <  2:4905623/93‑1 (MQ=255)

                                                                             aaTCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTAcc            >  2:3875523/1‑93 (MQ=255)

                                                                             aaTCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTAcc            >  1:2323147/1‑93 (MQ=255)

                                                                                 ccTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTACCgaga        <  2:591652/93‑1 (MQ=255)

                                                                                  cTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTACCGAGaa       <  1:6110450/93‑1 (MQ=255)

                                                                                    gCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTACCGAGaaca     <  1:4066350/93‑1 (MQ=255)

                                                                                       ccGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTACCGAGAACAAcc  >  1:4707183/1‑93 (MQ=255)

                                                                                       ccGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTACCGAGAACAAcc  <  1:3579913/93‑1 (MQ=255)

                                                                                       ccGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTACCGAGAACAAcc  <  1:3276346/93‑1 (MQ=255)

                                                                                       ccGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTACCGAGAACAAcc  >  2:1845165/1‑93 (MQ=255)

                                                                                       ccGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTACCGAGAACAAcc  >  2:902221/1‑93 (MQ=255)

GAGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGGCAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA‑TCAAATAACCGCCGAAAACTGTACCGAGAACAACC  >  NC_000913/1974961‑1975140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGAGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGGCAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAGG  >  NC_000913/1974959‑1975143

TGGAGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGAC                                                                                             >  SRR4302533.4675634/1‑94 (MQ=60)

TGGAGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGAC                                                                                             <  SRR4302533.3509769/94‑1 (MQ=60)

   AGNGNCNANACNGCAACGGNAGNNNCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAAT                                                                                          <  SRR4302533.5204428/94‑1 (MQ=60)

   AGCGACGAAACAGCAGCGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAAT                                                                                          <  SRR4302533.5316195/94‑1 (MQ=60)

   AGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAAT                                                                                          <  SRR4302533.541295/94‑1 (MQ=60)

     CGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAA                                                                                        >  SRR4302533.174285/1‑94 (MQ=60)

      GACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAAT                                                                                       >  SRR4302533.1378212/1‑94 (MQ=60)

      GACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAAT                                                                                       <  SRR4302533.2066231/94‑1 (MQ=60)

        CGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTGGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCA                                                                                     >  SRR4302533.4463016/1‑94 (MQ=60)

          AAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACC                                                                                   <  SRR4302533.3727902/94‑1 (MQ=60)

          AAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACC                                                                                   >  SRR4302533.25201/1‑94 (MQ=60)

          AAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACC                                                                                   <  SRR4302533.5726260/94‑1 (MQ=60)

          AAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACC                                                                                   >  SRR4302533.2713644/1‑94 (MQ=60)

            ACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAG                                                                                 <  SRR4302533.5696450/94‑1 (MQ=60)

                CAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCAACAATAATCACCAGTTCA                                                                             >  SRR4302533.5043485/1‑94 (MQ=60)

                 AACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAG                                                                            >  SRR4302533.1778317/1‑94 (MQ=60)

                    GGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGG                                                                         >  SRR4302533.5208855/1‑94 (MQ=60)

                     GCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGG                                                                        <  SRR4302533.4323123/94‑1 (MQ=60)

                       AGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTT                                                                      <  SRR4302533.3530201/94‑1 (MQ=60)

                       AGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTT                                                                      <  SRR4302533.6195643/94‑1 (MQ=60)

                       AGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTT                                                                      <  SRR4302533.1817611/94‑1 (MQ=60)

                        GCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTG                                                                     <  SRR4302533.4881916/94‑1 (MQ=60)

                         CGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGA                                                                    >  SRR4302533.793977/1‑94 (MQ=60)

                         CGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGAT‑AACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGAT                                                                   <  SRR4302533.5108369/94‑1 (MQ=60)

                          GCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGAT                                                                   >  SRR4302533.1589552/1‑94 (MQ=60)

                          GCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGAT                                                                   >  SRR4302533.5523652/1‑94 (MQ=60)

                          GCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGAT                                                                   <  SRR4302533.5673173/94‑1 (MQ=60)

                          GCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGAT                                                                   >  SRR4302533.2492371/1‑94 (MQ=60)

                           CCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATA                                                                  >  SRR4302533.3872965/1‑94 (MQ=60)

                           CCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATA                                                                  <  SRR4302533.237945/94‑1 (MQ=60)

                           CCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATA                                                                  >  SRR4302533.1571428/1‑94 (MQ=60)

                            CTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAG                                                                 >  SRR4302533.2246016/1‑94 (MQ=60)

                            CTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAG                                                                 >  SRR4302533.5919902/1‑94 (MQ=60)

                            CTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAG                                                                 >  SRR4302533.6277701/1‑94 (MQ=60)

                            CTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAG                                                                 <  SRR4302533.3581684/94‑1 (MQ=60)

                            CTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAG                                                                 >  SRR4302533.6284675/1‑94 (MQ=60)

