Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,107,690 C→T W157* (TGG→TGA)  rfbC ← dTDP‑6‑deoxy‑D‑glucose‑3,5 epimerase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,107,6900CT100.0% 705.0 / NA 194W157* (TGG→TGA) rfbCdTDP‑6‑deoxy‑D‑glucose‑3,5 epimerase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (95/99);  total (95/99)

Only 100 of 201 total aligned reads displayed.

TATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGCCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGC  >  NC_000913/2107600‑2107779
                                                                                           |                                                                                         
 aTTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTcaa                                                                                        >  1:4326068/1‑93 (MQ=255)
 aTTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTcaa                                                                                        <  1:2737429/93‑1 (MQ=255)
 aTTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTcaa                                                                                        <  2:3727668/93‑1 (MQ=255)
  ttCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTcaat                                                                                       <  2:532709/93‑1 (MQ=255)
   tCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTcaatc                                                                                      <  1:5386733/93‑1 (MQ=255)
   tCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTcaatc                                                                                      >  1:2706765/1‑93 (MQ=255)
   tCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTcaatc                                                                                      >  1:1860536/1‑93 (MQ=255)
   tCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTcaatc                                                                                      <  2:4884352/93‑1 (MQ=255)
    cATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGCGTcaatca                                                                                     >  1:3327549/1‑93 (MQ=255)
     aTGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGtcaatcaa                                                                                    >  1:6073260/1‑93 (MQ=255)
      tGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTcaatcaat                                                                                   >  1:151216/1‑93 (MQ=255)
      tGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTcaatcaat                                                                                   >  1:839166/1‑93 (MQ=255)
      tGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTcaatcaat                                                                                   >  1:5934492/1‑93 (MQ=255)
       gCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAAtt                                                                                  <  2:5972873/93‑1 (MQ=255)
         aattaattTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGc                                                                                >  2:5110399/1‑93 (MQ=255)
         aattaattTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGc                                                                                >  2:3391882/1‑93 (MQ=255)
         aattaattTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGc                                                                                >  2:1157033/1‑93 (MQ=255)
         aattaattTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGc                                                                                >  1:4764164/1‑93 (MQ=255)
          attaattTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCa                                                                               >  2:13085/1‑93 (MQ=255)
           ttaattTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCaa                                                                              >  1:518549/1‑93 (MQ=255)
           ttaattTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCaa                                                                              >  1:2681761/1‑93 (MQ=255)
              attTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGc                                                                           <  2:1737655/93‑1 (MQ=255)
               ttttAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCg                                                                          <  1:4116828/93‑1 (MQ=255)
                tttAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGt                                                                         <  1:1332862/93‑1 (MQ=255)
                 ttAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGtt                                                                        <  2:2346356/93‑1 (MQ=255)
                   aaTCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTtca                                                                      >  1:5080255/1‑93 (MQ=255)
                   aaTCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTtca                                                                      <  1:1219360/93‑1 (MQ=255)
                    aTCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTtcat                                                                     >  2:683555/1‑93 (MQ=255)
                     tCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTtcatc                                                                    >  2:4371918/1‑93 (MQ=255)
                      cTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTtcatca                                                                   <  1:2514483/93‑1 (MQ=255)
                            aGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCaa                                                             >  2:1879375/1‑93 (MQ=255)
                             gCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAAc                                                            >  1:3489677/1‑93 (MQ=255)
                              cTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACa                                                           <  1:6220487/93‑1 (MQ=255)
                               tCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACat                                                          <  2:5890572/93‑1 (MQ=255)
                               tCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACat                                                          >  2:503584/1‑93 (MQ=255)
                               tCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACat                                                          >  2:3974880/1‑93 (MQ=255)
                                cATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACata                                                         >  1:3870039/1‑93 (MQ=255)
                                cATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACata                                                         <  1:5238308/93‑1 (MQ=255)
                                  tCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATAtt                                                       >  2:4725863/1‑93 (MQ=255)
                                  tCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATAtt                                                       <  1:3249036/93‑1 (MQ=255)
                                  tCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATAtt                                                       >  1:5887454/1‑93 (MQ=255)
                                   cTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTc                                                      >  1:1037460/1‑93 (MQ=255)
                                   cTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTc                                                      <  1:96638/93‑1 (MQ=255)
