Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,074,403	T→C	V25A (GTG→GCG)	yeeS →	putative DNA repair protein, RADC family

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,074,403	0	T	C	100.0%	563.2 / NA	176	V25A (GTG→GCG)	yeeS	putative DNA repair protein, RADC family
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (81/95); total (81/95)

Only 100 of 186 total aligned reads displayed.

GTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGA  >  NC_000913/2074314‑2074492

gTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGc                                                                                        >  1:2346358/1‑93 (MQ=255)

 tAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGcc                                                                                       <  2:6046179/93‑1 (MQ=255)

 tAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCAGCGCGGcc                                                                                       >  1:2518362/1‑93 (MQ=255)

  aaaGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCt                                                                                      >  1:5348858/1‑93 (MQ=255)

  aaaGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCt                                                                                      <  1:1353016/93‑1 (MQ=255)

     gTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCa                                                                                   >  1:3790058/1‑93 (MQ=255)

       agagGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCAcc                                                                                 >  1:4931337/1‑93 (MQ=255)

       agagGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCAcc                                                                                 <  2:4215949/93‑1 (MQ=255)

        gaggagAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCt                                                                                >  1:323210/1‑93 (MQ=255)

           gagagaTGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCa                                                                             >  1:3123369/1‑93 (MQ=255)

            agagaTGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCAc                                                                            >  2:5631026/1‑93 (MQ=255)

              agaTGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCAccc                                                                          <  1:825005/93‑1 (MQ=255)

                 tGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTg                                                                       >  1:5728378/1‑93 (MQ=255)

                   aCGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTgca                                                                     <  1:3888847/93‑1 (MQ=255)

                     gCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTgcagc                                                                   <  1:887596/93‑1 (MQ=255)

                       ccGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCAc                                                                 >  1:161281/1‑93 (MQ=255)

                       ccGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCAc                                                                 >  2:2195055/1‑93 (MQ=255)

                       ccGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCAc                                                                 <  1:4395990/93‑1 (MQ=255)

                       ccGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCAc                                                                 <  2:455804/93‑1 (MQ=255)

                        cGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAATCCTGGACTGCCATCTTCATGTACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACg                                                                >  1:6298784/1‑93 (MQ=255)

                        cGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACg                                                                <  1:1992919/93‑1 (MQ=255)

                          gCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACggg                                                              >  2:3688235/1‑93 (MQ=255)

                            gAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGaa                                                            <  1:2960028/93‑1 (MQ=255)

                             aGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAAt                                                           <  1:2060640/93‑1 (MQ=255)

                             aGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAAt                                                           <  1:3360997/93‑1 (MQ=255)

                              gcgcAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATg                                                          <  2:1238969/93‑1 (MQ=255)

                                gcAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGc                                                        <  1:588082/93‑1 (MQ=255)

                                gcAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGc                                                        >  2:3937346/1‑93 (MQ=255)

                                gcAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGc                                                        >  1:320901/1‑93 (MQ=255)

                                    ccTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGAt                                                    <  2:3453295/93‑1 (MQ=255)

                                      tCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTc                                                  >  2:2047794/1‑93 (MQ=255)

                                      tCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTc                                                  <  1:1559661/93‑1 (MQ=255)

                                        aTTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTg                                                >  1:6090834/1‑93 (MQ=255)

                                         ttCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGa                                               >  2:862020/1‑93 (MQ=255)

                                          tCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGaa                                              >  1:2671494/1‑93 (MQ=255)

                                          tCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGaa                                              <  1:61369/93‑1 (MQ=255)

                                           cAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAAc                                             <  2:5981433/93‑1 (MQ=255)

                                            aaCGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACa                                            <  2:6232696/93‑1 (MQ=255)

                                            aaCGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACa                                            <  1:4731820/93‑1 (MQ=255)

                                            aaCGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACa                                            <  1:3454655/93‑1 (MQ=255)

                                               gggCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATgg                                         >  2:5805982/1‑93 (MQ=255)

                                               gggCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATgg                                         >  2:2822630/1‑93 (MQ=255)

                                               gggCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATgg                                         <  1:661638/93‑1 (MQ=255)

                                               gggCCCAGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATgg                                         <  1:5855804/93‑1 (MQ=255)

