Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,075,662	A→G	I24M (ATA→ATG)	yeeV →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,075,662	0	A	G	100.0%	782.3 / NA	238	I24M (ATA→ATG)	yeeV	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (121/117); total (121/117)

Only 100 of 247 total aligned reads displayed.

TATCAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGA  >  NC_000913/2075572‑2075751

    aGGAAAATCTTCAGTATGAAAACATTGCGTGTATTCCCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGctgctg                                                                                     <  2:1564467/93‑1 (MQ=255)

    aGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGctgctg                                                                                     >  1:6066261/1‑93 (MQ=255)

    aGGAAAANCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCCCCCGTCTCCTGTTGAAATCTGGCAGATGctgctg                                                                                     >  1:3553269/1‑93 (MQ=255)

     ggAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGt                                                                                    >  2:5078871/1‑93 (MQ=255)

         aaTCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCg                                                                                >  1:2054831/1‑93 (MQ=255)

           tCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTTCTGTCCCGAc                                                                              >  1:3131056/1‑93 (MQ=255)

           tCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGAc                                                                              <  2:2343200/93‑1 (MQ=255)

           tCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGAc                                                                              <  2:3375646/93‑1 (MQ=255)

           tCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGAc                                                                              <  1:5340213/93‑1 (MQ=255)

             ttCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGATGTCCCGActg                                                                            >  1:2759107/1‑93 (MQ=255)

              tCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGActgc                                                                           <  1:2125391/93‑1 (MQ=255)

                aGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGActgctg                                                                         >  1:5615786/1‑93 (MQ=255)

                aGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGActgctg                                                                         <  1:2351341/93‑1 (MQ=255)

                aGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGActgctg                                                                         <  2:6127719/93‑1 (MQ=255)

                aGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGActgctg                                                                         <  2:5276533/93‑1 (MQ=255)

                 gTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTgg                                                                        >  2:3058462/1‑93 (MQ=255)

                     gAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCa                                                                    <  1:692773/93‑1 (MQ=255)

                     gAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCa                                                                    >  1:1082404/1‑93 (MQ=255)

                        aaCATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCa                                                                 >  1:5542193/1‑93 (MQ=255)

                        aaCATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCa                                                                 >  2:3843914/1‑93 (MQ=255)

                        aaCATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCa                                                                 <  2:5780054/93‑1 (MQ=255)

                        aaCATTACCAGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCa                                                                 >  1:2026293/1‑93 (MQ=255)

                          cATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACt                                                               <  1:4688579/93‑1 (MQ=255)

                          cATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACt                                                               >  2:323738/1‑93 (MQ=255)

                          cATTACCTGTATTACCCGGGCAGGCGCCCAGTTCTCGCCCGTCTCCTGTTGAAATCTCGCAGCTGCTGCTGTCCCGCCTGCTGGACCATCACt                                                               >  2:3737108/1‑93 (MQ=255)

                           aTTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTa                                                              <  1:1466769/93‑1 (MQ=255)

                           aTTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTa                                                              >  2:2857746/1‑93 (MQ=255)

                           aTTACCTGTATTACCCGGGAAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCACGACTGCTGGACCAGCACTa                                                              >  1:3197569/1‑93 (MQ=255)

                            ttACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTAt                                                             <  2:4637887/93‑1 (MQ=255)

                             tACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATg                                                            <  2:4996184/93‑1 (MQ=255)

                              aCCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATgc                                                           >  1:3008414/1‑92 (MQ=255)

                                cTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGcc                                                         >  1:3091048/1‑93 (MQ=255)

                                cTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGcc                                                         >  1:1873956/1‑93 (MQ=255)

                                cTGTATTACCCGGGCA‑GCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCt                                                        <  2:3894962/93‑1 (MQ=255)

                                 tGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCt                                                        >  2:2678759/1‑93 (MQ=255)

                                 tGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCt                                                        >  1:24957/1‑93 (MQ=255)

                                    aTTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTcac                                                     <  1:5268977/93‑1 (MQ=255)

