Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,106,960	T→C	D216G (GAC→GGC)	rfbX ←	putative O‑antigen transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,106,960	0	T	C	99.8%	1504.4 / NA	466	D216G (GAC→GGC)	rfbX	putative O‑antigen transporter
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (245/220); minor base G (0/1); total (245/221)
Fisher's exact test for biased strand distribution p-value = 4.74e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 470 total aligned reads displayed.

GACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCA  >  NC_000913/2106870‑2107049

gACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCt                                                                                         <  2:3082084/93‑1 (MQ=255)

gACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCt                                                                                         >  2:4768549/1‑93 (MQ=255)

gACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCt                                                                                         <  1:554919/93‑1 (MQ=255)

  cGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGc                                                                                       >  2:344092/1‑93 (MQ=255)

        tCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGTAAATAAAAACATGAAAACCGCCTGCTAAAGa                                                                                 >  1:2897176/1‑93 (MQ=255)

        tCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGa                                                                                 <  1:8065062/93‑1 (MQ=255)

          cAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAACCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATc                                                                               <  1:2822367/93‑1 (MQ=255)

          cAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACACGAAAACCGCCTGCTAAAGATc                                                                               <  1:1816745/93‑1 (MQ=255)

           aGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGACAACCGCCTGCTCAAGATCg                                                                              >  2:6595013/1‑93 (MQ=255)

           aGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCg                                                                              >  1:2255227/1‑93 (MQ=255)

           aGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACAGCCTGCTAAAGATCg                                                                              >  2:4382569/1‑93 (MQ=255)

            gATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGa                                                                             <  1:9918295/93‑1 (MQ=255)

            gATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGa                                                                             <  1:7336779/93‑1 (MQ=255)

              tataAATCCCAGGATAATAACTATTCCCGGAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAACACAGCCTGATAAAGATCCACg                                                                           >  2:4960182/1‑93 (MQ=255)

                 aaaTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcac                                                                        >  2:954576/1‑93 (MQ=255)

                 aaaTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcac                                                                        >  1:5159810/1‑93 (MQ=255)

                   aTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACAt                                                                      >  1:1920968/1‑93 (MQ=255)

                    tCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACAtt                                                                     >  2:16513/1‑93 (MQ=255)

                          gATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTaa                                                               <  2:1215248/93‑1 (MQ=255)

                           ataataACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAAt                                                              <  1:3750288/93‑1 (MQ=255)

                           ataataACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAAt                                                              <  1:8457060/93‑1 (MQ=255)

                           ataataACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAAt                                                              >  1:6321581/1‑93 (MQ=255)

                           ataataACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAAt                                                              >  1:2184062/1‑93 (MQ=255)

                            taataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAACCCGCCTGCTAAAGATCGACGCACATTATGTAATg                                                             <  2:7443455/93‑1 (MQ=255)

                             aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGa                                                            <  1:3264101/93‑1 (MQ=255)

                             aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGa                                                            <  2:5748689/93‑1 (MQ=255)

                             aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGa                                                            >  1:4561202/1‑93 (MQ=255)

                              ataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGAt                                                           >  2:8635901/1‑93 (MQ=255)

                              ataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGAt                                                           <  2:373210/93‑1 (MQ=255)

                               taaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATa                                                          <  1:3109783/93‑1 (MQ=255)

                               taaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATATAATGATa                                                          >  1:4704080/1‑93 (MQ=255)

                                agcTATTCCCGTAGAATATAGACTAATAGCAGATGTGGAAATAAGAACATGAGACCCTCCTGCTAAAGATCGACGCACATTATGTAATGATAg                                                         <  2:1406945/91‑1 (MQ=255)

                                aaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAg                                                         >  1:961728/1‑93 (MQ=255)

                                aaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAg                                                         >  2:2026806/1‑93 (MQ=255)

                                 aCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGc                                                        <  1:3410712/93‑1 (MQ=255)

                                  cTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCg                                                       >  1:8988551/1‑93 (MQ=255)

                                   tATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGt                                                      >  2:8307490/1‑93 (MQ=255)

                                    aTTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTa                                                     <  1:5372325/93‑1 (MQ=255)

                                    aTTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTa                                                     <  1:6155646/93‑1 (MQ=255)

                                    aTTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTa                                                     >  2:8080844/1‑93 (MQ=255)