                            CTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAG                                                                 >  SRR4302533.5263601/1‑94 (MQ=60)

                             TTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGA                                                                >  SRR4302533.5949410/1‑94 (MQ=60)

                              TCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAG                                                               <  SRR4302533.3089804/94‑1 (MQ=60)

                              TCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAG                                                               <  SRR4302533.3221425/94‑1 (MQ=60)

                               CAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGT                                                              <  SRR4302533.487922/94‑1 (MQ=60)

                               CAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGT                                                              <  SRR4302533.1490074/94‑1 (MQ=60)

                                AGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTG                                                             <  SRR4302533.5917906/94‑1 (MQ=60)

                                 GCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGC                                                            >  SRR4302533.1667440/1‑94 (MQ=60)

                                  CGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCT                                                           >  SRR4302533.285878/1‑94 (MQ=60)

                                  CGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCT                                                           <  SRR4302533.4405598/94‑1 (MQ=60)

                                   GTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTC                                                          >  SRR4302533.693096/1‑94 (MQ=60)

                                    TGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCC                                                         <  SRR4302533.3909590/94‑1 (MQ=60)

                                     GCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCA                                                        >  SRR4302533.1973140/1‑94 (MQ=60)

                                      CCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAA                                                       <  SRR4302533.3247368/94‑1 (MQ=60)

                                       CTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAG                                                      >  SRR4302533.4018845/1‑94 (MQ=60)

                                       CTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAG                                                      <  SRR4302533.1523862/94‑1 (MQ=60)

                                        TTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGG                                                     >  SRR4302533.5444601/1‑94 (MQ=60)

                                        TTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGG                                                     >  SRR4302533.4842702/1‑94 (MQ=60)

                                          TAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCT                                                   >  SRR4302533.1885221/1‑94 (MQ=60)

                                          TAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCT                                                   >  SRR4302533.5262262/1‑94 (MQ=60)

                                           AATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTTAGCGGGTTGATAGAGTGCTCCAAGGCTT                                                  >  SRR4302533.6096708/1‑94 (MQ=60)

                                           AATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTT                                                  >  SRR4302533.3792105/1‑94 (MQ=60)

                                           AATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTT                                                  >  SRR4302533.5580158/1‑94 (MQ=60)

                                            ATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTC                                                 >  SRR4302533.5530040/1‑94 (MQ=60)

                                            ATCGCTTTGCCATTATTGCCGACGATAAACCACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTC                                                 >  SRR4302533.4710260/1‑94 (MQ=60)

                                             TCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCC                                                <  SRR4302533.2404172/94‑1 (MQ=60)

                                             TCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCC                                                <  SRR4302533.1890163/94‑1 (MQ=60)

                                             TCGCGTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCC                                                <  SRR4302533.2744398/94‑1 (MQ=60)

                                              CGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCA                                               <  SRR4302533.4178556/94‑1 (MQ=60)

                                              CGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCA                                               >  SRR4302533.4877073/1‑94 (MQ=60)

                                               GCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCAC                                              >  SRR4302533.2561849/1‑94 (MQ=60)

                                                CTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACC                                             <  SRR4302533.4064169/94‑1 (MQ=60)

                                                CTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACC                                             <  SRR4302533.525558/94‑1 (MQ=60)

                                                CTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACC                                             >  SRR4302533.811605/1‑94 (MQ=60)

                                                CTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACC                                             >  SRR4302533.3872466/1‑94 (MQ=60)

                                                CTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACC                                             <  SRR4302533.3644410/94‑1 (MQ=60)

                                                 TTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCG                                            >  SRR4302533.813710/1‑94 (MQ=60)

                                                 TTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCG                                            <  SRR4302533.1364873/94‑1 (MQ=60)

                                                  TTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGG                                           >  SRR4302533.5764493/1‑94 (MQ=60)

                                                   TGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGT                                          <  SRR4302533.4988218/94‑1 (MQ=60)

                                                    GCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTC                                         <  SRR4302533.3755298/94‑1 (MQ=60)

                                                     CCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGTTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA                                        <  SRR4302533.6227404/94‑1 (MQ=60)

                                                     CCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCA                                        >  SRR4302533.1529020/1‑94 (MQ=60)

                                                      CATTATTGCCGACGAT‑AACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCCGTCATC                                      >  SRR4302533.5414411/1‑94 (MQ=60)

                                                       ATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATC                                      >  SRR4302533.5305974/1‑94 (MQ=60)

                                                       ATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATC                                      >  SRR4302533.6269576/1‑94 (MQ=60)

                                                       ATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATC                                      >  SRR4302533.390181/1‑94 (MQ=60)

                                                       ATTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATC                                      >  SRR4302533.3265655/1‑94 (MQ=60)

                                                        TTATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCA                                     <  SRR4302533.3125198/94‑1 (MQ=60)

                                                         TATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAA                                    <  SRR4302533.1473000/94‑1 (MQ=60)