                                   cTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTc                                                      >  2:4633745/1‑93 (MQ=255)
                                    tAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTcc                                                     >  1:857762/1‑93 (MQ=255)
                                    tAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAA‑CCTGGTGTTTTGGGGCAAATCAATTCCAATGCTTCCTTATTTCAAACTTATTca                                                     >  1:3572137/1‑92 (MQ=255)
                                      aCGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCcac                                                   <  2:3684417/93‑1 (MQ=255)
                                      aCGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCcac                                                   <  1:3034159/93‑1 (MQ=255)
                                      aCGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCcac                                                   <  2:523560/93‑1 (MQ=255)
                                         tAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAAt                                                >  1:3415558/1‑93 (MQ=255)
                                         tAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAAt                                                >  2:3800462/1‑93 (MQ=255)
                                         tAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAAt                                                <  1:2489607/93‑1 (MQ=255)
                                          aaaGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATc                                               <  1:1731389/93‑1 (MQ=255)
                                           aaGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCTAACATATTCCACAAttg                                              >  2:3325884/1‑91 (MQ=255)
                                             gagCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCt                                            <  2:5188971/93‑1 (MQ=255)
                                             gagCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCt                                            >  2:2134970/1‑93 (MQ=255)
                                               gCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCttt                                          >  1:3273610/1‑93 (MQ=255)
                                               gCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCttt                                          <  2:2636995/93‑1 (MQ=255)
                                                ccTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTc                                         >  2:4089828/1‑93 (MQ=255)
                                                 cTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCa                                        <  1:5676397/93‑1 (MQ=255)
                                                  tttCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAg                                       <  2:3168703/93‑1 (MQ=255)
                                                  tttCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAg                                       <  2:5774071/93‑1 (MQ=255)
                                                  tttCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAg                                       <  2:272942/93‑1 (MQ=255)
                                                   ttCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAgg                                      >  1:2832428/1‑93 (MQ=255)
                                                    tCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGga                                     >  1:2041185/1‑93 (MQ=255)
                                                     cATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGgat                                    >  1:2287893/1‑93 (MQ=255)
                                                       tCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGgatga                                  >  2:3439043/1‑93 (MQ=255)
                                                        cTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGgatgat                                 <  2:4821651/93‑1 (MQ=255)
                                                        cTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGgatgat                                 <  1:3554832/93‑1 (MQ=255)
                                                        cTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGgatgat                                 <  2:5826008/93‑1 (MQ=255)
                                                         ttttGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGata                                <  1:3550620/93‑1 (MQ=255)
                                                         ttttGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGata                                >  2:2834810/1‑93 (MQ=255)
                                                          tttGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGataa                               <  1:4522408/93‑1 (MQ=255)
                                                           ttGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGataat                              <  2:2641303/93‑1 (MQ=255)
                                                           ttGGCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGataat                              >  1:6197728/1‑93 (MQ=255)
                                                             ggCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAg                            >  1:5586499/1‑93 (MQ=255)
                                                              gCGAAAGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGt                           <  1:4980381/93‑1 (MQ=255)
                                                                 aaaGGATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTg                        <  1:3451489/93‑1 (MQ=255)
                                                                     gATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGt                    >  2:3010800/1‑93 (MQ=255)
                                                                     gATTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGt                    <  1:5021362/93‑1 (MQ=255)
                                                                      aTTAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGtt                   >  2:1227107/1‑93 (MQ=255)
                                                                        tAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGtttt                 <  2:2541214/93‑1 (MQ=255)
                                                                        tAACCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGtttt                 >  2:1704323/1‑93 (MQ=255)
                                                                         aaCCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTta                >  2:307882/1‑93 (MQ=255)
                                                                          aCCCTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTtat               >  1:3705434/1‑93 (MQ=255)
                                                                           cccTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTtata              <  1:4053319/93‑1 (MQ=255)
                                                                             cTGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATAtt            >  1:1453692/1‑93 (MQ=255)
                                                                              tGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTg           >  2:2081419/1‑93 (MQ=255)
                                                                              tGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTg           >  1:1662244/1‑93 (MQ=255)
                                                                              tGATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTATTATATTg           >  1:2088516/1‑93 (MQ=255)
                                                                               gATG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGa          >  2:4860171/1‑93 (MQ=255)