                                     ttCCTGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTaa                                                    <  1:8637757/93‑1 (MQ=255)

                                     ttCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTaa                                                    >  1:9681135/1‑93 (MQ=255)

                                      tCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAAc                                                   >  2:762202/1‑93 (MQ=255)

                                        ccGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAAACGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACtt                                                 >  2:9314043/1‑93 (MQ=255)

                                         cGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTACTGATAGCGTAACttt                                                >  1:5986894/1‑93 (MQ=255)

                                         cGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACttt                                                >  2:6278425/1‑93 (MQ=255)

                                         cGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACttt                                                >  2:214249/1‑93 (MQ=255)

                                         cGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACttt                                                <  1:7886213/93‑1 (MQ=255)

                                         cGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACttt                                                <  1:3618070/93‑1 (MQ=255)

                                          gTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTa                                               >  1:2969439/1‑93 (MQ=255)

                                             gAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCa                                            >  2:8449316/1‑93 (MQ=255)

                                              aaTATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCaa                                           >  1:6529309/1‑93 (MQ=255)

                                              aaTATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCaa                                           <  1:4663157/93‑1 (MQ=255)

                                               atatAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAAt                                          >  1:497101/1‑93 (MQ=255)

                                                tataAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATc                                         >  2:24868/1‑93 (MQ=255)

                                                tataAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATc                                         <  2:869857/93‑1 (MQ=255)

                                                  taAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCa                                       >  1:1084290/1‑93 (MQ=255)

                                                  taAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTCACCAATCCa                                       <  2:9691353/93‑1 (MQ=255)

                                                   aaaCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCaa                                      <  1:1106535/93‑1 (MQ=255)

                                                   aaaCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCaa                                      <  1:8786261/93‑1 (MQ=255)

                                                    aaCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAAc                                     <  2:106864/93‑1 (MQ=255)

                                                       tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt                                  >  2:3306347/1‑93 (MQ=255)

                                                       tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt                                  >  2:2567991/1‑93 (MQ=255)

                                                       tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt                                  >  2:5499354/1‑93 (MQ=255)

                                                       tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTAACAATCCAACCtt                                  >  1:6635666/1‑93 (MQ=255)

                                                          tAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCAt                               <  1:9835237/93‑1 (MQ=255)

                                                          tAGAAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCAt                               >  2:9928555/1‑93 (MQ=255)

                                                            gCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGa                             <  1:5742164/93‑1 (MQ=255)

                                                            gCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGa                             >  1:451241/1‑93 (MQ=255)

                                                              aGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaac                           >  2:1827705/1‑93 (MQ=255)

                                                                aTGTGGAAATAAAAACAAGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaa                         <  1:1346668/93‑1 (MQ=255)

                                                                   tgGAAATAAAAACATGAAAACCGGCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGa                      <  2:6857589/93‑1 (MQ=255)

                                                                   tgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGa                      <  1:9491833/93‑1 (MQ=255)

                                                                    ggAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAt                     <  2:3912076/93‑1 (MQ=255)

                                                                    ggAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAt                     <  1:762933/93‑1 (MQ=255)

                                                                     gAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATa                    <  1:418658/93‑1 (MQ=255)

                                                                      aaaTAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAg                   >  1:1263379/1‑93 (MQ=255)

                                                                      aaaTAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAg                   <  2:5298224/93‑1 (MQ=255)

                                                                       aaTAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGc                  <  2:1923246/93‑1 (MQ=255)

                                                                        aTAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACGTTACCAATCCAACCTTCATGAACAACGATAGCt                 >  2:8946346/1‑93 (MQ=255)

                                                                         tAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTa                >  2:5035159/1‑93 (MQ=255)

                                                                         tAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTa                <  2:7358137/93‑1 (MQ=255)

                                                                         tAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTa                >  2:4558430/1‑93 (MQ=255)

                                                                          aaaaaCATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAg               >  1:7089615/1‑93 (MQ=255)

                                                                          aaaaaCATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAg               <  1:1441664/93‑1 (MQ=255)

                                                                          aaaaaCATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAg               >  2:2973319/1‑93 (MQ=255)

                                                                          aaaaaCATGAAAACCGCCTGCGAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAg               <  2:2756557/93‑1 (MQ=255)