                                     ttACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTcaca                                                    <  1:166228/93‑1 (MQ=255)

                                      tACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCacac                                                   >  2:6024083/1‑93 (MQ=255)

                                      tACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCacac                                                   >  2:2120853/1‑93 (MQ=255)

                                       aCCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACt                                                  <  1:5767809/93‑1 (MQ=255)

                                       aCCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACt                                                  <  1:6018346/93‑1 (MQ=255)

                                         ccGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGa                                                <  2:297973/93‑1 (MQ=255)

                                         ccGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGa                                                <  1:5771557/93‑1 (MQ=255)

                                         ccGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGa                                                >  1:1828215/1‑93 (MQ=255)

                                          cGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGaa                                               >  2:1634965/1‑93 (MQ=255)

                                          cGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGaa                                               <  1:2445377/93‑1 (MQ=255)

                                           gggCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAAt                                              >  2:6289001/1‑93 (MQ=255)

                                           gggCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAAt                                              <  1:434507/93‑1 (MQ=255)

                                             gCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGa                                            <  1:954456/93‑1 (MQ=255)

                                              cAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGac                                           <  2:447963/93‑1 (MQ=255)

                                              cAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGac                                           <  2:1672425/93‑1 (MQ=255)

                                              cAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGac                                           >  2:1248906/1‑93 (MQ=255)

                                              cAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGac                                           <  1:508854/93‑1 (MQ=255)

                                                 gcggcCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGacaca                                        >  2:1384150/1‑93 (MQ=255)

                                                  cggcCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGacacac                                       <  1:3634915/93‑1 (MQ=255)

                                                      cAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCttt                                   >  1:4166353/1‑93 (MQ=255)

                                                       aGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCtttt                                  <  2:2044333/93‑1 (MQ=255)

                                                        gTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTg                                 >  2:3571129/1‑93 (MQ=255)

                                                         ttCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGc                                >  2:5477487/1‑93 (MQ=255)

                                                          tcgcGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGcc                               <  2:6248975/90‑1 (MQ=255)

                                                            tcGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGa                             <  1:992019/93‑1 (MQ=255)

                                                             cGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACCCCTTTTGCCGAt                            <  2:833876/93‑1 (MQ=255)

                                                             cGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGAt                            <  1:311194/93‑1 (MQ=255)

                                                              gCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATg                           <  1:1397963/93‑1 (MQ=255)

                                                              gCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATg                           <  1:2485306/93‑1 (MQ=255)

                                                              gCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACCATGGCCTCACACTGAATGACACACCTTTTGCCGATg                           <  1:2649285/93‑1 (MQ=255)

                                                               cccGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGa                          >  2:1853904/1‑93 (MQ=255)

                                                                ccGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGaa                         <  1:1993013/93‑1 (MQ=255)

                                                                ccGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGaa                         <  1:2231237/93‑1 (MQ=255)

                                                                  gTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACg                       >  2:5834579/1‑93 (MQ=255)

                                                                   tctcCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGCACgc                      >  1:3312944/1‑92 (MQ=255)

                                                                   tctcCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACgt                      >  1:5909530/1‑93 (MQ=255)

                                                                    ctcCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACgtg                     >  1:6189868/1‑93 (MQ=255)

                                                                       cTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGa                  >  1:4026157/1‑93 (MQ=255)

                                                                       cTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGa                  >  2:4796011/1‑93 (MQ=255)

                                                                        tGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGAt                 >  2:5557760/1‑93 (MQ=255)

                                                                        tGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGAt                 >  2:1421948/1‑93 (MQ=255)

                                                                        tGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGAt                 >  1:5134450/1‑93 (MQ=255)

                                                                         gTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGAtt                <  1:4424331/93‑1 (MQ=255)

                                                                         gTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGAtt                >  2:5224537/1‑93 (MQ=255)

                                                                          ttGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTg               <  1:6272258/93‑1 (MQ=255)