                                                                                aTG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGaa         >  1:4211886/1‑93 (MQ=255)
                                                                                 tG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGaaa        >  2:4163350/1‑93 (MQ=255)
                                                                                 tG‑TTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGaaa        <  1:2649488/93‑1 (MQ=255)
                                                                                    tttGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAAtt      >  1:6241821/1‑93 (MQ=255)
                                                                                       ggggTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAg   <  1:4488598/93‑1 (MQ=255)
                                                                                        gggTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGc  <  2:1990083/93‑1 (MQ=255)
                                                                                        gggTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGc  <  1:4865289/93‑1 (MQ=255)
                                                                                        gggTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGc  <  1:2164061/93‑1 (MQ=255)
                                                                                        gggTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGc  <  2:3612819/93‑1 (MQ=255)
                                                                                           |                                                                                         
TATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATG‑TTTGGGGCCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGC  >  NC_000913/2107600‑2107779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCGTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGCCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCGATA  >  NC_000913/2107597‑2107783
                                                                                             |                                                                                             
TCGTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGT                                                                                               <  SRR4302533.6237400/94‑1 (MQ=60)
 CGTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTC                                                                                              >  SRR4302533.2578003/1‑94 (MQ=60)
  GTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCA                                                                                             <  SRR4302533.3481720/94‑1 (MQ=60)
  GTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCA                                                                                             >  SRR4302533.2771871/1‑94 (MQ=60)
   TATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAA                                                                                            >  SRR4302533.4352128/1‑94 (MQ=60)
   TATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAA                                                                                            >  SRR4302533.6272821/1‑94 (MQ=60)
    ATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAAT                                                                                           >  SRR4302533.2994736/1‑94 (MQ=60)
    ATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAAT                                                                                           <  SRR4302533.2754216/94‑1 (MQ=60)
     TTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATC                                                                                          >  SRR4302533.2723370/1‑94 (MQ=60)
     TTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATC                                                                                          >  SRR4302533.1871882/1‑94 (MQ=60)
      TCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCA                                                                                         >  SRR4302533.3373923/1‑94 (MQ=60)
      TCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCA                                                                                         >  SRR4302533.3461255/1‑94 (MQ=60)
      TCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCA                                                                                         <  SRR4302533.5419098/94‑1 (MQ=60)
      TCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGCGTCAATCA                                                                                         >  SRR4302533.3348112/1‑94 (MQ=60)
       CATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAA                                                                                        >  SRR4302533.6110000/1‑94 (MQ=60)
       CATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAA                                                                                        >  SRR4302533.4505058/1‑94 (MQ=60)
       CATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCATGATGTTTGGGGTCAATCAA                                                                                        >  SRR4302533.3118192/1‑94 (MQ=60)
        ATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAAT                                                                                       >  SRR4302533.152185/1‑94 (MQ=60)
        ATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAAT                                                                                       >  SRR4302533.844079/1‑94 (MQ=60)
        ATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAAT                                                                                       >  SRR4302533.5970368/1‑94 (MQ=60)
         TGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCATTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATT                                                                                      <  SRR4302533.3635689/94‑1 (MQ=60)
           CAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGC                                                                                    >  SRR4302533.4793056/1‑94 (MQ=60)
           CAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGC                                                                                    >  SRR4302533.1327152/1‑94 (MQ=60)
             ATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAA                                                                                  >  SRR4302533.521631/1‑94 (MQ=60)
             ATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAA                                                                                  >  SRR4302533.2698195/1‑94 (MQ=60)
                 ATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCG                                                                              <  SRR4302533.4852108/94‑1 (MQ=60)
                  TTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGT                                                                             <  SRR4302533.4141835/94‑1 (MQ=60)
                   TTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTT                                                                            <  SRR4302533.1340862/94‑1 (MQ=60)
                    TTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTC                                                                           <  SRR4302533.4705975/94‑1 (MQ=60)
                     TAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCA                                                                          >  SRR4302533.5110961/1‑94 (MQ=60)
                      AATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCAT                                                                         <  SRR4302533.1226680/94‑1 (MQ=60)
                        TCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCA                                                                       >  SRR4302533.6248869/1‑94 (MQ=60)