                                                                           aaaaCATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGt              >  1:1642397/1‑93 (MQ=255)

                                                                            aaaCATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTg             >  2:6140519/1‑93 (MQ=255)

                                                                              aCATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCa           <  1:9333446/93‑1 (MQ=255)

                                                                               cATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaa          <  1:4753738/93‑1 (MQ=255)

                                                                               cATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaa          <  1:392194/93‑1 (MQ=255)

                                                                                 tGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaata        <  1:682039/93‑1 (MQ=255)

                                                                                  gAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaatat       >  1:2598349/1‑92 (MQ=255)

                                                                                    aaaCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAAtt     >  2:650485/1‑93 (MQ=255)

                                                                                     aaCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTc    >  1:5807349/1‑93 (MQ=255)

                                                                                     aaCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTc    >  1:7528924/1‑93 (MQ=255)

                                                                                      aCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTcc   <  1:2415941/93‑1 (MQ=255)

                                                                                       ccGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCa  <  2:7769026/93‑1 (MQ=255)

                                                                                       ccGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCa  >  1:8292052/1‑93 (MQ=255)

GACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCA  >  NC_000913/2106870‑2107049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 276 total aligned reads displayed.

ACGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAA  >  NC_000913/2106867‑2107053

ACGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGC                                                                                               >  SRR4302540.10102451/1‑94 (MQ=60)

 CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCC                                                                                              >  SRR4302540.3136246/1‑94 (MQ=60)

 CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCC                                                                                              <  SRR4302540.1064630/94‑1 (MQ=60)

 CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCC                                                                                              <  SRR4302540.8592222/94‑1 (MQ=60)

  GGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCT                                                                                             >  SRR4302540.7975842/1‑94 (MQ=60)

  GGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCT                                                                                             >  SRR4302540.5845717/1‑94 (MQ=60)

  GGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCT                                                                                             >  SRR4302540.1416027/1‑94 (MQ=60)

  GGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCT                                                                                             <  SRR4302540.3772638/94‑1 (MQ=60)

   GACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTG                                                                                            <  SRR4302540.4572589/94‑1 (MQ=60)

   GACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTG                                                                                            <  SRR4302540.5157847/94‑1 (MQ=60)

   GACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTG                                                                                            <  SRR4302540.560972/94‑1 (MQ=60)

     cgtggacCCAGATATAAATCCCAGGAGAAAAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCT                                                                                          <  SRR4302540.5056103/87‑1 (MQ=60)

     CGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCT                                                                                          <  SRR4302540.6802851/94‑1 (MQ=60)

      GTTGGTCCAGATATAAATCCCATGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTA                                                                                         >  SRR4302540.1774331/1‑94 (MQ=60)

      GTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTA                                                                                         >  SRR4302540.7656876/1‑94 (MQ=60)

      GTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTA                                                                                         <  SRR4302540.2948948/94‑1 (MQ=60)

       TTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAA                                                                                        <  SRR4302540.4192350/94‑1 (MQ=60)

       TTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAA                                                                                        <  SRR4302540.480263/94‑1 (MQ=60)

        TGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAA                                                                                       <  SRR4302540.2142282/94‑1 (MQ=60)

        TGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAA                                                                                       <  SRR4302540.7654638/94‑1 (MQ=60)

         GGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAG                                                                                      >  SRR4302540.7337649/1‑94 (MQ=60)

          GTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGTAAATAAAAACATGAAAACCGCCTGCTAAAGA                                                                                     >  SRR4302540.2928776/1‑94 (MQ=60)

          GTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGA                                                                                     <  SRR4302540.9004651/94‑1 (MQ=60)

          GTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGA                                                                                     >  SRR4302540.2234874/1‑94 (MQ=60)

           TCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGAT                                                                                    <  SRR4302540.8158659/94‑1 (MQ=60)

           TCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGAT                                                                                    <  SRR4302540.8791282/94‑1 (MQ=60)

            CCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATC                                                                                   <  SRR4302540.7000483/94‑1 (MQ=60)

            CCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATC                                                                                   <  SRR4302540.8427646/94‑1 (MQ=60)

            CCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATC                                                                                   >  SRR4302540.8874421/1‑94 (MQ=60)

             CAGATATGAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG                                                                                  >  SRR4302540.9958834/1‑94 (MQ=60)

             CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAACCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG                                                                                  <  SRR4302540.2852855/94‑1 (MQ=60)

             CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG                                                                                  >  SRR4302540.6416328/1‑94 (MQ=60)

             CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG                                                                                  <  SRR4302540.2855133/94‑1 (MQ=60)

             CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG                                                                                  >  SRR4302540.4712843/1‑94 (MQ=60)

             CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG                                                                                  >  SRR4302540.2279429/1‑94 (MQ=60)

             CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACACGAAAACCGCCTGCTAAAGATCG                                                                                  <  SRR4302540.1836590/94‑1 (MQ=60)

               GATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGAC                                                                                <  SRR4302540.10034122/94‑1 (MQ=60)

               GATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGAC                                                                                <  SRR4302540.2531565/94‑1 (MQ=60)

               GATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGAC                                                                                <  SRR4302540.7380821/94‑1 (MQ=60)

               GATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGAC                                                                                <  SRR4302540.7418661/94‑1 (MQ=60)

               GATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGAC                                                                                >  SRR4302540.9960937/1‑94 (MQ=60)

               GATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGAC                                                                                <  SRR4302540.1315306/94‑1 (MQ=60)

               GATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCCAC                                                                                >  SRR4302540.3174651/1‑94 (MQ=60)

                   TAAATCCCAGGATAATAACTATTCCCGTGGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCAC                                                                            >  SRR4302540.9615953/1‑94 (MQ=60)

                   TAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCAC                                                                            >  SRR4302540.9615954/1‑94 (MQ=60)

                   TAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCAC                                                                            >  SRR4302540.5215892/1‑94 (MQ=60)

                     AATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACAT                                                                          >  SRR4302540.1941920/1‑94 (MQ=60)

                     AATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACAT                                                                          >  SRR4302540.1554176/1‑94 (MQ=60)

                     AATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACAT                                                                          >  SRR4302540.582569/1‑94 (MQ=60)

                     AATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACAT                                                                          >  SRR4302540.5604960/1‑94 (MQ=60)

                     AATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACAT                                                                          <  SRR4302540.3039484/94‑1 (MQ=60)

                     AATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACAT                                                                          >  SRR4302540.154622/1‑94 (MQ=60)

                        gccaaGATAATAAGTATTCCCGTAGAATATAAACGAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTAT                                                                       <  SRR4302540.7288471/89‑1 (MQ=60)

                        CCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTAT                                                                       >  SRR4302540.4766534/1‑94 (MQ=60)

                        CCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTAT                                                                       <  SRR4302540.8441729/94‑1 (MQ=60)

                         CCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATG                                                                      >  SRR4302540.1306222/1‑94 (MQ=60)

                          CAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGT                                                                     <  SRR4302540.1265804/94‑1 (MQ=60)

                           AGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTA                                                                    >  SRR4302540.8668356/1‑94 (MQ=60)

                           AGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTA                                                                    <  SRR4302540.9792089/94‑1 (MQ=60)

                           AGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTA                                                                    <  SRR4302540.6043612/94‑1 (MQ=60)

                             GATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAAT                                                                  <  SRR4302540.5439924/94‑1 (MQ=60)

                             GATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAAT                                                                  >  SRR4302540.6391975/1‑94 (MQ=60)

                             GATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAAT                                                                  <  SRR4302540.8368628/94‑1 (MQ=60)

                              ATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATG                                                                 <  SRR4302540.3193131/94‑1 (MQ=60)

                              ATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATG                                                                 >  SRR4302540.5616350/1‑94 (MQ=60)

                              ATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATG                                                                 >  SRR4302540.3040471/1‑94 (MQ=60)

                              ATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATG                                                                 >  SRR4302540.6258179/1‑94 (MQ=60)

                              ATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATG                                                                 >  SRR4302540.775338/1‑94 (MQ=60)

                              ATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATG                                                                 <  SRR4302540.8555258/94‑1 (MQ=60)

                              ATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATG                                                                 <  SRR4302540.2226311/94‑1 (MQ=60)

                               TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGA                                                                >  SRR4302540.4610484/1‑94 (MQ=60)

                               TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGA                                                                >  SRR4302540.5363656/1‑94 (MQ=60)

                               TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGA                                                                <  SRR4302540.9929/94‑1 (MQ=60)

                               TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGA                                                                >  SRR4302540.3456320/1‑94 (MQ=60)

