Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,108,194	T→C	Q283R (CAG→CGG)	rfbA ←	glucose‑1‑phosphate thymidylyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,108,194	0	T	C	99.7%	1280.5 / NA	390	Q283R (CAG→CGG)	rfbA	glucose‑1‑phosphate thymidylyltransferase
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (174/215); total (174/216)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 396 total aligned reads displayed.

AAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGA  >  NC_000913/2108104‑2108283

aaaTACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGc                                                                                         >  1:4286275/1‑93 (MQ=255)

 aaTACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGcc                                                                                        >  1:642652/1‑93 (MQ=255)

   tACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCa                                                                                      >  2:6013147/1‑93 (MQ=255)

   tACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCa                                                                                      <  1:7470310/93‑1 (MQ=255)

   tACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCa                                                                                      >  1:4970737/1‑93 (MQ=255)

     ctctTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATa                                                                                    <  2:621004/93‑1 (MQ=255)

     ctctTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATa                                                                                    >  1:464508/1‑93 (MQ=255)

      tctTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATaa                                                                                   >  2:7636781/1‑93 (MQ=255)

      tctTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATaa                                                                                   >  2:5933801/1‑93 (MQ=255)

         tGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAatta                                                                                <  1:981188/93‑1 (MQ=255)

         tGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAatta                                                                                >  1:6972954/1‑93 (MQ=255)

         tGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAatta                                                                                <  2:3825861/93‑1 (MQ=255)

             tCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCt                                                                            >  1:8891559/1‑93 (MQ=255)

             tCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCt                                                                            <  1:3165385/93‑1 (MQ=255)

             tCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCt                                                                            <  1:2587723/93‑1 (MQ=255)

              ccAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCtt                                                                           >  2:5255931/1‑93 (MQ=255)

              ccAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCtt                                                                           >  2:3674534/1‑93 (MQ=255)

               cAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCttt                                                                          <  2:5791408/93‑1 (MQ=255)

               cAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCttt                                                                          <  2:2313944/93‑1 (MQ=255)

                aGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTtta                                                                         >  1:3656329/1‑93 (MQ=255)

                aGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTtta                                                                         <  1:9252278/93‑1 (MQ=255)

                aGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTtta                                                                         <  1:8566345/93‑1 (MQ=255)

                aGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTtta                                                                         <  1:1734073/93‑1 (MQ=255)

                 gAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTttat                                                                        <  1:3938710/93‑1 (MQ=255)

                 gAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTttat                                                                        >  2:2474533/1‑93 (MQ=255)

                  aaTTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTttatt                                                                       >  2:9097239/1‑93 (MQ=255)

                   aTTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTTGTCATTTTATAAAGATACCGCCCATAATTATTCTttatta                                                                      <  1:9109978/93‑1 (MQ=255)

                   aTTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTttatta                                                                      <  2:4497912/93‑1 (MQ=255)

                    ttAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAg                                                                     >  2:4186448/1‑93 (MQ=255)

                    ttAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAg                                                                     >  1:9162796/1‑93 (MQ=255)

                      aGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTg                                                                   <  2:9010216/93‑1 (MQ=255)

                      aGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTg                                                                   <  1:5465036/93‑1 (MQ=255)

                      aGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTg                                                                   >  1:2833522/1‑93 (MQ=255)

                       gCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTgg                                                                  <  1:7692730/93‑1 (MQ=255)

                       gCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTgg                                                                  <  1:9959160/93‑1 (MQ=255)

                        cacaTCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGt                                                                 >  1:6937472/1‑93 (MQ=255)

                         acaTCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTa                                                                >  2:1633261/1‑93 (MQ=255)

                            tCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAg                                                             >  1:4699773/1‑93 (MQ=255)

                            tCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAg                                                             >  2:741827/1‑93 (MQ=255)

                            tCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAg                                                             >  2:1082547/1‑93 (MQ=255)

                            tCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAg                                                             >  1:5184830/1‑93 (MQ=255)

                             cTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGc                                                            >  1:8270938/1‑93 (MQ=255)