                                                                           tGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGa              <  2:4149480/93‑1 (MQ=255)

                                                                           tGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGa              <  1:1261241/93‑1 (MQ=255)

                                                                             aaaTCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGagc            <  2:3188720/93‑1 (MQ=255)

                                                                             aaaTCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAAGGACACACCTTTTGCCGATGAACGTGTGATTGagc            <  1:1050601/93‑1 (MQ=255)

                                                                                tCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGagcagc         <  2:5913951/93‑1 (MQ=255)

                                                                                 cTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAgcagca        <  2:4679334/93‑1 (MQ=255)

                                                                                 cTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAgcagca        <  1:3437008/93‑1 (MQ=255)

                                                                                 cTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAgcagca        <  1:3703169/93‑1 (MQ=255)

                                                                                 cTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAgcagca        >  1:4056913/1‑93 (MQ=255)

                                                                                   ggCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGTCCTCACACTGAATGACACTCCTTTTGCCGATGAACGTGTGATTGAGCAGCata      <  2:801337/93‑1 (MQ=255)

                                                                                   ggCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCata      >  1:5941526/1‑93 (MQ=255)

                                                                                    gCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCatat     <  2:5059984/93‑1 (MQ=255)

                                                                                      aGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTg   >  2:5946272/1‑93 (MQ=255)

                                                                                      aGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTg   <  2:1947105/93‑1 (MQ=255)

                                                                                      aGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCCATGAACGTGTGATTGAGCAGCATATTg   >  2:2544125/1‑93 (MQ=255)

                                                                                       gATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGa  <  1:4795787/93‑1 (MQ=255)

                                                                                       gATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGa  <  1:163361/93‑1 (MQ=255)

                                                                                       gATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGa  >  2:2410133/1‑93 (MQ=255)

TATCAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGA  >  NC_000913/2075572‑2075751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCATATCAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGAGGCA  >  NC_000913/2075569‑2075755

GCATATCAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATG                                                                                               >  SRR4302533.6187492/1‑94 (MQ=60)

  ATATCAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCT                                                                                             <  SRR4302533.2738038/94‑1 (MQ=60)

  ATATCAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCT                                                                                             <  SRR4302533.2679634/94‑1 (MQ=60)

   TATCAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTG                                                                                            <  SRR4302533.1069639/94‑1 (MQ=60)

   TATCAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGAGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTG                                                                                            >  SRR4302533.4175097/1‑94 (MQ=60)

    ATCAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGC                                                                                           >  SRR4302533.472774/1‑94 (MQ=60)

    ATCAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGC                                                                                           >  SRR4302533.4551495/1‑94 (MQ=60)

    ATCAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGC                                                                                           >  SRR4302533.259426/1‑94 (MQ=60)

      CAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTG                                                                                         >  SRR4302533.6102975/1‑94 (MQ=60)

      CAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTG                                                                                         >  SRR4302533.4573861/1‑94 (MQ=60)

      CAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTG                                                                                         >  SRR4302533.2998009/1‑94 (MQ=60)

      CAGGAAAANCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCCCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTG                                                                                         >  SRR4302533.3575154/1‑94 (MQ=60)

       AGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGT                                                                                        >  SRR4302533.6005976/1‑94 (MQ=60)

       AGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGT                                                                                        >  SRR4302533.595123/1‑94 (MQ=60)

       AGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGT                                                                                        >  SRR4302533.4070112/1‑94 (MQ=60)

          AAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCC                                                                                     <  SRR4302533.590173/94‑1 (MQ=60)

           AAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCG                                                                                    >  SRR4302533.2067506/1‑94 (MQ=60)

             ATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTTCTGTCCCGAC                                                                                  >  SRR4302533.3150308/1‑94 (MQ=60)

             ATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGAC                                                                                  <  SRR4302533.1664648/94‑1 (MQ=60)

              TCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACT                                                                                 <  SRR4302533.5372237/94‑1 (MQ=60)

              TCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACT                                                                                 >  SRR4302533.1638677/1‑94 (MQ=60)

              TCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACT                                                                                 <  SRR4302533.1854387/94‑1 (MQ=60)

               CTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTG                                                                                >  SRR4302533.5806253/1‑94 (MQ=60)

               CTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTG                                                                                <  SRR4302533.6283233/94‑1 (MQ=60)

               CTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGATGTCCCGACTG                                                                                >  SRR4302533.2776019/1‑94 (MQ=60)

                TTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGC                                                                               >  SRR4302533.3298580/1‑94 (MQ=60)

                 TCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCT                                                                              <  SRR4302533.2138495/94‑1 (MQ=60)

                  CAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTG                                                                             >  SRR4302533.5649733/1‑94 (MQ=60)

                  CAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTG                                                                             <  SRR4302533.4873105/94‑1 (MQ=60)

                  CAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGGCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTG                                                                             <  SRR4302533.4265492/94‑1 (MQ=60)

                   AGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGG                                                                            <  SRR4302533.2365887/94‑1 (MQ=60)

                    GTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGA                                                                           >  SRR4302533.3852017/1‑94 (MQ=60)

                    GTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGA                                                                           >  SRR4302533.6343340/1‑94 (MQ=60)

                    GTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGA                                                                           <  SRR4302533.2154158/94‑1 (MQ=60)

                       TGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCA                                                                        >  SRR4302533.1088790/1‑94 (MQ=60)

                       TGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCA                                                                        >  SRR4302533.5723193/1‑94 (MQ=60)

                        GAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAG                                                                       <  SRR4302533.6215287/94‑1 (MQ=60)

                        GAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAG                                                                       <  SRR4302533.696864/94‑1 (MQ=60)

                         AAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGC                                                                      <  SRR4302533.205991/94‑1 (MQ=60)

                          AAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCA                                                                     >  SRR4302533.5788475/1‑94 (MQ=60)

                          AAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCA                                                                     >  SRR4302533.5575666/1‑94 (MQ=60)

                          AAACATTACCAGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCA                                                                     >  SRR4302533.2038804/1‑94 (MQ=60)

                            ACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACT                                                                   <  SRR4302533.311322/94‑1 (MQ=60)

                             CATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTA                                                                  <  SRR4302533.1723012/94‑1 (MQ=60)

                             CATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTA                                                                  <  SRR4302533.4717001/94‑1 (MQ=60)

                             CATTACCTGTATTACCCGGGAAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCACGACTGCTGGACCAGCACTA                                                                  >  SRR4302533.3217248/1‑94 (MQ=60)

                              ATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTAT                                                                 <  SRR4302533.1475614/94‑1 (MQ=60)

                              ATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTAT                                                                 <  SRR4302533.2766012/94‑1 (MQ=60)

                                TACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGC                                                               >  SRR4302533.3026818/1‑94 (MQ=60)

                                 ACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGC                                                              >  SRR4302533.5222192/1‑94 (MQ=60)

                                  CCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCC                                                             >  SRR4302533.3110052/1‑94 (MQ=60)

                                  CCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCC                                                             >  SRR4302533.1885376/1‑94 (MQ=60)

                                   CTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCT                                                            >  SRR4302533.25123/1‑94 (MQ=60)

                                    TGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTC                                                           >  SRR4302533.4436466/1‑94 (MQ=60)

                                    TGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTC                                                           >  SRR4302533.1431250/1‑94 (MQ=60)

                                     GTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCA                                                          >  SRR4302533.2472268/1‑94 (MQ=60)

                                       ATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACA                                                        <  SRR4302533.5300582/94‑1 (MQ=60)

                                        TTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACAC                                                       <  SRR4302533.167282/94‑1 (MQ=60)

                                         TACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACT                                                      <  SRR4302533.1383922/94‑1 (MQ=60)

                                         TACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACT                                                      <  SRR4302533.1521264/94‑1 (MQ=60)

                                          ACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTG                                                     <  SRR4302533.5802628/94‑1 (MQ=60)

                                          ACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTG                                                     <  SRR4302533.3027694/94‑1 (MQ=60)

