Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,116,875 |
C→T |
G436S (GGC→AGC) |
wzxC ← |
putative export protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,116,875 | 0 | C | T | 100.0%
| 699.3
/ NA
| 187 | G436S (GGC→AGC) | wzxC | putative export protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (90/97); total (90/97) |
Only 100 of 192 total aligned reads displayed.
GCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCCCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCAAGAA > NC_000913/2116785‑2116964
|
gCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCa > 2:1347233/1‑93 (MQ=255)
gCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCa < 1:3113001/93‑1 (MQ=255)
gCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCa < 2:4619279/93‑1 (MQ=255)
gCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCa < 1:2109988/93‑1 (MQ=255)
aaTCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAgcgc < 1:6288115/93‑1 (MQ=255)
aaTCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAgcgc > 1:3742484/1‑93 (MQ=255)
atcatcACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCa < 2:435408/93‑1 (MQ=255)
tcatcaCCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCAt > 1:2727634/1‑93 (MQ=255)
catcaCCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATa > 2:2458010/1‑93 (MQ=255)
atcaCCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATaa > 1:191175/1‑93 (MQ=255)
atcaCCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATaa > 2:4342839/1‑93 (MQ=255)
tcaCCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAAc < 1:4953589/93‑1 (MQ=255)
tcaCCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAAc < 2:4497453/93‑1 (MQ=255)
caccacAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACt < 1:514630/93‑1 (MQ=255)
ccacAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGa > 1:4360440/1‑93 (MQ=255)
cacaAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGac > 2:2619050/1‑93 (MQ=255)
aaaCGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGaccac < 1:3400755/93‑1 (MQ=255)
cAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGt < 2:413886/93‑1 (MQ=255)
aGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTc > 1:4740669/1‑93 (MQ=255)
aGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTc < 2:6223408/93‑1 (MQ=255)
aGCACCCCCGTGGCTATTTGCACCGCCAGCAGCACCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTc < 2:3108226/93‑1 (MQ=255)
ccccccGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGc < 2:4185147/92‑1 (MQ=255)
aCCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGc > 2:4067520/1‑93 (MQ=255)
cccccGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCa > 1:4854289/1‑93 (MQ=255)
cccccGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCa > 2:891184/1‑93 (MQ=255)
ccccGTGGCTATTTGCACCGACAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAg < 1:304718/93‑1 (MQ=255)
cccGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGc < 2:3249667/93‑1 (MQ=255)
cccGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGc > 2:5549965/1‑93 (MQ=255)
ccGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCg > 1:28314/1‑93 (MQ=255)
ccGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCg > 2:4874838/1‑93 (MQ=255)
cGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCga < 1:2575530/93‑1 (MQ=255)
gTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCgag > 1:96478/1‑93 (MQ=255)
gTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCgag > 2:5015443/1‑93 (MQ=255)
tGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCgaga > 2:1685771/1‑93 (MQ=255)
tGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCgaga > 1:5852756/1‑93 (MQ=255)
tGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCgaga > 1:1074481/1‑93 (MQ=255)
tGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCgaga > 1:2346342/1‑93 (MQ=255)
ggCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCgagag > 1:1811073/1‑93 (MQ=255)
ggCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCgagag > 2:786013/1‑93 (MQ=255)
gCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCgagaga < 2:4054475/93‑1 (MQ=255)
gCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCgagaga < 1:421716/93‑1 (MQ=255)
gCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCgagaga < 2:2320753/93‑1 (MQ=255)
cTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGAt < 2:4565975/93‑1 (MQ=255)
tttGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATaaa > 1:4558444/1‑93 (MQ=255)
tGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAAc < 1:3580905/93‑1 (MQ=255)
gCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACg > 1:3792233/1‑93 (MQ=255)
cccGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGc < 1:1201367/92‑1 (MQ=255)
aCCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGc < 1:327420/93‑1 (MQ=255)
aCCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGc < 1:3305621/93‑1 (MQ=255)
aCCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGc < 2:1482507/93‑1 (MQ=255)
ccGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCa < 2:55827/93‑1 (MQ=255)
ccGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCa > 1:141678/1‑93 (MQ=255)
ccGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCa < 1:3670964/93‑1 (MQ=255)
cGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAg < 1:4178962/93‑1 (MQ=255)
cagcagCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCa > 1:2629884/1‑93 (MQ=255)
cagcagCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCa < 2:3738220/93‑1 (MQ=255)
agcagcATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCAt > 2:12288/1‑93 (MQ=255)
agcagcATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCAt > 2:5797487/1‑93 (MQ=255)
cagcaTCCCCAGCGCCAGTTGCCCTTTCAGCACAATGATCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATaa < 1:5427677/93‑1 (MQ=255)
agcagcCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATaaa < 2:3425237/93‑1 (MQ=255)
gcaTCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAAc > 2:3194539/1‑93 (MQ=255)
gcaTCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAAc > 2:1150320/1‑93 (MQ=255)
gcaTCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAAc < 2:4828393/93‑1 (MQ=255)
tCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCa > 1:2397368/1‑93 (MQ=255)
accccAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCa < 1:2040800/92‑1 (MQ=255)
cccAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAgg < 1:4985729/93‑1 (MQ=255)
ccAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGa > 1:1981994/1‑93 (MQ=255)
ccAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGa < 2:366114/93‑1 (MQ=255)
ccAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGa > 1:5763702/1‑93 (MQ=255)
ccAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGa < 2:51247/93‑1 (MQ=255)
cAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGAt > 1:2223864/1‑93 (MQ=255)
gcgcCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGt > 2:1333468/1‑93 (MQ=255)
cgcCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTa > 1:3893315/1‑93 (MQ=255)
gcCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAATCTCAGGATGTAc < 1:5511053/93‑1 (MQ=255)
ccAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACt > 2:2417982/1‑93 (MQ=255)
ccAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACt < 1:4579077/93‑1 (MQ=255)
cAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTg < 2:2116446/93‑1 (MQ=255)
gTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGc > 1:3497347/1‑93 (MQ=255)
ttGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCg > 1:5598735/1‑93 (MQ=255)
tGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAGACTCAGGATGTACTGGCGa < 2:6148890/93‑1 (MQ=255)
gCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCTGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGAt < 1:2155705/93‑1 (MQ=255)
ccTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATaa < 1:4107691/93‑1 (MQ=255)
cTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAAc > 2:2111625/1‑93 (MQ=255)
tttCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACt > 1:1627141/1‑93 (MQ=255)
tttCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACt > 2:4481216/1‑93 (MQ=255)
ttCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTg > 1:1012449/1‑93 (MQ=255)
ttCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTg < 1:730899/93‑1 (MQ=255)
tCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTgg < 1:6268326/93‑1 (MQ=255)
cAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGa < 2:1988893/93‑1 (MQ=255)
aGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGaa < 2:5869812/93‑1 (MQ=255)
gCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGCAc > 2:5271280/1‑93 (MQ=255)
gCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAAc > 2:307033/1‑93 (MQ=255)
acaATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCa > 2:4842998/1‑93 (MQ=255)
acaATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCa > 1:2838281/1‑93 (MQ=255)
acaATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCa < 1:339831/93‑1 (MQ=255)
caATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCaa < 2:1818803/93‑1 (MQ=255)
caATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCaa < 2:67962/93‑1 (MQ=255)
caATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCaa > 1:5240676/1‑93 (MQ=255)
aaTGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCAAg > 1:1507878/1‑93 (MQ=255)
aaTGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCAAg < 1:2871623/93‑1 (MQ=255)
|
GCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCCCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCAAGAA > NC_000913/2116785‑2116964
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACAGCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCCCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCAAGAACCGG > NC_000913/2116782‑2116968
|
ACAGCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCT > SRR4302533.2942290/1‑94 (MQ=60)
ACAGCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGCTGCCCTTTCAGCACAATGCT > SRR4302533.1395589/1‑94 (MQ=60)
CAGCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTC < SRR4302533.4676463/94‑1 (MQ=60)
AGCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCA < SRR4302533.4320650/94‑1 (MQ=60)
GCACAATCATCACCACAAACGCCAGCTCCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAG < SRR4302533.1951824/94‑1 (MQ=60)
GCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAG < SRR4302533.2123003/94‑1 (MQ=60)
GCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAG < SRR4302533.5548384/94‑1 (MQ=60)
GCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAG < SRR4302533.3132145/94‑1 (MQ=60)
GCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAAAGCTCAG < SRR4302533.1883117/94‑1 (MQ=60)
ACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCG > SRR4302533.6163310/1‑94 (MQ=60)
CAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGC > SRR4302533.4654487/1‑94 (MQ=60)
CAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGC > SRR4302533.3765437/1‑94 (MQ=60)
AATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCA < SRR4302533.5784560/94‑1 (MQ=60)
AATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCA < SRR4302533.6325627/94‑1 (MQ=60)
ATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCAT > SRR4302533.2744368/1‑94 (MQ=60)
CATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAA > SRR4302533.192376/1‑94 (MQ=60)
ATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAAC > SRR4302533.4022192/1‑94 (MQ=60)
ATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAAC > SRR4302533.3259662/1‑94 (MQ=60)
TCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACT < SRR4302533.2537966/94‑1 (MQ=60)
TCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACT < SRR4302533.4983593/94‑1 (MQ=60)
CACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTG < SRR4302533.517687/94‑1 (MQ=60)
ACCACAAGCGCCAGCACCCCCGTGGCTATTGGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGA < SRR4302533.3623584/94‑1 (MQ=60)
ACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGA > SRR4302533.4386761/1‑94 (MQ=60)
CCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGAC > SRR4302533.1121054/1‑94 (MQ=60)
CACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACC < SRR4302533.2877056/94‑1 (MQ=60)
AAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACC < SRR4302533.3421750/94‑1 (MQ=60)
ACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAG > SRR4302533.4871957/1‑94 (MQ=60)
ACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAG < SRR4302533.1517102/94‑1 (MQ=60)
CGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGC > SRR4302533.1669930/1‑94 (MQ=60)
GCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGATCACCAGCG > SRR4302533.5827212/1‑94 (MQ=60)
CAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTC > SRR4302533.4769413/1‑94 (MQ=60)
AGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCG < SRR4302533.2136114/94‑1 (MQ=60)
CACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGC < SRR4302533.5329377/94‑1 (MQ=60)
CCCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCA < SRR4302533.809485/94‑1 (MQ=60)
ACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCA > SRR4302533.4883708/1‑94 (MQ=60)
CCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAG > SRR4302533.2020058/1‑94 (MQ=60)
CCCCCGTGACTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAG < SRR4302533.522455/94‑1 (MQ=60)
CCCCGTGGCTATTTGCACCGACAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGC < SRR4302533.306579/94‑1 (MQ=60)
CCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCG > SRR4302533.28506/1‑94 (MQ=60)
CGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAG < SRR4302533.2591375/94‑1 (MQ=60)
CGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAG > SRR4302533.97083/1‑94 (MQ=60)
GTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGA > SRR4302533.5888141/1‑94 (MQ=60)
GTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGA > SRR4302533.1080814/1‑94 (MQ=60)
GTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGA > SRR4302533.2935695/1‑94 (MQ=60)
GTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGA > SRR4302533.2360863/1‑94 (MQ=60)
TGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAG > SRR4302533.1822137/1‑94 (MQ=60)
GCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGAT < SRR4302533.424239/94‑1 (MQ=60)
CTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATA > SRR4302533.3101755/1‑94 (MQ=60)
CTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATA > SRR4302533.4149659/1‑94 (MQ=60)
ATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAA > SRR4302533.4586089/1‑94 (MQ=60)
ATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAA < SRR4302533.5055057/94‑1 (MQ=60)
TTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAAC < SRR4302533.3481605/94‑1 (MQ=60)
TGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACG < SRR4302533.3602967/94‑1 (MQ=60)
TGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACG > SRR4302533.3815448/1‑94 (MQ=60)
CCCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCA < SRR4302533.1208584/94‑1 (MQ=60)
ACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCA > SRR4302533.1458515/1‑94 (MQ=60)
ACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCA > SRR4302533.142583/1‑94 (MQ=60)
ACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCA < SRR4302533.3326031/94‑1 (MQ=60)
ACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCA < SRR4302533.329412/94‑1 (MQ=60)
CCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAG < SRR4302533.3693526/94‑1 (MQ=60)
CGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGC < SRR4302533.4204276/94‑1 (MQ=60)
CGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGC > SRR4302533.70276/1‑94 (MQ=60)
GCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCC < SRR4302533.2067299/94‑1 (MQ=60)
CCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCA > SRR4302533.2646047/1‑94 (MQ=60)
CAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAA > SRR4302533.3575938/1‑94 (MQ=60)
CAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAA < SRR4302533.4535527/94‑1 (MQ=60)
CAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGATCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAA < SRR4302533.5460363/94‑1 (MQ=60)
AGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAAC < SRR4302533.2853395/94‑1 (MQ=60)
GCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACT < SRR4302533.4896354/94‑1 (MQ=60)
GCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACT < SRR4302533.2699975/94‑1 (MQ=60)
CATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTC > SRR4302533.3770701/1‑94 (MQ=60)
ATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCA > SRR4302533.2412167/1‑94 (MQ=60)
TCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAG < SRR4302533.3858653/94‑1 (MQ=60)
ACCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAG < SRR4302533.2053378/94‑1 (MQ=60)
CCCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGG < SRR4302533.2772181/94‑1 (MQ=60)
CCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGA < SRR4302533.5015960/94‑1 (MQ=60)
CCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGA > SRR4302533.1994125/1‑94 (MQ=60)
CCCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGA > SRR4302533.5798487/1‑94 (MQ=60)
CCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGAT < SRR4302533.3696154/94‑1 (MQ=60)
CCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGAT < SRR4302533.3303236/94‑1 (MQ=60)
CCAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGAT > SRR4302533.2237598/1‑94 (MQ=60)
CAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATG < SRR4302533.3416758/94‑1 (MQ=60)
CAGCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATG > SRR4302533.4234410/1‑94 (MQ=60)
GCGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTA > SRR4302533.3917075/1‑94 (MQ=60)
CGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTAC < SRR4302533.262125/94‑1 (MQ=60)
CGCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTAC < SRR4302533.4278934/94‑1 (MQ=60)
GCCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAATCTCAGGATGTACT < SRR4302533.5544323/94‑1 (MQ=60)
CCAGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTG < SRR4302533.4606829/94‑1 (MQ=60)
AGTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGC > SRR4302533.3518913/1‑94 (MQ=60)
GTTGCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCG > SRR4302533.5632561/1‑94 (MQ=60)
GCCCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCTGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATA < SRR4302533.2168978/94‑1 (MQ=60)
CCTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAAC < SRR4302533.4132665/94‑1 (MQ=60)
CTTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACT > SRR4302533.1636997/1‑94 (MQ=60)
TTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTG < SRR4302533.1402446/94‑1 (MQ=60)
TTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTG > SRR4302533.1018374/1‑94 (MQ=60)
TTTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTG < SRR4302533.4991399/94‑1 (MQ=60)
TTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGG < SRR4302533.735204/94‑1 (MQ=60)
TTCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGAACTGGCGATAACTGG > SRR4302533.236521/1‑94 (MQ=60)
TCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGA < SRR4302533.5469343/94‑1 (MQ=60)
TCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGA < SRR4302533.218372/94‑1 (MQ=60)
TCAGCACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGA < SRR4302533.6305783/94‑1 (MQ=60)
CACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCA > SRR4302533.2855748/1‑94 (MQ=60)
ACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCAA > SRR4302533.5272180/1‑94 (MQ=60)
ACAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCAA < SRR4302533.341904/94‑1 (MQ=60)
CAATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCAAG > SRR4302533.1516967/1‑94 (MQ=60)
AATGCTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCAAGA < SRR4302533.2889292/94‑1 (MQ=60)
CTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCAAGAACCG > SRR4302533.5016566/1‑94 (MQ=60)
CTCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCAAGAACCG > SRR4302533.4533915/1‑94 (MQ=60)
TCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCAAGAACCGG < SRR4302533.3429256/94‑1 (MQ=60)
|
ACAGCACAATCATCACCACAAACGCCAGCACCCCCGTGGCTATTTGCACCGCCAGCAGCATCCCCAGCGCCAGTTGCCCTTTCAGCACAATGCCCAGCGCATAACTGACCACCAGCGTCGGCAGCGAGAGATAAAACGGCAGCCATAAACTCAGGATGTACTGGCGATAACTGGAACCAAGAACCGG > NC_000913/2116782‑2116968
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