                              ttCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCt                                                           >  2:8026310/1‑93 (MQ=255)

                               tCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTa                                                          >  2:6521269/1‑93 (MQ=255)

                               tCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTa                                                          >  1:6106140/1‑93 (MQ=255)

                                cAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTaa                                                         >  1:6616165/1‑93 (MQ=255)

                                 aaTTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAAt                                                        <  1:4863298/93‑1 (MQ=255)

                                 aaTTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAAt                                                        <  2:7263448/93‑1 (MQ=255)

                                  aTTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAAtt                                                       <  1:4489402/93‑1 (MQ=255)

                                   tttCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAAttt                                                      >  1:7934035/1‑93 (MQ=255)

                                     tCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTc                                                    <  2:5020869/93‑1 (MQ=255)

                                     tCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTc                                                    <  1:3398978/93‑1 (MQ=255)

                                      cAGTTCTAATCACGTTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCt                                                   <  2:6770721/93‑1 (MQ=255)

                                      cAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCt                                                   >  2:3083503/1‑93 (MQ=255)

                                        gTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTa                                                 <  2:9390460/93‑1 (MQ=255)

                                          tCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACt                                               <  2:2692772/93‑1 (MQ=255)

                                            tAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTg                                             >  2:2803388/1‑93 (MQ=255)

                                               tCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTc                                          >  2:4704417/1‑93 (MQ=255)

                                               tCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTc                                          >  2:8675722/1‑93 (MQ=255)

                                                cacaTTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCa                                         <  1:1272665/93‑1 (MQ=255)

                                                 acaTTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCaa                                        >  2:5573359/1‑93 (MQ=255)

                                                    ttcattAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACAt                                     <  1:1842645/93‑1 (MQ=255)

                                                        ttAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAAt                                 <  2:1314409/93‑1 (MQ=255)

                                                        ttAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAAt                                 >  2:7029520/1‑93 (MQ=255)

                                                           aTTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATaaa                              >  2:2583478/1‑93 (MQ=255)

                                                            tttGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATaaaa                             >  2:7556321/1‑93 (MQ=255)

                                                            tttGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATaaaa                             >  1:2297582/1‑93 (MQ=255)

                                                              tGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAAcc                           >  2:8483870/1‑93 (MQ=255)

                                                                 aTCCTTCGTCATTTTATAAATATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCttt                        <  2:3584055/93‑1 (MQ=255)

                                                                 aTCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCttt                        <  1:8135774/93‑1 (MQ=255)

                                                                  tCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTa                       <  2:3441647/93‑1 (MQ=255)

                                                                   ccTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTCGTGGTACAGCTAATTTTCTTACTTGCTCAACATGAATCAAAACTTTag                      >  1:1019268/1‑92 (MQ=255)

                                                                   ccTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTAc                      >  2:4910347/1‑93 (MQ=255)

                                                                   ccTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTAc                      <  1:948585/93‑1 (MQ=255)

                                                                    cTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACg                     <  1:1458970/93‑1 (MQ=255)

                                                                    cTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACg                     >  2:781935/1‑93 (MQ=255)

                                                                     ttCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGa                    <  2:2034594/93‑1 (MQ=255)

                                                                       cGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGaaa                  <  2:1928181/93‑1 (MQ=255)

                                                                        gTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAAt                 >  2:8787203/1‑93 (MQ=255)

                                                                        gTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAAt                 >  2:9816054/1‑93 (MQ=255)

                                                                        gTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAAt                 >  1:1972018/1‑93 (MQ=255)

                                                                        gTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAAt                 <  1:7188462/93‑1 (MQ=255)

                                                                        gTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAAt                 <  2:1767600/93‑1 (MQ=255)

                                                                        gTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAAACTTTACGAAAt                 >  2:3996804/1‑93 (MQ=255)

                                                                           aTTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCa              <  1:3749466/93‑1 (MQ=255)

                                                                           aTTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCa              >  1:5927547/1‑93 (MQ=255)

                                                                            ttttATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCaa             <  2:6113189/93‑1 (MQ=255)