                        TCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCA                                                                       <  SRR4302533.6069140/94‑1 (MQ=60)
                        TCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCAACA                                                                       <  SRR4302533.2594192/94‑1 (MQ=60)
                         CTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCAT                                                                      <  SRR4302533.2529976/94‑1 (MQ=60)
                           GATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTC                                                                    >  SRR4302533.4327665/1‑94 (MQ=60)
                               AGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAAC                                                                >  SRR4302533.3511199/1‑94 (MQ=60)
                               AGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAAA                                                                >  SRR4302533.3578450/1‑94 (MQ=60)
                                GCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGCTCATCATTCCAACA                                                               >  SRR4302533.5929941/1‑94 (MQ=60)
                                 CTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACAT                                                              <  SRR4302533.3513295/94‑1 (MQ=60)
                                 CTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACAT                                                              <  SRR4302533.6257778/94‑1 (MQ=60)
                                  TCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATA                                                             >  SRR4302533.3893664/1‑94 (MQ=60)
                                  TCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATA                                                             >  SRR4302533.4528818/1‑94 (MQ=60)
                                   CATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATAT                                                            <  SRR4302533.5269804/94‑1 (MQ=60)
                                    ATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATT                                                           >  SRR4302533.5923026/1‑94 (MQ=60)
                                     TCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTC                                                          <  SRR4302533.3269069/94‑1 (MQ=60)
                                     TCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTC                                                          >  SRR4302533.1043559/1‑94 (MQ=60)
                                      CTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCC                                                         <  SRR4302533.5223552/94‑1 (MQ=60)
                                      CTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCC                                                         <  SRR4302533.97243/94‑1 (MQ=60)
                                      CTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCC                                                         >  SRR4302533.862787/1‑94 (MQ=60)
                                       TAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCA                                                        <  SRR4302533.1862030/94‑1 (MQ=60)
                                       TAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCA                                                        >  SRR4302533.6167107/1‑94 (MQ=60)
                                         ACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACA                                                      <  SRR4302533.3052724/94‑1 (MQ=60)
                                           GTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAAT                                                    >  SRR4302533.1737671/1‑94 (MQ=60)
                                           GTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAAT                                                    >  SRR4302533.3436663/1‑94 (MQ=60)
                                            TAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATC                                                   <  SRR4302533.2504937/94‑1 (MQ=60)
                                             AAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCG                                                  <  SRR4302533.1741888/94‑1 (MQ=60)
                                              AAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGC                                                 >  SRR4302533.5705599/1‑94 (MQ=60)
                                                 AGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTT                                              <  SRR4302533.4044376/94‑1 (MQ=60)
                                                 AGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTT                                              <  SRR4302533.4084729/94‑1 (MQ=60)
                                                 AGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTT                                              >  SRR4302533.3293816/1‑94 (MQ=60)
                                                 AGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTT                                              <  SRR4302533.330972/94‑1 (MQ=60)
                                                  GCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTC                                             <  SRR4302533.848275/94‑1 (MQ=60)
                                                   CCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCA                                            >  SRR4302533.2674594/1‑94 (MQ=60)
                                                   CCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCA                                            <  SRR4302533.5040527/94‑1 (MQ=60)
                                                   CCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCA                                            >  SRR4302533.5055120/1‑94 (MQ=60)
                                                   CCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCA                                            >  SRR4302533.2449603/1‑94 (MQ=60)
                                                    CTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAG                                           >  SRR4302533.3281372/1‑94 (MQ=60)
                                                    CTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAG                                           <  SRR4302533.5710679/94‑1 (MQ=60)
                                                     TTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGG                                          >  SRR4302533.2849865/1‑94 (MQ=60)
                                                     TTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGG                                          >  SRR4302533.575134/1‑94 (MQ=60)
                                                     CTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGG                                          <  SRR4302533.5281845/94‑1 (MQ=60)
                                                      TTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGA                                         >  SRR4302533.2053763/1‑94 (MQ=60)
                                                       TCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGAT                                        <  SRR4302533.4187335/94‑1 (MQ=60)
                                                       TCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGAT                                        >  SRR4302533.2302055/1‑94 (MQ=60)
                                                       TCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGAT                                        <  SRR4302533.271388/94‑1 (MQ=60)