                                                ggCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCGCGGGAATGGCTGATTCTGAACATGGc                                        <  1:2360732/93‑1 (MQ=255)

                                                   ccTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCgtg                                     <  2:4917369/93‑3 (MQ=255)

                                                    cagAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGa                                    <  2:5641895/91‑1 (MQ=255)

                                                     tGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAc                                   >  1:4151649/1‑93 (MQ=255)

                                                     tGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAc                                   <  2:2575268/93‑1 (MQ=255)

                                                        aaaCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTgg                                >  1:1080582/1‑93 (MQ=255)

                                                         aaCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGTAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGa                               <  1:6014202/93‑1 (MQ=255)

                                                         aaCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTggg                               >  2:3774316/1‑92 (MQ=255)

                                                         aaCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGa                               <  1:3192504/93‑1 (MQ=255)

                                                         aaCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGa                               <  1:2111386/93‑1 (MQ=255)

                                                         aaCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGa                               <  1:4572826/93‑1 (MQ=255)

                                                          aCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAg                              <  1:4337354/93‑1 (MQ=255)

                                                             cTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGGCTGGAGCGt                           >  1:5617349/1‑93 (MQ=255)

                                                             cTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGt                           >  2:616027/1‑93 (MQ=255)

                                                             cTGGACCGCCATCTTAATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGt                           >  2:3077014/1‑93 (MQ=255)

                                                              tGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTg                          <  2:4333448/93‑1 (MQ=255)

                                                              tGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTg                          >  2:823038/1‑93 (MQ=255)

                                                               ggACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTga                         <  1:1278226/93‑1 (MQ=255)

                                                                gACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTgaa                        <  2:4472918/93‑1 (MQ=255)

                                                                 aCCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTgaag                       <  1:4470905/93‑1 (MQ=255)

                                                                 aCCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTgaag                       >  1:4212169/1‑93 (MQ=255)

                                                                   cGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTgaagaa                     <  1:4150828/93‑1 (MQ=255)

                                                                    gCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAAt                    >  1:3457284/1‑93 (MQ=255)

                                                                      cATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTc                  <  2:5553301/93‑1 (MQ=255)

                                                                      cATCTTCATGAACCCGGCGCCGCCTTTACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACACGGCGGGACTCGAACGCGAAGAATTc                  >  2:1613604/1‑93 (MQ=255)

                                                                       aTCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGGCTGGAGCGGGAAGAAttgc                 >  2:1115653/1‑91 (MQ=37)

                                                                       aTCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGCCGGGAGGGAGGAGCATTca                 >  1:5433812/1‑92 (MQ=255)

                                                                       aTCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTcc                 >  1:2225192/1‑93 (MQ=255)

                                                                        tCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCg                <  2:3011027/93‑1 (MQ=255)

                                                                        tCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCg                >  1:5953564/1‑93 (MQ=255)

                                                                          ttCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCggg              <  2:1570140/93‑1 (MQ=255)

                                                                           tCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGTGAATTGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGt             >  2:3138691/1‑93 (MQ=255)

                                                                           tCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCgggg             >  2:2234969/1‑92 (MQ=255)

                                                                           tCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGt             <  1:3719832/93‑1 (MQ=255)

                                                                           tCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGt             <  1:1851784/93‑1 (MQ=255)

                                                                           tCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGt             >  1:2851077/1‑93 (MQ=255)

                                                                           tCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGt             <  1:4696690/93‑1 (MQ=255)

                                                                            cATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTTCGGGTg            >  2:5945081/1‑93 (MQ=255)

                                                                            cATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTg            >  2:3567840/1‑93 (MQ=255)

                                                                             aTGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGGGTGAAGAATTCCGGGTGc           >  1:1446038/1‑93 (MQ=255)

                                                                             aTGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGc           <  2:5031187/93‑1 (MQ=255)

                                                                              tGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCt          >  1:3668883/1‑93 (MQ=255)

                                                                               gAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTg         <  2:638847/93‑1 (MQ=255)

                                                                                aaCCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGCGCGTGACGAATTCCGGGCGCTGt        >  1:3021499/1‑93 (MQ=255)

                                                                                aaCCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGt        <  2:2379553/93‑1 (MQ=255)

                                                                                 aCCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTa       <  2:4842515/93‑1 (MQ=255)