                                          ACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTG                                                     <  SRR4302533.6054816/94‑1 (MQ=60)

                                           CCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGA                                                    >  SRR4302533.1839377/1‑94 (MQ=60)

                                            CCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAA                                                   <  SRR4302533.5806408/94‑1 (MQ=60)

                                             CGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAAT                                                  <  SRR4302533.2460472/94‑1 (MQ=60)

                                             CGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAAT                                                  <  SRR4302533.2340483/94‑1 (MQ=60)

                                             CGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAAT                                                  >  SRR4302533.6102875/1‑94 (MQ=60)

                                             CGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAAT                                                  >  SRR4302533.2549535/1‑94 (MQ=60)

                                              GGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATG                                                 >  SRR4302533.2121148/1‑94 (MQ=60)

                                              GGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATG                                                 >  SRR4302533.2139528/1‑94 (MQ=60)

                                              GGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATG                                                 <  SRR4302533.437096/94‑1 (MQ=60)

                                                GCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGAC                                               <  SRR4302533.960061/94‑1 (MQ=60)

                                                 CAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACA                                              >  SRR4302533.4154146/1‑94 (MQ=60)

                                                 CAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACA                                              <  SRR4302533.511874/94‑1 (MQ=60)

                                                  AGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACAC                                             >  SRR4302533.6221447/1‑94 (MQ=60)

                                                  AGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACAC                                             <  SRR4302533.3150111/94‑1 (MQ=60)

                                                     CGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACC                                          >  SRR4302533.3440210/1‑94 (MQ=60)

                                                     CGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACC                                          <  SRR4302533.3657270/94‑1 (MQ=60)

                                                     CGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACC                                          <  SRR4302533.3657269/94‑1 (MQ=60)

                                                      GGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCT                                         <  SRR4302533.351702/94‑1 (MQ=60)

                                                       GCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTT                                        <  SRR4302533.5177778/94‑1 (MQ=60)

                                                        CCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTT                                       >  SRR4302533.4191598/1‑94 (MQ=60)

                                                         CAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCTGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACCCCTTTT                                      <  SRR4302533.2397098/94‑1 (MQ=60)

                                                         CAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTT                                      >  SRR4302533.5606802/1‑94 (MQ=60)

                                                          AGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTG                                     <  SRR4302533.5562005/94‑1 (MQ=60)

                                                               TCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGAT                                <  SRR4302533.5859999/94‑1 (MQ=60)

                                                               TCGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGAT                                <  SRR4302533.997817/94‑1 (MQ=60)

                                                                CGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATG                               <  SRR4302533.313099/94‑1 (MQ=60)

                                                                CGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATG                               >  SRR4302533.2065677/1‑94 (MQ=60)

                                                                CGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATG                               <  SRR4302533.3618993/94‑1 (MQ=60)

                                                                CGCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATG                               >  SRR4302533.1926760/1‑94 (MQ=60)

                                                                 GCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGA                              <  SRR4302533.2500619/94‑1 (MQ=60)

                                                                 GCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGA                              <  SRR4302533.1406390/94‑1 (MQ=60)

                                                                 GCCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACCATGGCCTCACACTGAATGACACACCTTTTGCCGATGA                              <  SRR4302533.2665560/94‑1 (MQ=60)

                                                                  CCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAA                             <  SRR4302533.297699/94‑1 (MQ=60)

                                                                  CCCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAA                             <  SRR4302533.4886269/94‑1 (MQ=60)

                                                                   CCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAAC                            <  SRR4302533.2245004/94‑1 (MQ=60)

                                                                   CCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAAC                            <  SRR4302533.2005237/94‑1 (MQ=60)

                                                                   CCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAAC                            <  SRR4302533.3155941/94‑1 (MQ=60)

                                                                   CCGTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAAC                            <  SRR4302533.3922029/94‑1 (MQ=60)