                                                         ATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGA                                      >  SRR4302533.2520612/1‑94 (MQ=60)
                                                           CTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATA                                    >  SRR4302533.2301294/1‑94 (MQ=60)
                                                           CTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATA                                    <  SRR4302533.3576739/94‑1 (MQ=60)
                                                            TTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAA                                   <  SRR4302533.3572494/94‑1 (MQ=60)
                                                             TTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAAT                                  <  SRR4302533.4549786/94‑1 (MQ=60)
                                                             TTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAAT                                  >  SRR4302533.6234908/1‑94 (MQ=60)
                                                             TTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAAT                                  <  SRR4302533.5122535/94‑1 (MQ=60)
                                                               TGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAG                                >  SRR4302533.5620254/1‑94 (MQ=60)
                                                               TGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAG                                <  SRR4302533.2072432/94‑1 (MQ=60)
                                                               TGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAG                                <  SRR4302533.35047/94‑1 (MQ=60)
                                                                 GCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTT                              <  SRR4302533.5010578/94‑1 (MQ=60)
                                                                    AAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGT                           >  SRR4302533.749303/1‑94 (MQ=60)
                                                                    AAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGT                           <  SRR4302533.3472800/94‑1 (MQ=60)
                                                                     AAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTA                          <  SRR4302533.1220341/94‑1 (MQ=60)
                                                                      AGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAG                         <  SRR4302533.1427328/94‑1 (MQ=60)
                                                                        GATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTT                       <  SRR4302533.5051772/94‑1 (MQ=60)
                                                                        GATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTT                       <  SRR4302533.3573663/94‑1 (MQ=60)
                                                                          TTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTT                     <  SRR4302533.1490565/94‑1 (MQ=60)
                                                                            AACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTAT                   >  SRR4302533.3728194/1‑94 (MQ=60)
                                                                             ACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATA                  >  SRR4302533.5442312/1‑94 (MQ=60)
                                                                              CCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATAT                 <  SRR4302533.997965/94‑1 (MQ=60)
                                                                              CCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATAT                 <  SRR4302533.4078001/94‑1 (MQ=60)
                                                                               CCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATT                >  SRR4302533.1462460/1‑94 (MQ=60)
                                                                               CCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATT                >  SRR4302533.3831429/1‑94 (MQ=60)
                                                                               CCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATT                <  SRR4302533.2750059/94‑1 (MQ=60)
                                                                                CTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTG               <  SRR4302533.4983868/94‑1 (MQ=60)
                                                                                CTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTG               >  SRR4302533.1672293/1‑94 (MQ=60)
                                                                                CTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTG               <  SRR4302533.2157388/94‑1 (MQ=60)
                                                                                CTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTATTATATTG               >  SRR4302533.2101375/1‑94 (MQ=60)
                                                                                 TGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGA              <  SRR4302533.1568154/94‑1 (MQ=60)
                                                                                  GATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAA             >  SRR4302533.4237364/1‑94 (MQ=60)
                                                                                    TGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAAT           <  SRR4302533.2665763/94‑1 (MQ=60)
                                                                                     GTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATT          >  SRR4302533.6279190/1‑94 (MQ=60)
                                                                                     GTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATT          <  SRR4302533.894380/94‑1 (MQ=60)
                                                                                         GGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGC      >  SRR4302533.1909109/1‑94 (MQ=60)
                                                                                         GGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGC      <  SRR4302533.4515770/94‑1 (MQ=60)
                                                                                          GGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCG     <  SRR4302533.2177376/94‑1 (MQ=60)
                                                                                          GGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCG     >  SRR4302533.3431750/1‑94 (MQ=60)
                                                                                          GGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCG     <  SRR4302533.4894773/94‑1 (MQ=60)
                                                                                            GTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCGAT   >  SRR4302533.742380/1‑94 (MQ=60)
                                                                                             TCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCGATA  <  SRR4302533.1698309/94‑1 (MQ=60)
                                                                                             TCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCGATA  <  SRR4302533.2977615/94‑1 (MQ=60)
                                                                                             TCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCGATA  >  SRR4302533.871204/1‑94 (MQ=60)
                                                                                             |                                                                                             
TCGTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGCCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCGATA  >  NC_000913/2107597‑2107783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