                                AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGAT                                                               <  SRR4302540.4747768/94‑1 (MQ=60)

                                AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGAT                                                               <  SRR4302540.403017/94‑1 (MQ=60)

                                AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGAT                                                               >  SRR4302540.7596863/1‑94 (MQ=60)

                                 ATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATA                                                              >  SRR4302540.231410/1‑94 (MQ=60)

                                 ATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATA                                                              >  SRR4302540.9715179/1‑94 (MQ=60)

                                  TAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAG                                                             <  SRR4302540.3143807/94‑1 (MQ=60)

                                  TAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAG                                                             >  SRR4302540.5876366/1‑94 (MQ=60)

                                  TAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAG                                                             <  SRR4302540.4594427/94‑1 (MQ=60)

                                  TAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAG                                                             <  SRR4302540.4539271/94‑1 (MQ=60)

                                  TAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAG                                                             >  SRR4302540.971677/1‑94 (MQ=60)

                                  TAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAG                                                             <  SRR4302540.5779090/94‑1 (MQ=60)

                                   AACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGC                                                            <  SRR4302540.1329764/94‑1 (MQ=60)

                                   AACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGC                                                            >  SRR4302540.3756240/1‑94 (MQ=60)

                                   AACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGC                                                            <  SRR4302540.3333465/94‑1 (MQ=60)

                                    ACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCG                                                           >  SRR4302540.9096053/1‑94 (MQ=60)

                                     CTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGT                                                          >  SRR4302540.3853444/1‑94 (MQ=60)

                                     CTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGT                                                          >  SRR4302540.3958613/1‑94 (MQ=60)

                                       ATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAA                                                        <  SRR4302540.6224226/94‑1 (MQ=60)

                                       ATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAA                                                        <  SRR4302540.6027807/94‑1 (MQ=60)

                                       ATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAA                                                        <  SRR4302540.5431383/94‑1 (MQ=60)

                                        TTCCTGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAAC                                                       <  SRR4302540.8738097/94‑1 (MQ=60)

                                        TTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAAC                                                       <  SRR4302540.2232804/94‑1 (MQ=60)

                                         TCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACT                                                      <  SRR4302540.9400877/94‑1 (MQ=60)

                                         TCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACT                                                      <  SRR4302540.2197385/94‑1 (MQ=60)

                                          CCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTT                                                     >  SRR4302540.6438518/1‑94 (MQ=60)

                                           CCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAACCATGAAAACCGCCGGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTT                                                    <  SRR4302540.3667362/94‑1 (MQ=60)

                                           CCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTACTGATAGCGTAACTTT                                                    >  SRR4302540.6053204/1‑94 (MQ=60)

                                           CCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTT                                                    >  SRR4302540.6053205/1‑94 (MQ=60)

                                           CCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTT                                                    <  SRR4302540.9947597/94‑1 (MQ=60)

                                           CCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTT                                                    >  SRR4302540.6684879/1‑94 (MQ=60)

                                            CGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTA                                                   >  SRR4302540.2754407/1‑94 (MQ=60)

                                            CGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTA                                                   >  SRR4302540.6610035/1‑94 (MQ=60)

                                            CGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTA                                                   >  SRR4302540.1108169/1‑94 (MQ=60)

                                            CGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTA                                                   <  SRR4302540.7978278/94‑1 (MQ=60)

                                            CGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTA                                                   <  SRR4302540.3657648/94‑1 (MQ=60)

                                             GTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTAC                                                  >  SRR4302540.50591/1‑94 (MQ=60)

                                             GTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTAC                                                  >  SRR4302540.5032362/1‑94 (MQ=60)

                                              TAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCTACGCACATTATGTAATGATAGCGTAACTTTACC                                                 >  SRR4302540.9830563/1‑94 (MQ=60)

                                              TAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACC                                                 >  SRR4302540.1129866/1‑94 (MQ=60)

                                               AGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATTGACGCACATTATGTAATGATAGCGTAACTTTACAA                                                >  SRR4302540.7836748/1‑94 (MQ=60)

                                                GAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAA                                               >  SRR4302540.6601808/1‑94 (MQ=60)

                                                GAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAA                                               <  SRR4302540.6537304/94‑1 (MQ=60)

                                                GAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAA                                               <  SRR4302540.10071499/94‑1 (MQ=60)