                                                                             tttATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAt            <  2:9568155/93‑1 (MQ=255)

                                                                              ttATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAtc           <  2:8183249/93‑1 (MQ=255)

                                                                              ttATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAtc           <  2:5442325/93‑1 (MQ=255)

                                                                                ataAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAtctc         >  2:884867/1‑93 (MQ=255)

                                                                                ataAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAtctc         >  2:6431222/1‑93 (MQ=255)

                                                                                 taAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATctct        <  1:783592/93‑1 (MQ=255)

                                                                                  aaaGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCtt       <  1:7904363/93‑1 (MQ=255)

                                                                                   aaGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTc      >  1:2410274/1‑93 (MQ=255)

                                                                                    aGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTca     >  1:8821154/1‑93 (MQ=255)

                                                                                    aGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTca     <  2:7594141/93‑1 (MQ=255)

                                                                                    aGATACCGCACATAATTATTCATTATTAGTGGTACAGCTAATTTTCTTACTTGATCAACATCAAAAAATCCTTTACGAGATGCAATCTATTca     <  2:9242667/93‑1 (MQ=255)

                                                                                      aTACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTcagg   >  2:3878345/1‑93 (MQ=255)

                                                                                       tACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTcagga  <  2:1535062/93‑1 (MQ=255)

AAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGA  >  NC_000913/2108104‑2108283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGACAG  >  NC_000913/2108101‑2108286

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACC                                                                                              <  SRR4302540.4905426/94‑1 (MQ=60)

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACC                                                                                              <  SRR4302540.7680552/94‑1 (MQ=60)

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACC                                                                                              <  SRR4302540.7680553/94‑1 (MQ=60)

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACC                                                                                              <  SRR4302540.8487227/94‑1 (MQ=60)

 CCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCG                                                                                             >  SRR4302540.5109191/1‑94 (MQ=60)

  CAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGC                                                                                            >  SRR4302540.9999521/1‑94 (MQ=60)

  CAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGC                                                                                            >  SRR4302540.4332901/1‑94 (MQ=60)

   AAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCC                                                                                           >  SRR4302540.649498/1‑94 (MQ=60)

    AATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCC                                                                                          <  SRR4302540.3376765/94‑1 (MQ=60)

    AATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCC                                                                                          <  SRR4302540.10098562/94‑1 (MQ=60)

    AATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCC                                                                                          <  SRR4302540.7745223/94‑1 (MQ=60)

    AATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCAGTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCC                                                                                          >  SRR4302540.4823988/1‑94 (MQ=60)

     ATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCA                                                                                         >  SRR4302540.5024526/1‑94 (MQ=60)

     ATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCA                                                                                         >  SRR4302540.5024523/1‑94 (MQ=60)

      TACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCAT                                                                                        >  SRR4302540.7452326/1‑94 (MQ=60)

      TACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCAT                                                                                        <  SRR4302540.7553655/94‑1 (MQ=60)

       ACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATA                                                                                       <  SRR4302540.4482637/94‑1 (MQ=60)

       ACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATA                                                                                       >  SRR4302540.2514952/1‑94 (MQ=60)

       ACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATA                                                                                       >  SRR4302540.469465/1‑94 (MQ=60)

        CTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAA                                                                                      >  SRR4302540.4739727/1‑94 (MQ=60)

         TCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAAT                                                                                     >  SRR4302540.8366573/1‑94 (MQ=60)

          CTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATT                                                                                    >  SRR4302540.7140987/1‑94 (MQ=60)

           TTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTA                                                                                   >  SRR4302540.6848945/1‑94 (MQ=60)

           TTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTA                                                                                   >  SRR4302540.7050452/1‑94 (MQ=60)

           TTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTA                                                                                   <  SRR4302540.2273663/94‑1 (MQ=60)

            TGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTAT                                                                                  <  SRR4302540.991238/94‑1 (MQ=60)

            TGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTAT                                                                                  <  SRR4302540.3755740/94‑1 (MQ=60)

             GGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATT                                                                                 <  SRR4302540.1641598/94‑1 (MQ=60)

             GGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATT                                                                                 <  SRR4302540.1641599/94‑1 (MQ=60)

             GGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATT                                                                                 <  SRR4302540.8823900/94‑1 (MQ=60)

              GCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTC                                                                                <  SRR4302540.7026752/94‑1 (MQ=60)

               CTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCT                                                                               <  SRR4302540.932006/94‑1 (MQ=60)

               CTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCT                                                                               >  SRR4302540.9157793/1‑94 (MQ=60)

               CTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCT                                                                               >  SRR4302540.8994490/1‑94 (MQ=60)

                TCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTT                                                                              >  SRR4302540.456149/1‑94 (MQ=60)

                TCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTT                                                                              <  SRR4302540.3199808/94‑1 (MQ=60)

                TCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTT                                                                              <  SRR4302540.2615619/94‑1 (MQ=60)

                 CCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTT                                                                             <  SRR4302540.3529955/94‑1 (MQ=60)

                  CAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTA                                                                            >  SRR4302540.3696370/1‑94 (MQ=60)

                   CGAATCAGCACATCTTCATTTTCAGTGCTAATCAAATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTAT                                                                           <  SRR4302540.6290908/94‑1 (MQ=60)

                   AGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTAT                                                                           <  SRR4302540.1752789/94‑1 (MQ=60)

                   AGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTAT                                                                           <  SRR4302540.8665826/94‑1 (MQ=60)

                   AGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTAT                                                                           <  SRR4302540.6291183/94‑1 (MQ=60)

                   AGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTAT                                                                           <  SRR4302540.9363023/94‑1 (MQ=60)

                    GAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATT                                                                          <  SRR4302540.3981265/94‑1 (MQ=60)

                    GAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATT                                                                          <  SRR4302540.3226810/94‑1 (MQ=60)

                     AATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTA                                                                         >  SRR4302540.246915/1‑94 (MQ=60)

                      ATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTTGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAG                                                                        <  SRR4302540.9219461/94‑1 (MQ=60)

                      ATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAG                                                                        <  SRR4302540.2922539/94‑1 (MQ=60)

                      ATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAG                                                                        <  SRR4302540.8024335/94‑1 (MQ=60)

                      ATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAG                                                                        <  SRR4302540.185247/94‑1 (MQ=60)

                      ATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAG                                                                        >  SRR4302540.8963876/1‑94 (MQ=60)

                      ATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAG                                                                        >  SRR4302540.9272758/1‑94 (MQ=60)

                       TTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGT                                                                       >  SRR4302540.9344451/1‑94 (MQ=60)

                       TTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGT                                                                       >  SRR4302540.4791225/1‑94 (MQ=60)

                       TTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGT                                                                       <  SRR4302540.8864281/94‑1 (MQ=60)

                        TAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTG                                                                      >  SRR4302540.2864167/1‑94 (MQ=60)

                        TAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTG                                                                      <  SRR4302540.3792842/94‑1 (MQ=60)

                         AGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGG                                                                     <  SRR4302540.5525191/94‑1 (MQ=60)

                         AGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGG                                                                     >  SRR4302540.8029738/1‑94 (MQ=60)

                          GCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGT                                                                    >  SRR4302540.7014688/1‑94 (MQ=60)

                          GCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGT                                                                    <  SRR4302540.7780269/94‑1 (MQ=60)

                          GCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGT                                                                    <  SRR4302540.7780270/94‑1 (MQ=60)

                          GCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGT                                                                    <  SRR4302540.10075384/94‑1 (MQ=60)

                             CATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACA                                                                 <  SRR4302540.1899059/94‑1 (MQ=60)

                             CATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACA                                                                 <  SRR4302540.8423664/94‑1 (MQ=60)

                             CATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACA                                                                 <  SRR4302540.8987889/94‑1 (MQ=60)

                             CATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACA                                                                 >  SRR4302540.2683562/1‑94 (MQ=60)

                              ATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAG                                                                <  SRR4302540.1839465/94‑1 (MQ=60)