                                                                                  cccGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTAt      >  1:1874465/1‑93 (MQ=255)

                                                                                   ccGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATc     <  2:3166552/93‑1 (MQ=255)

                                                                                    cGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCt    >  2:5517162/1‑93 (MQ=255)

                                                                                     ggCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTg   <  2:711359/93‑1 (MQ=255)

                                                                                      gcgcGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGa  >  2:5408238/1‑93 (MQ=255)

                                                                                      gcgcGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGa  <  1:3570226/93‑1 (MQ=255)

                                                                                      gcgcGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGa  <  1:2427080/93‑1 (MQ=255)

                                                                                      gcgcGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGa  <  1:2742158/93‑1 (MQ=255)

                                                                                      gcgcGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGa  >  1:1677415/1‑93 (MQ=255)

                                                                                      gcgcGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGa  >  1:1863620/1‑93 (MQ=255)

GTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGA  >  NC_000913/2074314‑2074492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAAGGTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAA  >  NC_000913/2074310‑2074496

GAAGGTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGC                                                                                               >  SRR4302533.677881/1‑94 (MQ=60)

GAAGGTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGC                                                                                               <  SRR4302533.2726547/94‑1 (MQ=60)

GAAGGTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGC                                                                                               >  SRR4302533.436216/1‑94 (MQ=60)

GAAGGTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGC                                                                                               >  SRR4302533.1749905/1‑94 (MQ=60)

   GGTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGC                                                                                            >  SRR4302533.2360879/1‑94 (MQ=60)

    GTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCC                                                                                           <  SRR4302533.3713019/94‑1 (MQ=60)

    GTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCAGCGCGGCC                                                                                           >  SRR4302533.2533877/1‑94 (MQ=60)

     TAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCT                                                                                          >  SRR4302533.5380949/1‑94 (MQ=60)

      AAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTT                                                                                         <  SRR4302533.1361152/94‑1 (MQ=60)

      AAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTT                                                                                         >  SRR4302533.1379711/1‑94 (MQ=60)

        AGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCA                                                                                       >  SRR4302533.3813265/1‑94 (MQ=60)

          TAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACC                                                                                     >  SRR4302533.4961198/1‑94 (MQ=60)

           AGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCT                                                                                    <  SRR4302533.1817104/94‑1 (MQ=60)

           AGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCT                                                                                    >  SRR4302533.325181/1‑94 (MQ=60)

             AGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCC                                                                                  >  SRR4302533.2099262/1‑94 (MQ=60)

             AGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCC                                                                                  <  SRR4302533.4909741/94‑1 (MQ=60)

              GGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCA                                                                                 >  SRR4302533.3142571/1‑94 (MQ=60)

               GAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCAC                                                                                <  SRR4302533.2243368/94‑1 (MQ=60)

                 GAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCC                                                                              <  SRR4302533.4077763/94‑1 (MQ=60)

                  AGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCG                                                                             >  SRR4302533.250557/1‑94 (MQ=60)

                  AGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCG                                                                             <  SRR4302533.829847/94‑1 (MQ=60)

                    ATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTG                                                                           >  SRR4302533.5762970/1‑94 (MQ=60)

                      GACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCA                                                                         <  SRR4302533.5503930/94‑1 (MQ=60)

                       ACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAG                                                                        <  SRR4302533.3912574/94‑1 (MQ=60)

                       ACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAG                                                                        >  SRR4302533.4234159/1‑94 (MQ=60)

                       ACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAG                                                                        >  SRR4302533.3221023/1‑94 (MQ=60)

                       ACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAG                                                                        <  SRR4302533.1648026/94‑1 (MQ=60)

                        CGCCCGACGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGC                                                                       <  SRR4302533.1329713/94‑1 (MQ=60)

                         GCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCA                                                                      <  SRR4302533.892806/94‑1 (MQ=60)

                          CCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAACCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCAC                                                                     <  SRR4302533.3511311/94‑1 (MQ=60)

                          CCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCAC                                                                     >  SRR4302533.162308/1‑94 (MQ=60)

                          CCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTACCCTCCACCCGTGCAGCAC                                                                     <  SRR4302533.192248/94‑1 (MQ=60)

                           CCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAATCCTGGACTGCCATCTTCATGTACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACG                                                                    >  SRR4302533.6336386/1‑94 (MQ=60)