                                                GAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAA                                               >  SRR4302540.1701080/1‑94 (MQ=60)

                                                 AATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAAT                                              >  SRR4302540.502430/1‑94 (MQ=60)

                                                 AATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAAT                                              <  SRR4302540.4713072/94‑1 (MQ=60)

                                                  ATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAGCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATC                                             <  SRR4302540.6805307/94‑1 (MQ=60)

                                                  ATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATC                                             <  SRR4302540.6805306/94‑1 (MQ=60)

                                                  ATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATC                                             >  SRR4302540.1128639/1‑94 (MQ=60)

                                                   TATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCC                                            >  SRR4302540.4697357/1‑94 (MQ=60)

                                                   AATAAACTAATAGCAGATGTGGAAATAAAAACATGAAACCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCC                                            <  SRR4302540.1771319/94‑1 (MQ=60)

                                                    ATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCA                                           >  SRR4302540.1095408/1‑94 (MQ=60)

                                                    ATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCA                                           >  SRR4302540.2954087/1‑94 (MQ=60)

                                                     TAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAA                                          >  SRR4302540.4331378/1‑94 (MQ=60)

                                                      AAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAAC                                         <  SRR4302540.8200091/94‑1 (MQ=60)

                                                      AAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAAC                                         <  SRR4302540.1117955/94‑1 (MQ=60)

                                                        ACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCT                                       >  SRR4302540.4765763/1‑94 (MQ=60)

                                                        ACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGCAAGAATAGCGAACCTTTACCAATCCAACTT                                       >  SRR4302540.2860276/1‑94 (MQ=60)

                                                         CTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTAACAATCCAACCTT                                      >  SRR4302540.6709102/1‑94 (MQ=60)

                                                         CTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGAAAGCGTAACTTTACCAATCCAACCTT                                      >  SRR4302540.3032493/1‑94 (MQ=60)

                                                          TAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGATGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTC                                     >  SRR4302540.8335016/1‑94 (MQ=60)

                                                            ATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCAT                                   >  SRR4302540.3226515/1‑94 (MQ=60)

                                                             TAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATG                                  <  SRR4302540.6221631/94‑1 (MQ=60)

                                                             TAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATG                                  <  SRR4302540.4559740/94‑1 (MQ=60)

                                                              AGCAGATGTGGAAATAAAAACATGAAAGCCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGA                                 <  SRR4302540.911039/94‑1 (MQ=60)

                                                              AGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACCTTATGTAATGATAGCGTAACTTTACCAATCCACCCTTCATGA                                 >  SRR4302540.3760981/1‑94 (MQ=60)

                                                              AGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGA                                 <  SRR4302540.2483162/94‑1 (MQ=60)

                                                              AGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGA                                 >  SRR4302540.456048/1‑94 (MQ=60)

                                                              AGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGA                                 >  SRR4302540.456049/1‑94 (MQ=60)

                                                              AGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGA                                 <  SRR4302540.9342555/94‑1 (MQ=60)

                                                               GCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAA                                <  SRR4302540.5805462/94‑1 (MQ=60)

                                                                CAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAAC                               >  SRR4302540.9048003/1‑94 (MQ=60)

                                                                CAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAAC                               <  SRR4302540.2393651/94‑1 (MQ=60)

                                                                CAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAAC                               >  SRR4302540.947112/1‑94 (MQ=60)

                                                                CAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAAC                               >  SRR4302540.7669108/1‑94 (MQ=60)

                                                                 AGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACA                              <  SRR4302540.2961237/94‑1 (MQ=60)

                                                                  GATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAA                             <  SRR4302540.1548822/94‑1 (MQ=60)

                                                                   ATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC                            >  SRR4302540.2389624/1‑94 (MQ=60)

                                                                   ATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC                            <  SRR4302540.2913870/94‑1 (MQ=60)

                                                                   ATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC                            >  SRR4302540.6377732/1‑94 (MQ=60)

                                                                   ATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC                            >  SRR4302540.6377731/1‑94 (MQ=60)

                                                                   ATGTGGAAATAAAAACAAGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC                            <  SRR4302540.1360813/94‑1 (MQ=60)

                                                                    TGTGGAAATAAAAACATGAAAACCGCCTGCTTAAGCTCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAAgctcg                           >  SRR4302540.4875553/1‑89 (MQ=60)

                                                                    TGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACG                           >  SRR4302540.3431199/1‑94 (MQ=60)

