Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,106,960 |
T→C |
D216G (GAC→GGC) |
rfbX ← |
putative O‑antigen transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,106,960 | 0 | T | C | 99.5%
| 699.7
/ NA
| 218 | D216G (GAC→GGC) | rfbX | putative O‑antigen transporter |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (118/98); total (119/99) |
| Fisher's exact test for biased strand distribution p-value = 4.56e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 219 total aligned reads displayed.
ACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCA > NC_000913/2106871‑2107049
|
cGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGc > 2:5180822/1‑93 (MQ=255)
cGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGc < 1:3181282/93‑1 (MQ=255)
gTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCt > 1:2040850/1‑93 (MQ=255)
ttGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTa > 2:4146125/1‑93 (MQ=255)
ttGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTa > 1:4721516/1‑93 (MQ=255)
gTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAg > 1:1338513/1‑93 (MQ=255)
ccAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGAt < 1:919968/93‑1 (MQ=255)
ccAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGAt < 1:3715041/93‑1 (MQ=255)
cAGATATAAATCCCAGGATAATAGCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAATCCGCCTGCTAAAGATc < 2:5737366/93‑1 (MQ=255)
cAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATc < 1:1016862/93‑1 (MQ=255)
cAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATc < 1:5318593/93‑1 (MQ=255)
gATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGa < 1:4105390/93‑1 (MQ=255)
gATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGa < 1:2731750/93‑1 (MQ=255)
gATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGa > 1:279143/1‑93 (MQ=255)
gATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGa < 1:6072735/93‑1 (MQ=255)
atatAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGAc < 2:3188707/93‑1 (MQ=255)
ataAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCAACGc > 2:209694/1‑93 (MQ=255)
taAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGca < 2:126596/93‑1 (MQ=255)
taAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGca > 1:4693165/1‑93 (MQ=255)
taAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGca < 1:4786065/93‑1 (MQ=255)
aaaTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcac > 1:2396957/1‑93 (MQ=255)
aaaTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcac > 2:1900463/1‑93 (MQ=255)
aaTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcaca > 1:3363758/1‑93 (MQ=255)
aTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCTCAt < 2:2911031/93‑1 (MQ=255)
aTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACAt < 2:5775073/93‑1 (MQ=255)
tCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACAtt > 2:4399103/1‑93 (MQ=255)
cAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATg < 2:4366782/93‑1 (MQ=255)
aGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGt > 2:6295813/1‑93 (MQ=255)
ggATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTa < 1:2606478/93‑1 (MQ=255)
gATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTaa > 1:801715/1‑93 (MQ=255)
gATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTaa < 2:5580819/93‑1 (MQ=255)
ataataACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAAt > 2:5502168/1‑93 (MQ=255)
ataataACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAAt > 2:5210170/1‑93 (MQ=255)
taataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATg > 2:1602135/1‑93 (MQ=255)
aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGa > 2:6032539/1‑93 (MQ=255)
aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGa > 2:5292249/1‑93 (MQ=255)
ataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGAt < 1:1544136/93‑1 (MQ=255)
taaCTATTCCCGTAGAATATCAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATa > 1:148031/1‑93 (MQ=255)
taaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATa > 2:4569759/1‑93 (MQ=255)
taaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATa < 1:4985440/93‑1 (MQ=255)
aaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAg < 1:3921281/93‑1 (MQ=255)
aCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGc < 1:4313180/93‑1 (MQ=255)
cTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCg > 2:2589626/1‑93 (MQ=255)
cTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCg < 1:1830976/93‑1 (MQ=255)
cTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCg < 2:4862352/93‑1 (MQ=255)
tATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGt < 1:2381195/93‑1 (MQ=255)
cccGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACt < 1:3596988/93‑1 (MQ=255)
ccGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACtt < 1:3390315/93‑1 (MQ=255)
ccGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACtt < 1:3473079/93‑1 (MQ=255)
ccGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACtt > 2:5984087/1‑93 (MQ=255)
cGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACttt > 2:4273583/1‑93 (MQ=255)
cGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACttt > 2:2387547/1‑93 (MQ=255)
cGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACttt > 2:883710/1‑93 (MQ=255)
gTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTa > 2:1383818/1‑93 (MQ=255)
gAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCa > 2:3678390/1‑93 (MQ=255)
aaTATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCaa < 2:403474/93‑1 (MQ=255)
tataAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATc > 1:5549807/1‑93 (MQ=255)
ataAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATcc > 2:5679727/1‑93 (MQ=255)
taAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCa > 1:5896837/1‑93 (MQ=255)
taAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCa < 2:852643/93‑1 (MQ=255)
aaaCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCaa > 1:2952015/1‑93 (MQ=255)
aaaCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCaa > 2:2958031/1‑93 (MQ=255)
aCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAAcc > 1:1789740/1‑93 (MQ=255)
cTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCt < 1:719263/93‑1 (MQ=255)
cTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCt < 1:1856174/93‑1 (MQ=255)
tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt > 2:2060986/1‑93 (MQ=255)
tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt > 2:3074061/1‑93 (MQ=255)
aaTAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTc > 2:103595/1‑93 (MQ=255)
aaTAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTc > 2:1537234/1‑93 (MQ=255)
aTAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCa > 1:5628769/1‑93 (MQ=255)
gCAGATGTGGAAATAAAAACATGAAACCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGa < 1:4012312/93‑1 (MQ=255)
gCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGa > 1:4550878/1‑93 (MQ=255)
gCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGa > 2:3759370/1‑93 (MQ=255)
aGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaac > 2:1125844/1‑93 (MQ=255)
aGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaac < 2:329143/93‑1 (MQ=255)
gATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCACCCTTCATGcaca > 1:485791/1‑93 (MQ=255)
gATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaaca < 2:479279/93‑1 (MQ=255)
gATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaaca < 1:187462/93‑1 (MQ=255)
aTGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaa < 1:1248926/93‑1 (MQ=255)
gtgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACg > 1:1766013/1‑93 (MQ=255)
tgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGa > 1:4642490/1‑93 (MQ=255)
tgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGa < 2:3934831/93‑1 (MQ=255)
tgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGa < 1:2109196/93‑1 (MQ=255)
ggAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAt > 2:2739061/1‑93 (MQ=255)
ggAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAt > 1:4466866/1‑93 (MQ=255)
ggAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAt < 1:4165866/93‑1 (MQ=255)
ggAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAt > 2:1665437/1‑93 (MQ=255)
gAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATa > 1:5587011/1‑93 (MQ=255)
gAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATa < 1:2295695/93‑1 (MQ=255)
aaaTAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAg < 2:4955492/93‑1 (MQ=255)
tAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTa > 2:3891468/1‑93 (MQ=255)
aaaaCATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTGCCAATCCAACCTTCATGAACAACGATAGCTAGt < 2:4699852/93‑1 (MQ=255)
aaCATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGc < 1:1111373/93‑1 (MQ=255)
aaCATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGc < 1:5136606/93‑1 (MQ=255)
aaCATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGc < 1:5240368/93‑1 (MQ=255)
agaTGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCa > 2:2560975/3‑93 (MQ=255)
cATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaa > 2:1337339/1‑93 (MQ=255)
aaCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTc < 1:32091/93‑1 (MQ=255)
aaCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTc > 2:5075840/1‑93 (MQ=255)
ccGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCa > 2:1299925/1‑93 (MQ=255)
|
ACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCA > NC_000913/2106871‑2107049
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAA > NC_000913/2106867‑2107053
|
ACGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGC > SRR4302533.3390033/1‑94 (MQ=60)
ACGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGC > SRR4302533.3480683/1‑94 (MQ=60)
ACGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGC > SRR4302533.4701836/1‑94 (MQ=60)
CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCC < SRR4302533.4674049/94‑1 (MQ=60)
GGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCT < SRR4302533.2827028/94‑1 (MQ=60)
ACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGC < SRR4302533.2853876/94‑1 (MQ=60)
CGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCT > SRR4302533.2053428/1‑94 (MQ=60)
CGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCT < SRR4302533.3200853/94‑1 (MQ=60)
CGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCT < SRR4302533.156783/94‑1 (MQ=60)
GTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTA > SRR4302533.4750143/1‑94 (MQ=60)
GTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTA > SRR4302533.3655135/1‑94 (MQ=60)
GGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAG > SRR4302533.1346570/1‑94 (MQ=60)
GTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGA < SRR4302533.1318247/94‑1 (MQ=60)
TCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGAT > SRR4302533.3953209/1‑94 (MQ=60)
CCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATC < SRR4302533.3737847/94‑1 (MQ=60)
CCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATC < SRR4302533.816960/94‑1 (MQ=60)
CCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATC < SRR4302533.925371/94‑1 (MQ=60)
CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG < SRR4302533.1517069/94‑1 (MQ=60)
CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG < SRR4302533.5350467/94‑1 (MQ=60)
CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG < SRR4302533.4098011/94‑1 (MQ=60)
CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG < SRR4302533.1022839/94‑1 (MQ=60)
AGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGA > SRR4302533.280849/1‑94 (MQ=60)
AGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGA > SRR4302533.746568/1‑94 (MQ=60)
GATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGAC < SRR4302533.2748512/94‑1 (MQ=60)
GATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGAC < SRR4302533.4130358/94‑1 (MQ=60)
GATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGAC < SRR4302533.6109473/94‑1 (MQ=60)
ATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACG < SRR4302533.3335154/94‑1 (MQ=60)
ATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACG < SRR4302533.5345299/94‑1 (MQ=60)
TATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGC > SRR4302533.2778136/1‑94 (MQ=60)
ATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCA > SRR4302533.4721607/1‑94 (MQ=60)
ATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCA > SRR4302533.3567543/1‑94 (MQ=60)
ATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCA < SRR4302533.1830975/94‑1 (MQ=60)
TAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCAC > SRR4302533.2411753/1‑94 (MQ=60)
TAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCAC < SRR4302533.4815051/94‑1 (MQ=60)
TAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATCTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCAC < SRR4302533.3409181/94‑1 (MQ=60)
AAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACA > SRR4302533.3384541/1‑94 (MQ=60)
AATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACAT > SRR4302533.2098314/1‑94 (MQ=60)
TCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTA < SRR4302533.2255038/94‑1 (MQ=60)
CCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATG > SRR4302533.4459330/1‑94 (MQ=60)
CCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATG > SRR4302533.1053047/1‑94 (MQ=60)
CCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATG < SRR4302533.2561949/94‑1 (MQ=60)
AGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTA > SRR4302533.3482593/1‑94 (MQ=60)
GGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAA > SRR4302533.806428/1‑94 (MQ=60)
GGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAA < SRR4302533.2622487/94‑1 (MQ=60)
ATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATG < SRR4302533.2646353/94‑1 (MQ=60)
TAATGACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGA > SRR4302533.4575326/1‑94 (MQ=60)
TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGA > SRR4302533.6031787/1‑94 (MQ=60)
AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGAT > SRR4302533.1367301/1‑94 (MQ=60)
AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGAT > SRR4302533.5696897/1‑94 (MQ=60)
ATAACTATTCCCGTAGAATATCAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATA > SRR4302533.148978/1‑94 (MQ=60)
ATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATA < SRR4302533.1553436/94‑1 (MQ=60)
ATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATA < SRR4302533.5500662/94‑1 (MQ=60)
ATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATA > SRR4302533.4890752/1‑94 (MQ=60)
TAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAG < SRR4302533.5015668/94‑1 (MQ=60)
AACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGC < SRR4302533.1130112/94‑1 (MQ=60)
AACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGC < SRR4302533.3945227/94‑1 (MQ=60)
ACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCG < SRR4302533.4339146/94‑1 (MQ=60)
CTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGT > SRR4302533.1916723/1‑94 (MQ=60)
CTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGT < SRR4302533.1842152/94‑1 (MQ=60)
TATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTA < SRR4302533.2395923/94‑1 (MQ=60)
TATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTA < SRR4302533.3924541/94‑1 (MQ=60)
TCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACT > SRR4302533.4715594/1‑94 (MQ=60)
CCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTT < SRR4302533.4745674/94‑1 (MQ=60)
CCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTT < SRR4302533.3619121/94‑1 (MQ=60)
CCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTT < SRR4302533.1996520/94‑1 (MQ=60)
CCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTT < SRR4302533.3411252/94‑1 (MQ=60)
CCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTT < SRR4302533.3494510/94‑1 (MQ=60)
CCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTT > SRR4302533.261373/1‑94 (MQ=60)
GTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTAC > SRR4302533.5605994/1‑94 (MQ=60)
AGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCA > SRR4302533.236731/1‑94 (MQ=60)
GAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAA > SRR4302533.3361304/1‑94 (MQ=60)
GAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAA < SRR4302533.4462422/94‑1 (MQ=60)
ATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATC > SRR4302533.5583322/1‑94 (MQ=60)
ATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATC < SRR4302533.5454810/94‑1 (MQ=60)
ATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCA > SRR4302533.5932445/1‑94 (MQ=60)
TAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAA > SRR4302533.2970067/1‑94 (MQ=60)
AACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACC > SRR4302533.1873143/1‑94 (MQ=60)
AACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACC > SRR4302533.1800622/1‑94 (MQ=60)
ACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCT < SRR4302533.3920087/94‑1 (MQ=60)
CTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTT < SRR4302533.1867495/94‑1 (MQ=60)
CTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTT < SRR4302533.723507/94‑1 (MQ=60)
AATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCA > SRR4302533.5662805/1‑94 (MQ=60)
ATAGCAGATGTGGAAATAAAAACATGAAACCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCAT < SRR4302533.2407072/94‑1 (MQ=60)
ATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCAT < SRR4302533.5638097/94‑1 (MQ=60)
TAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATG < SRR4302533.4792199/94‑1 (MQ=60)
AGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGA > SRR4302533.4578476/1‑94 (MQ=60)
AGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGA > SRR4302533.1795803/1‑94 (MQ=60)
GCAGATGTGGAAATAAAAACATGAAACCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAA < SRR4302533.4036744/94‑1 (MQ=60)
CAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAAC < SRR4302533.6169934/94‑1 (MQ=60)
AGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCACCCTTCATGCACA > SRR4302533.488697/1‑94 (MQ=60)
GATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAA < SRR4302533.188628/94‑1 (MQ=60)
ATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC < SRR4302533.1256386/94‑1 (MQ=60)
ATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC > SRR4302533.3202761/1‑94 (MQ=60)
TGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACG > SRR4302533.1776766/1‑94 (MQ=60)
GTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGA > SRR4302533.4670617/1‑94 (MQ=60)
GTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGA > SRR4302533.4646578/1‑94 (MQ=60)
TGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAT < SRR4302533.2122208/94‑1 (MQ=60)
TGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAT < SRR4302533.5062325/94‑1 (MQ=60)
TGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAT > SRR4302533.4493880/1‑94 (MQ=60)
GGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATA < SRR4302533.4191109/94‑1 (MQ=60)
GGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATA > SRR4302533.5620767/1‑94 (MQ=60)
GAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAG < SRR4302533.2309912/94‑1 (MQ=60)
AAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGC > SRR4302533.4814638/1‑94 (MQ=60)
AAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGC < SRR4302533.689015/94‑1 (MQ=60)
AATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCT > SRR4302533.4233840/1‑94 (MQ=60)
AAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGT > SRR4302533.1573726/1‑94 (MQ=60)
AAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTG < SRR4302533.4164376/94‑1 (MQ=60)
AAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGC > SRR4302533.3033555/1‑94 (MQ=60)
AACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCA < SRR4302533.5271872/94‑1 (MQ=60)
AACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCA < SRR4302533.5167644/94‑1 (MQ=60)
AACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCA < SRR4302533.1117967/94‑1 (MQ=60)
TGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAA > SRR4302533.5239616/1‑94 (MQ=60)
AACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCC < SRR4302533.32311/94‑1 (MQ=60)
AACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCC > SRR4302533.4847894/1‑94 (MQ=60)
CCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAG < SRR4302533.1852884/94‑1 (MQ=60)
CGCCTGCTAAAGATCGACGCACATTATGTAATGATAGGGTAACTTTACCAATACAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGA > SRR4302533.2352717/1‑94 (MQ=60)
GCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCA > SRR4302533.2900495/1‑94 (MQ=60)
CCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAC > SRR4302533.2576674/1‑94 (MQ=60)
CCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAA > SRR4302533.4327686/1‑94 (MQ=60)
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ACGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAA > NC_000913/2106867‑2107053
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