                           CCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACG                                                                    <  SRR4302533.4422531/94‑1 (MQ=60)

                            CGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGG                                                                   <  SRR4302533.2005141/94‑1 (MQ=60)

                             GGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGG                                                                  <  SRR4302533.1883854/94‑1 (MQ=60)

                             GGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGG                                                                  <  SRR4302533.5276938/94‑1 (MQ=60)

                                GAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAAT                                                               <  SRR4302533.2978120/94‑1 (MQ=60)

                                 GGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATG                                                              <  SRR4302533.6144725/94‑1 (MQ=60)

                                 AGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATG                                                              <  SRR4302533.3381760/94‑1 (MQ=60)

                                 AGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATG                                                              <  SRR4302533.2073347/94‑1 (MQ=60)

                                  GCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGG                                                             <  SRR4302533.3677432/94‑1 (MQ=60)

                                   CGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGC                                                            >  SRR4302533.322863/1‑94 (MQ=60)

                                    GCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCT                                                           <  SRR4302533.591555/94‑1 (MQ=60)

                                     CAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTG                                                          >  SRR4302533.2381818/1‑94 (MQ=60)

                                      AGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGA                                                         >  SRR4302533.5795476/1‑94 (MQ=60)

                                      AGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGA                                                         >  SRR4302533.642605/1‑94 (MQ=60)

                                        CCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATT                                                       <  SRR4302533.6234644/94‑1 (MQ=60)

                                          TCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCT                                                     <  SRR4302533.1569052/94‑1 (MQ=60)

                                           CATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTG                                                    >  SRR4302533.6127647/1‑94 (MQ=60)

                                             TTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAA                                                  >  SRR4302533.2687883/1‑94 (MQ=60)

                                             TTCAACGGGCCCTGAAAACCCTGGACCGCCATCCTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAA                                                  >  SRR4302533.1315558/1‑94 (MQ=60)

                                              TCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAAC                                                 <  SRR4302533.61772/94‑1 (MQ=60)

                                              TCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAAC                                                 <  SRR4302533.3863796/94‑1 (MQ=60)

                                                AACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACAT                                               <  SRR4302533.4760507/94‑1 (MQ=60)

                                                AACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACAT                                               <  SRR4302533.3475978/94‑1 (MQ=60)

                                                  CGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGG                                             <  SRR4302533.4246707/94‑1 (MQ=60)

                                                  CGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGG                                             <  SRR4302533.311272/94‑1 (MQ=60)

                                                   GGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGC                                            <  SRR4302533.665541/94‑1 (MQ=60)

                                                   GGGCCCAGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGC                                            <  SRR4302533.5891205/94‑1 (MQ=60)

                                                    GGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCGCGGGAATGGCTGATTCTGAACATGGCG                                           <  SRR4302533.2375320/94‑1 (MQ=60)

                                                      CCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGG                                         <  SRR4302533.2673290/94‑1 (MQ=60)

                                                      CCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGG                                         >  SRR4302533.380806/1‑94 (MQ=60)

                                                        CTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC                                       >  SRR4302533.4584103/1‑94 (MQ=60)

                                                        CTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC                                       >  SRR4302533.4176805/1‑94 (MQ=60)

                                                          GAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTG                                     >  SRR4302533.2745197/1‑94 (MQ=60)

                                                          GAAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTG                                     <  SRR4302533.3162992/94‑1 (MQ=60)

                                                           AAAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGG                                    >  SRR4302533.1086955/1‑94 (MQ=60)

                                                            AAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCGGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGA                                   <  SRR4302533.3413227/94‑1 (MQ=60)

                                                            AAACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGA                                   <  SRR4302533.1518550/94‑1 (MQ=60)

                                                             AGCCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAG                                  <  SRR4302533.6050648/94‑1 (MQ=60)

                                                             AACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGTAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAG                                  <  SRR4302533.6050647/94‑1 (MQ=60)

                                                             AACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAG                                  <  SRR4302533.3212143/94‑1 (MQ=60)

                                                             AACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAG                                  <  SRR4302533.2124409/94‑1 (MQ=60)

                                                             AACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAG                                  <  SRR4302533.4600538/94‑1 (MQ=60)

                                                             AACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAG                                  <  SRR4302533.665903/94‑1 (MQ=60)