                              ATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAG                                                                <  SRR4302540.9760618/94‑1 (MQ=60)

                              ATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAG                                                                >  SRR4302540.5241272/1‑94 (MQ=60)

                              ATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAG                                                                >  SRR4302540.4774965/1‑94 (MQ=60)

                              ATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAG                                                                >  SRR4302540.4704264/1‑94 (MQ=60)

                              ATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAG                                                                >  SRR4302540.4750008/1‑94 (MQ=60)

                               TCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGC                                                               >  SRR4302540.8367031/1‑94 (MQ=60)

                               TCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGC                                                               <  SRR4302540.7877109/94‑1 (MQ=60)

                               TCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGC                                                               >  SRR4302540.3473250/1‑94 (MQ=60)

                                CTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCT                                                              >  SRR4302540.6643810/1‑94 (MQ=60)

                                 TTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTA                                                             >  SRR4302540.6174147/1‑94 (MQ=60)

                                 TTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTA                                                             >  SRR4302540.1769802/1‑94 (MQ=60)

                                  TCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAA                                                            >  SRR4302540.6689438/1‑94 (MQ=60)

                                    AATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATT                                                          <  SRR4302540.3708243/94‑1 (MQ=60)

                                    AATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATT                                                          <  SRR4302540.4915456/94‑1 (MQ=60)

                                     ATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTT                                                         <  SRR4302540.4538087/94‑1 (MQ=60)

                                     ATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTT                                                         >  SRR4302540.8026510/1‑94 (MQ=60)

                                      TTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTT                                                        >  SRR4302540.1041855/1‑94 (MQ=60)

                                        TCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCT                                                      <  SRR4302540.3436037/94‑1 (MQ=60)

                                         CAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTT                                                     <  SRR4302540.336907/94‑1 (MQ=60)

                                          AGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTA                                                    >  SRR4302540.8548762/1‑94 (MQ=60)

                                           GTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTAC                                                   <  SRR4302540.9367019/94‑1 (MQ=60)

                                            TTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACT                                                  >  SRR4302540.5579581/1‑94 (MQ=60)

                                            TTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACT                                                  <  SRR4302540.3879569/94‑1 (MQ=60)

                                            TTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACT                                                  <  SRR4302540.7025820/94‑1 (MQ=60)

                                             TCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTT                                                 <  SRR4302540.4454054/94‑1 (MQ=60)

                                             TCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTT                                                 <  SRR4302540.9543803/94‑1 (MQ=60)

                                             TCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTAGAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTT                                                 <  SRR4302540.1492251/94‑1 (MQ=60)

                                              CTAATCACATTCATTAATTTGACTCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTG                                                <  SRR4302540.2006481/94‑1 (MQ=60)

                                               TAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTtg                                               <  SRR4302540.2698439/94‑3 (MQ=60)

                                               TAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGC                                               >  SRR4302540.3841326/1‑94 (MQ=60)

                                                AATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCT                                              <  SRR4302540.7589135/94‑1 (MQ=60)

                                                 ATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTC                                             >  SRR4302540.768448/1‑94 (MQ=60)

                                                  TCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCA                                            >  SRR4302540.8303181/1‑94 (MQ=60)

                                                   CACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAA                                           <  SRR4302540.1285772/94‑1 (MQ=60)

                                                   CACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAA                                           <  SRR4302540.7086184/94‑1 (MQ=60)

                                                     CATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACA                                         <  SRR4302540.7448492/94‑1 (MQ=60)

                                                     CATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACA                                         >  SRR4302540.6126675/1‑94 (MQ=60)

                                                     CATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACA                                         <  SRR4302540.8220484/94‑1 (MQ=60)

                                                     CATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACA                                         <  SRR4302540.826062/94‑1 (MQ=60)

                                                      ATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACAT                                        >  SRR4302540.1878267/1‑94 (MQ=60)

                                                      ATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACAT                                        <  SRR4302540.5012006/94‑1 (MQ=60)

                                                      ATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACAT                                        <  SRR4302540.372293/94‑1 (MQ=60)