                                                          ATTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAA                                   >  SRR4302533.2749844/1‑94 (MQ=60)

                                                           TTGCCGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAAT                                  <  SRR4302533.2204136/94‑1 (MQ=60)

                                                               CGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACC                              <  SRR4302533.6022811/94‑1 (MQ=60)

                                                               CGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACC                              <  SRR4302533.5011847/94‑1 (MQ=60)

                                                               CGACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACC                              >  SRR4302533.1099105/1‑94 (MQ=60)

                                                                GACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCG                             <  SRR4302533.4868878/94‑1 (MQ=60)

                                                                GACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCG                             <  SRR4302533.5830946/94‑1 (MQ=60)

                                                                GACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCG                             >  SRR4302533.1931219/1‑94 (MQ=60)

                                                                GACGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCG                             >  SRR4302533.5460171/1‑94 (MQ=60)

                                                                  CGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCC                           <  SRR4302533.4971610/94‑1 (MQ=60)

                                                                  CGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCC                           <  SRR4302533.4243777/94‑1 (MQ=60)

                                                                  CGATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCC                           <  SRR4302533.4182561/94‑1 (MQ=60)

                                                                    ATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGA                         <  SRR4302533.6111697/94‑1 (MQ=60)

                                                                    ATAAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGA                         >  SRR4302533.1385339/1‑94 (MQ=60)

                                                                      AAACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAA                       >  SRR4302533.3716115/1‑94 (MQ=60)

                                                                        ACGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAAC                     <  SRR4302533.2960101/94‑1 (MQ=60)

                                                                         CGACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACT                    <  SRR4302533.2797910/94‑1 (MQ=60)

                                                                          GACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTG                   <  SRR4302533.160901/94‑1 (MQ=60)

                                                                          GACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTG                   >  SRR4302533.5284811/1‑94 (MQ=60)

                                                                          CACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTG                   <  SRR4302533.1260104/94‑1 (MQ=60)

                                                                           ACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGT                  >  SRR4302533.2949240/1‑94 (MQ=60)

                                                                           ACCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGT                  >  SRR4302533.5323194/1‑94 (MQ=60)

                                                                            CCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTA                 >  SRR4302533.1078737/1‑94 (MQ=60)

                                                                            CCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTA                 >  SRR4302533.5933454/1‑94 (MQ=60)

                                                                            CCCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTA                 >  SRR4302533.5278463/1‑94 (MQ=60)

                                                                             CCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTAC                <  SRR4302533.5190644/94‑1 (MQ=60)

                                                                             CCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTAC                >  SRR4302533.2576632/1‑94 (MQ=60)

                                                                             CCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTAC                <  SRR4302533.1988601/94‑1 (MQ=60)

                                                                             CCAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTAC                <  SRR4302533.529666/94‑1 (MQ=60)

                                                                              CAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACC               <  SRR4302533.2674512/94‑1 (MQ=60)

                                                                              CAATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACC               >  SRR4302533.2337527/1‑94 (MQ=60)

                                                                               AATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCG              >  SRR4302533.941808/1‑94 (MQ=60)

                                                                                ATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCTAAAACTGTACCGA             <  SRR4302533.3427197/94‑1 (MQ=60)

                                                                                ATCCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGA             >  SRR4302533.1462836/1‑94 (MQ=60)

                                                                                  CCCTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGA           >  SRR4302533.5154282/1‑94 (MQ=60)

                                                                                    CTGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAAC         <  SRR4302533.6147334/94‑1 (MQ=60)

                                                                                     TGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAACCTGTACCGAGAACA        <  SRR4302533.83496/94‑1 (MQ=60)

                                                                                     TGCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACA        <  SRR4302533.4188006/94‑1 (MQ=60)

                                                                                      GCACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAA       <  SRR4302533.4091102/94‑1 (MQ=60)

                                                                                       CACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAAC      >  SRR4302533.357774/1‑94 (MQ=60)

                                                                                        ACCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACC     >  SRR4302533.4735716/1‑94 (MQ=60)

                                                                                         CCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCA    <  SRR4302533.3601971/94‑1 (MQ=60)

                                                                                         CCGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCA    <  SRR4302533.3296580/94‑1 (MQ=60)

                                                                                          CGACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAG   <  SRR4302533.4387956/94‑1 (MQ=60)

                                                                                           GACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAGG  >  SRR4302533.2461122/1‑94 (MQ=60)

                                                                                           GACAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAGG  <  SRR4302533.1525451/94‑1 (MQ=60)

TGGAGCGACGAAACAGCAACGGCAGCGCCTTCAGCGTGCCTTTAATCGCTTTGCCATTATTGCCGACGATAAACGACCCAATCCCTGCACCGGCAATAATCACCAGTTCAGCGGGTTGATAGAGTGCTCCAAGGCTTCCACCGGTCATCAAATAACCGCCGAAAACTGTACCGAGAACAACCAGG  >  NC_000913/1974959‑1975143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`