                                                                     gtgttCTGTTGCAATCAGGCAGATGCTGCTGTCCCGACTGCCGGACCAGCACTATGGCCTCACTCTGAATGACACACCTTTTGCCGATGAACGT                          <  SRR4302533.466118/89‑1 (MQ=60)

                                                                     GTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGcacgc                          >  SRR4302533.3333400/1‑89 (MQ=60)

                                                                     GTCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGT                          >  SRR4302533.5945228/1‑94 (MQ=60)

                                                                      TCTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTG                         >  SRR4302533.6227013/1‑94 (MQ=60)

                                                                       CTCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGT                        >  SRR4302533.1942861/1‑94 (MQ=60)

                                                                        TCCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTG                       <  SRR4302533.532377/94‑1 (MQ=60)

                                                                         CCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGA                      <  SRR4302533.723737/94‑1 (MQ=60)

                                                                         CCTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGA                      >  SRR4302533.4050666/1‑94 (MQ=60)

                                                                          CTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGAT                     >  SRR4302533.5165470/1‑94 (MQ=60)

                                                                          CTGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGAT                     >  SRR4302533.2504840/1‑94 (MQ=60)

                                                                           TGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATT                    <  SRR4302533.3152057/94‑1 (MQ=60)

                                                                           TGTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATT                    >  SRR4302533.1136230/1‑94 (MQ=60)

                                                                            GTTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTG                   <  SRR4302533.4451075/94‑1 (MQ=60)

                                                                             TTGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGA                  <  SRR4302533.6309725/94‑1 (MQ=60)

                                                                              TGAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAG                 <  SRR4302533.1268783/94‑1 (MQ=60)

                                                                               GAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGC                >  SRR4302533.2008233/1‑94 (MQ=60)

                                                                               GAAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGC                <  SRR4302533.3361274/94‑1 (MQ=60)

                                                                                AAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCA               >  SRR4302533.3118691/1‑94 (MQ=60)

                                                                                AAATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAAGGACACACCTTTTGCCGATGAACGTGTGATTGAGCA               <  SRR4302533.1056778/94‑1 (MQ=60)

                                                                                 AATCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAG              <  SRR4302533.5164968/94‑1 (MQ=60)

                                                                                   TCTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCA            >  SRR4302533.4081610/1‑94 (MQ=60)

                                                                                    CTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCAT           <  SRR4302533.2387864/94‑1 (MQ=60)

                                                                                    CTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCAT           >  SRR4302533.3648709/1‑94 (MQ=60)

                                                                                    CTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCAT           <  SRR4302533.3725913/94‑1 (MQ=60)

                                                                                    CTGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCAT           <  SRR4302533.3458238/94‑1 (MQ=60)

                                                                                     TGGCAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATA          >  SRR4302533.5977456/1‑94 (MQ=60)

                                                                                        CAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTG       >  SRR4302533.5999352/1‑94 (MQ=60)

                                                                                        CAGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTG       >  SRR4302533.966111/1‑94 (MQ=60)

                                                                                        CAGATGCCGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACCCCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTG       <  SRR4302533.1708143/94‑1 (MQ=60)

                                                                                         AGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTTA      >  SRR4302533.5452389/1‑94 (MQ=60)

                                                                                         AGATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGA      >  SRR4302533.776044/1‑94 (MQ=60)

                                                                                          GATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGAG     <  SRR4302533.164401/94‑1 (MQ=60)

                                                                                          GATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGAG     <  SRR4302533.4824838/94‑1 (MQ=60)

                                                                                          GATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGAG     <  SRR4302533.1308542/94‑1 (MQ=60)

                                                                                          GATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGAG     >  SRR4302533.6009347/1‑94 (MQ=60)

                                                                                           ATGCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGAGG    <  SRR4302533.653900/94‑1 (MQ=60)

                                                                                             GCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGAGGCA  <  SRR4302533.6188720/94‑1 (MQ=60)

                                                                                             GCTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGAGGCA  <  SRR4302533.3359148/94‑1 (MQ=60)

GCATATCAGGAAAATCTTCAGTATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTCCCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTGAGGCA  >  NC_000913/2075569‑2075755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`