                                                       TTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATC                                       <  SRR4302540.1862826/94‑1 (MQ=60)

                                                         CATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAA                                     >  SRR4302540.9622433/1‑94 (MQ=60)

                                                         CATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAA                                     <  SRR4302540.7972503/94‑1 (MQ=60)

                                                         CATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAA                                     >  SRR4302540.792153/1‑94 (MQ=60)

                                                          ATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAAT                                    >  SRR4302540.1401565/1‑94 (MQ=60)

                                                          ATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAAT                                    >  SRR4302540.5695033/1‑94 (MQ=60)

                                                             AATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAA                                 >  SRR4302540.4050070/1‑94 (MQ=60)

                                                             AATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAA                                 >  SRR4302540.8111626/1‑94 (MQ=60)

                                                              ATTTGAATCCTTCGTCATTTTATACAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAA                                >  SRR4302540.2322310/1‑94 (MQ=60)

                                                              ATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAA                                >  SRR4302540.2322309/1‑94 (MQ=60)

                                                               TTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAAC                               <  SRR4302540.5497783/94‑1 (MQ=60)

                                                                TTGAATCCTTCGTCCTTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACC                              >  SRR4302540.1166105/1‑94 (MQ=60)

                                                                TTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACC                              <  SRR4302540.2247805/94‑1 (MQ=60)

                                                                 TGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCT                             <  SRR4302540.8024634/94‑1 (MQ=60)

                                                                 TGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCT                             <  SRR4302540.8024637/94‑1 (MQ=60)

                                                                  GAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTT                            >  SRR4302540.6840327/1‑94 (MQ=60)

                                                                  GAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTT                            <  SRR4302540.6109066/94‑1 (MQ=60)

                                                                    ATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTA                          >  SRR4302540.5080032/1‑94 (MQ=60)

                                                                    ATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTA                          >  SRR4302540.8445082/1‑94 (MQ=60)

                                                                    ATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTA                          <  SRR4302540.8230199/94‑1 (MQ=60)

                                                                    ATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTA                          >  SRR4302540.6676763/1‑94 (MQ=60)

                                                                     TCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTCGTGGTACAGCTAATTTTCTTACTTGCTCAACATgaatcaaaactttag                         >  SRR4302540.1029614/1‑79 (MQ=60)

                                                                     TCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTAC                         <  SRR4302540.8721932/94‑1 (MQ=60)

                                                                     TCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTAC                         <  SRR4302540.9525345/94‑1 (MQ=60)

                                                                     TCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTAC                         >  SRR4302540.7037853/1‑94 (MQ=60)

                                                                     TCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTAC                         >  SRR4302540.4992148/1‑94 (MQ=60)

                                                                     TCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTAC                         <  SRR4302540.9729542/94‑1 (MQ=60)

                                                                      CCTTCGTTATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGTTCAACATCAATAAAACCTTTACG                        <  SRR4302540.1869428/94‑1 (MQ=60)

                                                                      CCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACG                        <  SRR4302540.8997323/94‑1 (MQ=60)

                                                                      CCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACG                        <  SRR4302540.958459/94‑1 (MQ=60)

                                                                      CCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACG                        >  SRR4302540.3150517/1‑94 (MQ=60)

                                                                       CTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGA                       <  SRR4302540.1474854/94‑1 (MQ=60)

                                                                        TTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAA                      >  SRR4302540.4058055/1‑94 (MQ=60)

                                                                          agtaattgTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATAAATAAAACCTTTACGAAAT                    <  SRR4302540.5454681/86‑1 (MQ=60)

                                                                          CGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAAT                    <  SRR4302540.788417/94‑1 (MQ=60)

                                                                          CGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAAT                    >  SRR4302540.1993427/1‑94 (MQ=60)

                                                                          CGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAAT                    <  SRR4302540.6409322/94‑1 (MQ=60)

                                                                           GTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATG                   <  SRR4302540.9152556/94‑1 (MQ=60)

                                                                           GTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATG                   <  SRR4302540.7268593/94‑1 (MQ=60)

                                                                           GTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATG                   <  SRR4302540.3011999/94‑1 (MQ=60)