                                                              ACCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGC                                 <  SRR4302533.4363495/94‑1 (MQ=60)

                                                               CCCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCG                                <  SRR4302533.4685279/94‑1 (MQ=60)

                                                                CCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGGCTGGAGCGT                               >  SRR4302533.5998953/1‑94 (MQ=60)

                                                                CCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGGCTGGAGCGT                               >  SRR4302533.5651305/1‑94 (MQ=60)

                                                                CCTGGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGG                               >  SRR4302533.3257393/1‑94 (MQ=60)

                                                                   GGACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAA                            <  SRR4302533.1285909/94‑1 (MQ=60)

                                                                    GACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAG                           >  SRR4302533.4237650/1‑94 (MQ=60)

                                                                     ACCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGA                          <  SRR4302533.4497942/94‑1 (MQ=60)

                                                                      CCGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAA                         >  SRR4302533.2182599/1‑94 (MQ=60)

                                                                       CGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAAT                        >  SRR4302533.3478628/1‑94 (MQ=60)

                                                                       CGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAAT                        <  SRR4302533.590040/94‑1 (MQ=60)

                                                                       CGCCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAAT                        <  SRR4302533.4175976/94‑1 (MQ=60)

                                                                         GCATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTC                      <  SRR4302533.2052980/94‑1 (MQ=60)

                                                                          CATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGccgggagggaggagcattca                     >  SRR4302533.5466535/1‑74 (MQ=60)

                                                                          CATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCC                     >  SRR4302533.2238931/1‑94 (MQ=60)

                                                                          CATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCC                     <  SRR4302533.5681266/94‑1 (MQ=60)

                                                                           ATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCG                    >  SRR4302533.5989577/1‑94 (MQ=60)

                                                                           ATCTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCG                    >  SRR4302533.2850617/1‑94 (MQ=60)

                                                                             CTTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGG                  >  SRR4302533.2945057/1‑94 (MQ=60)

                                                                              TTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGGGTGAAGAATTCCGGGT                 >  SRR4302533.4385165/1‑94 (MQ=60)

                                                                              TTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGT                 >  SRR4302533.2868619/1‑94 (MQ=60)

                                                                              TTCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGG                 >  SRR4302533.5425358/1‑94 (MQ=60)

                                                                               TCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTG                <  SRR4302533.1863075/94‑1 (MQ=60)

                                                                               TCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTG                <  SRR4302533.3742664/94‑1 (MQ=60)

                                                                               TCATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTG                <  SRR4302533.4725163/94‑1 (MQ=60)

                                                                                CATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGGGTGAAGAATTCCGGGTGC               >  SRR4302533.1454763/1‑94 (MQ=60)

                                                                                CATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGC               >  SRR4302533.3251628/1‑94 (MQ=60)

                                                                                 ATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCT              >  SRR4302533.3691433/1‑94 (MQ=60)

                                                                                 ATGAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCT              >  SRR4302533.4455002/1‑94 (MQ=60)

                                                                                   GAACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGCGCGTGACGAATTCCGGGCGCTGT            >  SRR4302533.3039987/1‑94 (MQ=60)

                                                                                    AACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTA           >  SRR4302533.1577075/1‑94 (MQ=60)

                                                                                     ACCCGGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTAT          >  SRR4302533.1885888/1‑94 (MQ=60)

                                                                                         GGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGA      >  SRR4302533.1687571/1‑94 (MQ=60)

                                                                                         GGCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGA      >  SRR4302533.1874989/1‑94 (MQ=60)

                                                                                          GCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAA     <  SRR4302533.3592230/94‑1 (MQ=60)

                                                                                          GCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAA     <  SRR4302533.2758972/94‑1 (MQ=60)

                                                                                          GCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAA     >  SRR4302533.236676/1‑94 (MQ=60)

                                                                                          GCGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAA     <  SRR4302533.2442086/94‑1 (MQ=60)

                                                                                           CGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAAC    <  SRR4302533.433036/94‑1 (MQ=60)

                                                                                           CGCGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGGGCTGTATCTGAAC    >  SRR4302533.790407/1‑94 (MQ=60)

                                                                                             CGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAA  >  SRR4302533.547878/1‑94 (MQ=60)

GAAGGTAAAGTAGAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGACCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGACTGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAA  >  NC_000913/2074310‑2074496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`