Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,190,051 |
A→G |
G64G (GGT→GGC) |
yehD ← |
putative fimbrial‑like protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,190,051 | 0 | A | G | 100.0%
| 595.0
/ NA
| 184 | G64G (GGT→GGC) | yehD | putative fimbrial‑like protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (78/106); total (78/106) |
Only 100 of 185 total aligned reads displayed.
TTTACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTACCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTCTGCAATATT > NC_000913/2189962‑2190140
|
tttACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCt < 2:5284149/93‑1 (MQ=255)
ttACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCtt > 2:1577114/1‑93 (MQ=255)
acacCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCa > 2:5174912/1‑93 (MQ=255)
cacCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCaa > 1:5466255/1‑93 (MQ=255)
cacCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCaa > 1:3644661/1‑93 (MQ=255)
cacCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCAGCATAGGTAGAATATTTAGCTTTGCCTTCaa < 1:1248160/93‑1 (MQ=255)
acCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCaaa > 1:1811863/1‑93 (MQ=255)
acCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCaaa < 1:3480430/93‑1 (MQ=255)
ccAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAg > 1:3053651/1‑93 (MQ=255)
cAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGa > 2:5535611/1‑93 (MQ=255)
cAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGa > 1:3876883/1‑93 (MQ=255)
cAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGa < 1:3097468/93‑1 (MQ=255)
aGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGac < 1:5229120/93‑1 (MQ=255)
aGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGac > 2:2637332/1‑93 (MQ=255)
gCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGaca > 2:4128932/1‑93 (MQ=255)
gCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGaca > 1:5198973/1‑93 (MQ=255)
gCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGaca < 2:4172785/93‑1 (MQ=255)
cAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGacac < 2:1356070/93‑1 (MQ=255)
cAACTTCTTTCGGGAGTCTAATTTTTACCATCCTGGTGGTTACACCTACTGCACCATCATAGGTAGAATATTTGGCTTTGCCTTCAAAGacac < 2:5110017/93‑1 (MQ=255)
aaCTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACt > 1:1752621/1‑93 (MQ=255)
aaCTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACt > 2:6141538/1‑93 (MQ=255)
aaCTTCTTTCGGGCAGCTAATTTTTAACATGATGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACt < 1:1660209/93‑1 (MQ=255)
cttcttTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACtgg < 2:717900/93‑1 (MQ=255)
ttcttTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACtggt < 2:193525/93‑1 (MQ=255)
tcttTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACtggtt < 1:1383108/93‑1 (MQ=255)
tcttTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACtggtt < 1:2776774/93‑1 (MQ=255)
tcttTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACtggtt < 1:8726/93‑1 (MQ=255)
tcttTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACtggtt > 2:2065122/1‑93 (MQ=255)
tcttTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACtggtt > 2:1223341/1‑93 (MQ=255)
tcttTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACtggtt > 2:6293552/1‑93 (MQ=255)
cttTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACtggttg < 2:1847056/93‑1 (MQ=255)
tttCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACtggttgg > 1:5956100/1‑93 (MQ=255)
tttCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACtggttgg < 1:4844861/93‑1 (MQ=255)
tttCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACtggttgg > 1:4477774/1‑93 (MQ=255)
tttCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACtggttgg < 1:124714/93‑1 (MQ=255)
tCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTa < 2:876979/93‑1 (MQ=255)
tCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTa < 1:3674129/93‑1 (MQ=255)
cGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTAc > 1:230406/1‑93 (MQ=255)
cGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTAc < 2:541573/93‑1 (MQ=255)
cGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTAc < 1:2540323/93‑1 (MQ=255)
gggCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACa < 2:4878451/93‑1 (MQ=255)
ggCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAg < 2:1122709/93‑1 (MQ=255)
gCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGt < 1:1514718/93‑1 (MQ=255)
gCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGt > 2:4844381/1‑93 (MQ=255)
cAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTc < 2:5955205/93‑1 (MQ=255)
cAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTc < 2:1027536/93‑1 (MQ=255)
aGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCg < 1:5492749/93‑1 (MQ=255)
aGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCg < 2:5287492/93‑1 (MQ=255)
gCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCgg > 2:4277240/1‑93 (MQ=255)
gCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCgg > 1:4109093/1‑93 (MQ=255)
cTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGc < 2:5626873/93‑1 (MQ=255)
tAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCa < 1:5046483/93‑1 (MQ=255)
tAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCa < 2:3806518/93‑1 (MQ=255)
aaTTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCat < 1:6139025/93‑1 (MQ=255)
tttttAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCatat > 2:3791687/1‑93 (MQ=255)
ttttAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATAtt < 2:4927552/93‑1 (MQ=255)
tttAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTa < 2:5495957/93‑1 (MQ=255)
tttAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTa > 2:5602815/1‑93 (MQ=255)
ttAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTaa > 1:3275605/1‑93 (MQ=255)
aaCATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAAta < 2:4583027/93‑1 (MQ=255)
aaCATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAAta > 1:5552632/1‑93 (MQ=255)
aaCATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAAta < 2:3131606/93‑1 (MQ=255)
aaCATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAAta < 2:3254224/93‑1 (MQ=255)
atgatgCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAAtactt > 2:1137608/1‑93 (MQ=255)
tgctgcTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAAtactta > 1:2214320/1‑93 (MQ=255)
ctgctgGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAAtacttact < 2:5372873/93‑1 (MQ=255)
ctgctgGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAAtacttact < 1:902316/93‑1 (MQ=255)
gctgGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGa > 2:4381362/1‑93 (MQ=255)
tgGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAAt > 2:4696622/1‑93 (MQ=255)
cggTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAAt < 1:4262977/92‑1 (MQ=255)
ggTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATc < 1:3895663/93‑1 (MQ=255)
ggTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATc < 2:358736/93‑1 (MQ=255)
ttACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATcac < 1:2659813/93‑1 (MQ=255)
acacCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATcacca < 1:1967426/93‑1 (MQ=255)
acacCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATcacca < 2:3396617/93‑1 (MQ=255)
acacCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATcacca < 2:1849941/93‑1 (MQ=255)
ccGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCAccc < 1:5697264/93‑1 (MQ=255)
cGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCg < 2:3330037/93‑1 (MQ=255)
aCTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCt > 1:2680190/1‑93 (MQ=255)
aCTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAAACACCACCCGCt < 2:172032/93‑1 (MQ=255)
tGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTc > 1:6066978/1‑93 (MQ=255)
gCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCg > 1:3801689/1‑93 (MQ=255)
atcatcatAGGTAGAATATTTAGCTTGACATTCAAAGACACTGGTTGGTACAGTCGGCATATTAATGCTTCCTGAATCACCACCCGCTTCGaa < 2:1281924/93‑1 (MQ=255)
tcatcatAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAAt > 2:2415176/1‑93 (MQ=255)
atcatAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAAttt < 1:4718277/93‑1 (MQ=255)
tcatAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTa > 1:5381464/1‑93 (MQ=255)
tAGGTAGAATATTTAGCTTTGGCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTacac > 1:5653397/1‑93 (MQ=255)
tAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTacac < 2:2256322/93‑1 (MQ=255)
tAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTacac < 2:3382898/93‑1 (MQ=255)
aGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACg > 2:6081525/1‑93 (MQ=255)
aGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACg < 2:6238444/93‑1 (MQ=255)
aGGTAGAAGATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATAATTACTGAATCACCACCCGCTTCGAATTTACACg > 2:6141446/1‑93 (MQ=255)
aGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGgaga < 2:2976068/93‑1 (MQ=255)
gAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGAt > 2:5776250/1‑93 (MQ=255)
atatTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTc < 1:2812425/93‑1 (MQ=255)
atatTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTc < 2:3356043/93‑1 (MQ=255)
atTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTCTg < 2:1490891/93‑1 (MQ=255)
tttAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTCTGc > 2:1755091/1‑93 (MQ=255)
ttAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTCTGCa < 2:286120/93‑1 (MQ=255)
aGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTCTGCAat > 2:739160/1‑93 (MQ=255)
|
TTTACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTACCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTCTGCAATATT > NC_000913/2189962‑2190140
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGTTTTACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTACCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTCTGCAATATTCCCC > NC_000913/2189958‑2190144
|
GAGTTTTACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTG < SRR4302533.2310346/94‑1 (MQ=60)
GAGTTTTACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTG < SRR4302533.1828203/94‑1 (MQ=60)
GAGTTTTACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTG < SRR4302533.4053719/94‑1 (MQ=60)
AGTTTTACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGC > SRR4302533.2620452/1‑94 (MQ=60)
TTTACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTT < SRR4302533.5576184/94‑1 (MQ=60)
TTTACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTT > SRR4302533.350532/1‑94 (MQ=60)
TACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCA < SRR4302533.1567827/94‑1 (MQ=60)
ACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAA > SRR4302533.3667072/1‑94 (MQ=60)
ACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAA > SRR4302533.3351766/1‑94 (MQ=60)
ACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAA > SRR4302533.5051906/1‑94 (MQ=60)
ACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAA > SRR4302533.5499201/1‑94 (MQ=60)
CACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAA > SRR4302533.1822933/1‑94 (MQ=60)
CACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCAGCATAGGTAGAATATTTAGCTTTGCCTTCAAA < SRR4302533.1255618/94‑1 (MQ=60)
ACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAG < SRR4302533.3501902/94‑1 (MQ=60)
ACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAG > SRR4302533.3072357/1‑94 (MQ=60)
ACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAG < SRR4302533.5809167/94‑1 (MQ=60)
CCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGA > SRR4302533.3900544/1‑94 (MQ=60)
CAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGAC < SRR4302533.3116511/94‑1 (MQ=60)
CAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGAC < SRR4302533.511577/94‑1 (MQ=60)
AGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACA < SRR4302533.5260575/94‑1 (MQ=60)
AGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACA > SRR4302533.5230321/1‑94 (MQ=60)
GCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACAC > SRR4302533.5330308/1‑94 (MQ=60)
CAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACT > SRR4302533.1763297/1‑94 (MQ=60)
CAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACT > SRR4302533.4374724/1‑94 (MQ=60)
AACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTG > SRR4302533.12878/1‑94 (MQ=60)
AACTTCTTTCGGGCAGCTAATTTTTAACATGATGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTG < SRR4302533.1670248/94‑1 (MQ=60)
CTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGT < SRR4302533.4874053/94‑1 (MQ=60)
TCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTG < SRR4302533.2793833/94‑1 (MQ=60)
TCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTG < SRR4302533.1391433/94‑1 (MQ=60)
TCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTG < SRR4302533.8804/94‑1 (MQ=60)
TCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGCAGAATATTTAGCTTTGCATTCAAAGACACTGTTTG > SRR4302533.2687277/1‑94 (MQ=60)
CTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGG > SRR4302533.4504868/1‑94 (MQ=60)
CTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGG > SRR4302533.5992129/1‑94 (MQ=60)
TTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGT < SRR4302533.4874225/94‑1 (MQ=60)
TTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGT < SRR4302533.125497/94‑1 (MQ=60)
TCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTAC > SRR4302533.231834/1‑94 (MQ=60)
TCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTAC < SRR4302533.3696711/94‑1 (MQ=60)
CGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACA < SRR4302533.2555960/94‑1 (MQ=60)
CGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACA < SRR4302533.5675333/94‑1 (MQ=60)
GGNANNNANTNTTTAACATNCNNNTGGTTACACCGACTGCATCATNATAGGTAGAATATTTAGCTTTGCCTTCAAANACACTGGTTGGTACAGT < SRR4302533.4545671/94‑1 (MQ=60)
GCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTC < SRR4302533.6069318/94‑1 (MQ=60)
GCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTC < SRR4302533.1523842/94‑1 (MQ=60)
AGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGG > SRR4302533.6160648/1‑94 (MQ=60)
AGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGG < SRR4302533.5525881/94‑1 (MQ=60)
AGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGG > SRR4302533.4134075/1‑94 (MQ=60)
TAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCAT < SRR4302533.5077010/94‑1 (MQ=60)
AATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATA < SRR4302533.6176003/94‑1 (MQ=60)
TTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAA > SRR4302533.5034699/1‑94 (MQ=60)
TTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAA > SRR4302533.3295828/1‑94 (MQ=60)
TTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAAT < SRR4302533.4182162/94‑1 (MQ=60)
TAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATA > SRR4302533.5586164/1‑94 (MQ=60)
ATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTA > SRR4302533.2227985/1‑94 (MQ=60)
TGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTAC < SRR4302533.1404634/94‑1 (MQ=60)
GCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACT < SRR4302533.2901994/94‑1 (MQ=60)
CTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTG < SRR4302533.907607/94‑1 (MQ=60)
GCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAA < SRR4302533.1701352/94‑1 (MQ=60)
CTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAAT < SRR4302533.3681869/94‑1 (MQ=60)
TGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATC < SRR4302533.5710027/94‑1 (MQ=60)
CGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATC < SRR4302533.4288658/94‑1 (MQ=60)
GGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCA < SRR4302533.3919432/94‑1 (MQ=60)
TTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACC < SRR4302533.2676148/94‑1 (MQ=60)
ACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCAC < SRR4302533.1979449/94‑1 (MQ=60)
CCGACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCG < SRR4302533.5731679/94‑1 (MQ=60)
GACTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCT > SRR4302533.2696615/1‑94 (MQ=60)
CTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTC > SRR4302533.3085816/1‑94 (MQ=60)
CTGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTC > SRR4302533.6103694/1‑94 (MQ=60)
TGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCG < SRR4302533.5252724/94‑1 (MQ=60)
TGCATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCG > SRR4302533.3824955/1‑94 (MQ=60)
ATCATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAAT > SRR4302533.3971978/1‑94 (MQ=60)
CATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTT < SRR4302533.3871197/94‑1 (MQ=60)
ATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTA < SRR4302533.4746889/94‑1 (MQ=60)
ATCATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTA > SRR4302533.5413796/1‑94 (MQ=60)
ATAGGTAGAATATTTAGCTTTGGCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACAC > SRR4302533.5687568/1‑94 (MQ=60)
ATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACAC < SRR4302533.257432/94‑1 (MQ=60)
ATAGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACAC > SRR4302533.2155116/1‑94 (MQ=60)
AGGTAGAATATTTAGCTTTGCCTTCAAAGACGCTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGG < SRR4302533.2522556/94‑1 (MQ=60)
AGGTAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGG > SRR4302533.1779396/1‑94 (MQ=60)
TAGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGA < SRR4302533.5487132/94‑1 (MQ=60)
AGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGAT > SRR4302533.3901472/1‑94 (MQ=60)
AGAATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGAT < SRR4302533.87886/94‑1 (MQ=60)
AATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTC < SRR4302533.2273833/94‑1 (MQ=60)
ATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTCT < SRR4302533.2829736/94‑1 (MQ=60)
ATATTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTCT < SRR4302533.2708276/94‑1 (MQ=60)
TTTAGCTTTGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTCTGCA > SRR4302533.3234761/1‑94 (MQ=60)
TGCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTCTGCAATATTCCC < SRR4302533.5370997/94‑1 (MQ=60)
GCCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTCTGCAATATTCCCC > SRR4302533.548411/1‑94 (MQ=60)
|
GAGTTTTACACCAGCAACTTCTTTCGGGCAGCTAATTTTTAACATGCTGCTGGTTACACCGACTGCATCATCATAGGTAGAATATTTAGCTTTACCTTCAAAGACACTGGTTGGTACAGTCGGCATATTAATACTTACTGAATCACCACCCGCTTCGAATTTACACGGAGATTCTGCAATATTCCCC > NC_000913/2189958‑2190144
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