                                                                    TGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACG                           >  SRR4302540.9739527/1‑94 (MQ=60)

                                                                    TGTGGAAATAAAAACATGAAAACCGCCTCGTAAAAATCGACGCACATTATGTAATGATAGCGTAACTTTAACACTCCAAACTTCATGAACAACG                           >  SRR4302540.4875552/1‑94 (MQ=60)

                                                                     GTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGA                          >  SRR4302540.4735444/1‑94 (MQ=60)

                                                                      TGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAT                         <  SRR4302540.9604344/94‑1 (MQ=60)

                                                                        GAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAG                       >  SRR4302540.1276351/1‑94 (MQ=60)

                                                                        GAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAG                       >  SRR4302540.1442926/1‑94 (MQ=60)

                                                                        GAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAG                       <  SRR4302540.7550297/94‑1 (MQ=60)

                                                                         AAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGC                      <  SRR4302540.8418309/94‑1 (MQ=60)

                                                                          AATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCT                     <  SRR4302540.8134802/94‑1 (MQ=60)

                                                                          AATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCT                     >  SRR4302540.8798636/1‑94 (MQ=60)

                                                                            TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                   <  SRR4302540.1883693/94‑1 (MQ=60)

                                                                            TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                   >  SRR4302540.7168505/1‑94 (MQ=60)

                                                                            TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                   <  SRR4302540.3569285/94‑1 (MQ=60)

                                                                            TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                   >  SRR4302540.4728453/1‑94 (MQ=60)

                                                                             AAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGT                  <  SRR4302540.10024237/94‑1 (MQ=60)

                                                                             AAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGT                  >  SRR4302540.8635030/1‑94 (MQ=60)

                                                                             AAAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGT                  <  SRR4302540.1457315/94‑1 (MQ=60)

                                                                              AAAACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTG                 <  SRR4302540.5286936/94‑1 (MQ=60)

                                                                                AACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCA               <  SRR4302540.3389940/94‑1 (MQ=60)

                                                                                AACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCA               >  SRR4302540.3891977/1‑94 (MQ=60)

                                                                                AACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCA               >  SRR4302540.4105821/1‑94 (MQ=60)

                                                                                AACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCA               >  SRR4302540.5852506/1‑94 (MQ=60)

                                                                                 ACATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAA              <  SRR4302540.9552629/94‑1 (MQ=60)

                                                                                  CATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAAT             <  SRR4302540.4804462/94‑1 (MQ=60)

                                                                                  CATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAAT             <  SRR4302540.898604/94‑1 (MQ=60)

                                                                                  CATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAAT             <  SRR4302540.396256/94‑1 (MQ=60)

                                                                                   ATGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATA            >  SRR4302540.2752734/1‑94 (MQ=60)

                                                                                    TGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAT           >  SRR4302540.2626368/1‑94 (MQ=60)

                                                                                    TGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAA           <  SRR4302540.689348/94‑1 (MQ=60)

                                                                                    TGAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAA           <  SRR4302540.689349/94‑1 (MQ=60)

                                                                                     GAAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAAT          >  SRR4302540.482994/1‑94 (MQ=60)

                                                                                      AAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATT         <  SRR4302540.2038005/94‑1 (MQ=60)

                                                                                      AAAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATT         >  SRR4302540.3607490/1‑94 (MQ=60)

                                                                                       AAACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTC        >  SRR4302540.7613196/1‑94 (MQ=60)

                                                                                        AACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCC       <  SRR4302540.9774515/94‑1 (MQ=60)

                                                                                        AACCGCCTGCTAAAGAACGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCC       <  SRR4302540.1930996/94‑1 (MQ=60)

                                                                                         ACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCA      >  SRR4302540.5457257/1‑94 (MQ=60)

                                                                                         ACCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCA      <  SRR4302540.2441974/94‑1 (MQ=60)

                                                                                          CCGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAG     >  SRR4302540.7895450/1‑94 (MQ=60)

                                                                                           CGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGC    <  SRR4302540.7137742/94‑1 (MQ=60)

                                                                                           CGCCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGC    <  SRR4302540.7137744/94‑1 (MQ=60)

                                                                                             CCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAA  <  SRR4302540.9431521/94‑1 (MQ=60)

ACGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAA  >  NC_000913/2106867‑2107053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`