                                                                            TCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGC                  <  SRR4302540.7549905/94‑1 (MQ=60)

                                                                             CATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCA                 >  SRR4302540.5316761/1‑94 (MQ=60)

                                                                             CATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCA                 >  SRR4302540.5993040/1‑94 (MQ=60)

                                                                             CATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCA                 <  SRR4302540.4599227/94‑1 (MQ=60)

                                                                              ATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAA                <  SRR4302540.2349037/94‑1 (MQ=60)

                                                                              ATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAA                <  SRR4302540.3790374/94‑1 (MQ=60)

                                                                               TTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAT               <  SRR4302540.2262269/94‑1 (MQ=60)

                                                                               TTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAT               <  SRR4302540.9316392/94‑1 (MQ=60)

                                                                                TTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATC              <  SRR4302540.1422099/94‑1 (MQ=60)

                                                                                TTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATC              <  SRR4302540.2783038/94‑1 (MQ=60)

                                                                                TTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATC              <  SRR4302540.5591879/94‑1 (MQ=60)

                                                                                TTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATC              <  SRR4302540.4697449/94‑1 (MQ=60)

                                                                                 TTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCT             <  SRR4302540.9253407/94‑1 (MQ=60)

                                                                                  TATAAAGATACCGCCTATATTTATTCTTTATGAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTC            <  SRR4302540.10067652/94‑1 (MQ=60)

                                                                                  TATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTC            >  SRR4302540.4647819/1‑94 (MQ=60)

                                                                                   ATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAACCCTTTACGAAATGCAATCTCT           <  SRR4302540.3586260/94‑1 (MQ=60)

                                                                                   ATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCT           <  SRR4302540.6067245/94‑1 (MQ=60)

                                                                                   ATAAAGATACCGCCCATAATTATTCTTTATTAGTGGGACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCT           >  SRR4302540.2339592/1‑94 (MQ=60)

                                                                                    TAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTT          <  SRR4302540.791925/94‑1 (MQ=60)

                                                                                    TAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTT          <  SRR4302540.1367865/94‑1 (MQ=60)

                                                                                     AAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTC         >  SRR4302540.2436260/1‑94 (MQ=60)

                                                                                     AAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTC         >  SRR4302540.9985900/1‑94 (MQ=60)

                                                                                     AAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTC         <  SRR4302540.7996551/94‑1 (MQ=60)

                                                                                      AAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCA        >  SRR4302540.9224254/1‑94 (MQ=60)

                                                                                      AAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCA        <  SRR4302540.2588176/94‑1 (MQ=60)

                                                                                      AAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCA        >  SRR4302540.8923151/1‑94 (MQ=60)

                                                                                      AAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCA        >  SRR4302540.8923150/1‑94 (MQ=60)

                                                                                       AGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAG       <  SRR4302540.6866570/94‑1 (MQ=60)

                                                                                       AGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAG       >  SRR4302540.7127002/1‑94 (MQ=60)

                                                                                       AGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAG       <  SRR4302540.44350/94‑1 (MQ=60)

                                                                                       AGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAG       >  SRR4302540.4263073/1‑94 (MQ=60)

                                                                                        GATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGG      <  SRR4302540.9236339/94‑1 (MQ=60)

                                                                                        GATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGG      <  SRR4302540.5064108/94‑1 (MQ=60)

                                                                                         ATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGA     >  SRR4302540.5021307/1‑94 (MQ=60)

                                                                                          TACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGAC    <  SRR4302540.7979054/94‑1 (MQ=60)

                                                                                            CCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGACAG  >  SRR4302540.5625573/1‑94 (MQ=60)

                                                                                            CCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGACAG  >  SRR4302540.7112572/1‑94 (MQ=60)

                                                                                            CCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGACAG  <  SRR4302540.3624716/94‑1 (MQ=60)

                                                                                            CCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGACAG  <  SRR4302540.4572022/94‑1 (MQ=60)

                                                                                            CCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGACAA  <  SRR4302540.3624717/94‑1 (MQ=60)

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGACAG  >  NC_000913/2108101‑2108286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`