Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,373,938 |
(C)5→6 |
coding (45/963 nt) |
menC ← |
o‑succinylbenzoyl‑CoA synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,373,933 | 1 | . | C | 96.7%
| 656.6
/ 12.6
| 214 | coding (50/963 nt) | menC | o‑succinylbenzoyl‑CoA synthase |
| Reads supporting (aligned to +/- strand): ref base . (0/7); new base C (102/105); total (102/112) |
| Fisher's exact test for biased strand distribution p-value = 1.48e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 238 total aligned reads displayed.
GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCA‑CCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACG > NC_000913/2373841‑2374020
|
tGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAacca‑c > 1:978357/1‑93 (MQ=255)
ggggAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAacca‑cc < 2:3997724/93‑1 (MQ=255)
gggAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCA‑ccc > 1:2344216/1‑93 (MQ=255)
ggAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCA‑ccc‑c > 1:5682419/1‑93 (MQ=255)
ggAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCA‑ccc‑c < 1:4587400/93‑1 (MQ=255)
gagaTCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCA‑ccc‑cc < 1:2576453/93‑1 (MQ=255)
aTCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCA‑ccc‑cccgc > 2:2014244/1‑90 (MQ=255)
tcCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTc < 1:5657670/93‑1 (MQ=255)
tcCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTc < 2:3832629/93‑1 (MQ=255)
ccccccACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTcc > 1:111523/1‑93 (MQ=255)
ccccACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCAt > 1:4484377/1‑93 (MQ=255)
ccccACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGACCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCA‑CCCACCGCGTCCAt > 1:1745163/1‑93 (MQ=255)
cccACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATg < 1:6012586/93‑1 (MQ=255)
cccACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATg < 1:836280/93‑1 (MQ=255)
ccACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATgg < 2:4497969/93‑1 (MQ=255)
ccACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGCCCATgg > 2:1284547/1‑93 (MQ=255)
cACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATggg > 1:3334122/1‑93 (MQ=255)
cACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGCCCCTggg > 2:2480677/1‑93 (MQ=255)
cccTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGa > 2:4074618/1‑93 (MQ=255)
cccTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGa > 2:2165975/1‑93 (MQ=255)
cTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATc < 2:5196210/93‑1 (MQ=255)
cTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATc > 1:908949/1‑93 (MQ=255)
cTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATc < 2:1073747/93‑1 (MQ=255)
tCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTg < 1:3848839/93‑1 (MQ=255)
tCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGGTTTTAACCGCCTGTCGCGCAGAACCA‑CCCGCCGCGTCCATGGGGATCTg > 2:5696104/1‑93 (MQ=255)
gcgcTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGcc < 2:2314460/93‑1 (MQ=255)
cgcTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCa < 2:2757599/93‑1 (MQ=255)
cTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGc > 2:5901377/1‑93 (MQ=255)
gCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGt > 2:4377655/1‑93 (MQ=255)
gCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGt > 1:3722607/1‑93 (MQ=255)
ccTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGta < 2:3147434/93‑1 (MQ=255)
ccTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGta > 2:4946399/1‑93 (MQ=255)
cTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGtat > 1:752851/1‑93 (MQ=255)
cTTCACGCAGGAAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGTCGtat > 1:3170063/1‑93 (MQ=255)
tCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATAc < 2:2792796/93‑1 (MQ=255)
tCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATAc > 1:3151965/1‑93 (MQ=255)
cACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATAcc < 1:3892039/93‑1 (MQ=255)
cACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATAcc < 2:1366770/93‑1 (MQ=255)
cACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATAcc < 1:166214/93‑1 (MQ=255)
cACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATAcc < 2:4973411/93‑1 (MQ=255)
aCGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCt > 1:3396457/1‑93 (MQ=255)
cGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACATg > 2:1809920/1‑93 (MQ=255)
gCAGGCAAACATACAGCCCGTCGCGGTTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTgc < 2:6091146/93‑1 (MQ=255)
gCAGGCAAACATACAGCCCGTCGCGGTTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTgc < 1:5449955/93‑1 (MQ=255)
gCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTgc < 1:2156158/93‑1 (MQ=255)
cAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTgcg > 1:141172/1‑93 (MQ=255)
aGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTgcgc > 1:3072756/1‑93 (MQ=255)
gCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCCTGGGGGTCTGCCCGCGGTATACCTgcgcgc > 2:4322748/1‑93 (MQ=255)
gCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTgcgcgc < 1:2733758/93‑1 (MQ=255)
aaaCATCCAGCCCGCCGCGGTTTTTTAACCTCCTGTCGCCCAGACCCACCCC‑CCGCGCCCATGGGGATCTGCCAGCGGTATACCTGCCCGCTa < 2:4648926/93‑1 (MQ=255)
aaaCATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCACGGGGATCTGCCAGCGGTATACCTGCGCGCTa > 1:2102475/1‑93 (MQ=255)
aaCATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTAc > 2:4271344/1‑93 (MQ=255)
aaCATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTAc < 1:1808823/93‑1 (MQ=255)
cATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGc > 1:3514516/1‑93 (MQ=255)
aTACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCa > 2:2996138/1‑93 (MQ=255)
aTACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCa < 1:1227619/93‑1 (MQ=255)
aTACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCa > 2:1529003/1‑93 (MQ=255)
tACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCAt > 1:2820514/1‑93 (MQ=255)
aCAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATTGGGATCTGCCAGCGGTATACCTGCGCGCTACGCAtt > 2:3697753/1‑93 (MQ=255)
gCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACg < 1:1686812/93‑1 (MQ=255)
gCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACg > 2:3124608/1‑93 (MQ=255)
cccGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACgg < 2:601836/93‑1 (MQ=255)
ccGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGa > 1:1034548/1‑93 (MQ=255)
ccGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGa < 1:5037624/93‑1 (MQ=255)
ccGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGGCCATGGGGGTCTGCCAGCGGGATACCTGCGCGCTACCCATTTCggg > 2:5349235/1‑92 (MQ=255)
cGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGAt > 2:4900444/1‑93 (MQ=255)
tCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTc < 2:4840774/93‑1 (MQ=255)
tCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTc < 2:5053098/93‑1 (MQ=255)
cgcgGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTcc > 1:1763624/1‑93 (MQ=255)
gcgGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCg > 1:3645620/1‑93 (MQ=255)
cgGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGt < 1:1453139/93‑1 (MQ=255)
cgGGTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGt > 2:1895577/1‑93 (MQ=255)
ggTTTTTAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGttt > 2:4176250/1‑93 (MQ=255)
tttttAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTgt < 1:6197209/93‑2 (MQ=255)
tttttAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGa < 1:3469671/93‑1 (MQ=255)
tttttAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGa < 2:3744195/93‑1 (MQ=255)
ttttAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGaa > 1:289785/1‑93 (MQ=255)
ttgtAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGaa < 2:2685881/90‑1 (MQ=255)
tttAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAAt < 2:3365014/93‑1 (MQ=255)
tAACCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAAttt < 1:3769689/93‑1 (MQ=255)
aCCGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGc < 1:5149487/93‑1 (MQ=255)
ccGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCt < 1:33136/93‑1 (MQ=255)
ccGCCTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCt < 1:4026329/93‑1 (MQ=255)
ccTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGaa < 2:6289961/93‑1 (MQ=255)
ccTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGaa < 2:1624846/93‑1 (MQ=255)
cTGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAg < 2:4258634/93‑1 (MQ=255)
tGTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGt > 1:2607883/1‑93 (MQ=255)
gTCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTc < 1:4977738/93‑1 (MQ=255)
tCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCa < 1:3984021/93‑1 (MQ=255)
tCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCa < 1:6239603/93‑1 (MQ=255)
tCGCGCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCAAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCa < 1:4274239/93‑1 (MQ=255)
cgcgCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAg < 1:4790006/93‑1 (MQ=255)
cgcgCAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAg < 1:5530967/93‑1 (MQ=255)
gcgcAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAgg > 2:3638688/1‑93 (MQ=255)
gcAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCt > 1:3510531/1‑93 (MQ=255)
gcAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCt > 2:647776/1‑93 (MQ=255)
cAGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTg > 1:3264680/1‑93 (MQ=255)
aGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGTTGAAGTCAGGCTGa < 2:3437762/93‑1 (MQ=255)
aGAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGa > 1:1002091/1‑93 (MQ=255)
gAACCACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGAc > 2:5577077/1‑93 (MQ=255)
|
GTGGGGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGAACCA‑CCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACG > NC_000913/2373841‑2374020
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑A‑CCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGA > NC_000913/2373845‑2374031
|
GGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑A‑CCC‑CC < SRR4302533.4615188/94‑1 (MQ=60)
GAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑A‑CCC‑CCC < SRR4302533.2592304/94‑1 (MQ=60)
GAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑A‑CCC‑CCC < SRR4302533.1392970/94‑1 (MQ=60)
GAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑A‑CCC‑CCC < SRR4302533.3430837/94‑1 (MQ=60)
GATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑A‑CCC‑CCcgc > SRR4302533.1752515/1‑91 (MQ=60)
CTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTTTCGCGCAGA‑A‑CC‑A‑CCC‑CCcgcgac > SRR4302533.3282572/1‑88 (MQ=60)
TCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCC > SRR4302533.112229/1‑94 (MQ=60)
TCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCC < SRR4302533.5691857/94‑1 (MQ=60)
CCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCAT > SRR4302533.4511533/1‑94 (MQ=60)
CCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGACCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑A‑CCCACCGCGTCCAT > SRR4302533.1755778/1‑94 (MQ=60)
CCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATG > SRR4302533.5042971/1‑94 (MQ=60)
CCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATG < SRR4302533.360149/94‑1 (MQ=60)
CCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATG > SRR4302533.1712148/1‑94 (MQ=60)
CCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGG < SRR4302533.6049012/94‑1 (MQ=60)
CCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGG < SRR4302533.1762174/94‑1 (MQ=60)
CCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGG > SRR4302533.1228003/1‑94 (MQ=60)
CCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGG < SRR4302533.841179/94‑1 (MQ=60)
CCACCTTTCGCGCTCGCCTTCACGCAGCCATACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGG < SRR4302533.3015698/94‑1 (MQ=60)
CCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑GC‑ACCCC‑CCGCGTCCATGGG > SRR4302533.6051207/1‑94 (MQ=60)
CCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGG > SRR4302533.3354725/1‑94 (MQ=60)
CCCCTGCGCGCTCGCCTACACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGA < SRR4302533.178061/94‑1 (MQ=60)
CCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGAT < SRR4302533.4613345/94‑1 (MQ=60)
CCCTGCGCGCTCGCCGTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑T‑CCTC‑CCC‑CCGCGTCCATGGGGAT < SRR4302533.1480622/94‑1 (MQ=60)
CCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATC > SRR4302533.914280/1‑94 (MQ=60)
TCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGC < SRR4302533.3872342/94‑1 (MQ=60)
GCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCA < SRR4302533.40303/94‑1 (MQ=60)
CGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAG > SRR4302533.535378/1‑94 (MQ=60)
CGCTCGCCTACACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAG < SRR4302533.690771/94‑1 (MQ=60)
GCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGC > SRR4302533.3112436/1‑94 (MQ=60)
GCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGC < SRR4302533.3336146/94‑1 (MQ=60)
CTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCG < SRR4302533.1886755/94‑1 (MQ=60)
CTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCG > SRR4302533.2648912/1‑94 (MQ=60)
CTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCG < SRR4302533.3710677/94‑1 (MQ=60)
CGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGT > SRR4302533.3745449/1‑94 (MQ=60)
GCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTA > SRR4302533.5382951/1‑94 (MQ=60)
GCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTA > SRR4302533.614482/1‑94 (MQ=60)
CCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTAT > SRR4302533.919067/1‑94 (MQ=60)
CCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTAT > SRR4302533.757288/1‑94 (MQ=60)
CCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTAT > SRR4302533.5096516/1‑94 (MQ=60)
CCTTCACGCAGGAAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGTCGTAT > SRR4302533.3189576/1‑94 (MQ=60)
CTTCACGCAGGCAAACATACAGCCCGTCGCTGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATA < SRR4302533.3875071/94‑1 (MQ=60)
CTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATA < SRR4302533.788179/94‑1 (MQ=60)
TTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATAC > SRR4302533.3171343/1‑94 (MQ=60)
TTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATAC > SRR4302533.3534823/1‑94 (MQ=60)
TTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATAC > SRR4302533.2166798/1‑94 (MQ=60)
cttccgatctgctgtatCAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACC < SRR4302533.2592453/77‑1 (MQ=60)
CACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCT > SRR4302533.3417431/1‑94 (MQ=60)
CACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCT < SRR4302533.167268/94‑1 (MQ=60)
CACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCT < SRR4302533.3915794/94‑1 (MQ=60)
ACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCCTGGGGATCTGCCAGCGGTATACCTG > SRR4302533.3211068/1‑94 (MQ=60)
CGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGC < SRR4302533.1506059/94‑1 (MQ=60)
GCAGGCAAACATACAGCCCGTCGCGGTTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCG < SRR4302533.5482784/94‑1 (MQ=60)
GCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCG > SRR4302533.142075/1‑94 (MQ=60)
GCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCG < SRR4302533.2169432/94‑1 (MQ=60)
CAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGC < SRR4302533.3183389/94‑1 (MQ=60)
CAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGC > SRR4302533.3091619/1‑94 (MQ=60)
AGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCG > SRR4302533.2873867/1‑94 (MQ=60)
GCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCT < SRR4302533.2750526/94‑1 (MQ=60)
CAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCACGGGGATCTGCCAGCGGTATACCTGCGCGCTA > SRR4302533.2115442/1‑94 (MQ=60)
AACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACG < SRR4302533.1819828/94‑1 (MQ=60)
ACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGC > SRR4302533.3536181/1‑94 (MQ=60)
ATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCAT < SRR4302533.1234970/94‑1 (MQ=60)
ATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCAT > SRR4302533.6240646/1‑94 (MQ=60)
ATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCAT > SRR4302533.2837870/1‑94 (MQ=60)
ATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑A‑CCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATT < SRR4302533.3812034/94‑1 (MQ=60)
ACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTA < SRR4302533.2766332/94‑1 (MQ=60)
CAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATCGGGATCTGCCAGCGGTATATCTGCGCGCTACGCATTAA > SRR4302533.5506688/1‑94 (MQ=60)
AGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACG > SRR4302533.1685250/1‑94 (MQ=60)
AGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACG < SRR4302533.3999885/94‑1 (MQ=60)
GCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑ACCC‑C‑CCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGG < SRR4302533.698670/94‑1 (MQ=60)
GCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGG < SRR4302533.4099424/94‑1 (MQ=60)
GCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGG < SRR4302533.1697031/94‑1 (MQ=60)
CCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGA > SRR4302533.3511640/1‑94 (MQ=60)
CCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGA > SRR4302533.1040635/1‑94 (MQ=60)
CCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGAT > SRR4302533.3544143/1‑94 (MQ=60)
CCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGAT < SRR4302533.5068129/94‑1 (MQ=60)
GTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTC > SRR4302533.2304611/1‑94 (MQ=60)
TCGCGTGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCC < SRR4302533.5594399/94‑1 (MQ=60)
TCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCC < SRR4302533.3072977/94‑1 (MQ=60)
TCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCC > SRR4302533.1774363/1‑94 (MQ=60)
CGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCG > SRR4302533.3668033/1‑94 (MQ=60)
CGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTT < SRR4302533.1461904/94‑1 (MQ=60)
GGGTTTTTATCCGCCTGTCGCGCAGACC‑CC‑C‑CCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTT < SRR4302533.4406570/94‑1 (MQ=60)
TTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGTA < SRR4302533.6234388/94‑1 (MQ=60)
TTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAA < SRR4302533.3491089/94‑1 (MQ=60)
TTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAA > SRR4302533.291550/1‑94 (MQ=60)
TTTAACCCCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATT > SRR4302533.2632062/1‑94 (MQ=60)
TTAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTT < SRR4302533.2079334/94‑1 (MQ=60)
TAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTG < SRR4302533.3792800/94‑1 (MQ=60)
TAACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTG < SRR4302533.4625624/94‑1 (MQ=60)
ACCGCCTGTCGCGCAGA‑ACCC‑C‑CCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCT < SRR4302533.2446557/94‑1 (MQ=60)
ACCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCT < SRR4302533.5180599/94‑1 (MQ=60)
CCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTG < SRR4302533.4897884/94‑1 (MQ=60)
CCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTG < SRR4302533.4050839/94‑1 (MQ=60)
CCGCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTG < SRR4302533.33359/94‑1 (MQ=60)
GCCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAA < SRR4302533.4427291/94‑1 (MQ=60)
CCTGTCGCGCAGA‑ACCC‑C‑CCC‑CCGCGGCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAG < SRR4302533.2968876/94‑1 (MQ=60)
CCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAG < SRR4302533.938499/94‑1 (MQ=60)
CCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAG > SRR4302533.5716081/1‑94 (MQ=60)
CCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAG > SRR4302533.2559229/1‑94 (MQ=60)
CCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAG > SRR4302533.1589088/1‑94 (MQ=60)
CCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAG > SRR4302533.1124691/1‑94 (MQ=60)
CCTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAG < SRR4302533.101536/94‑1 (MQ=60)
CTGTCGCGCAGA‑G‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGT < SRR4302533.911114/94‑1 (MQ=60)
CTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGT > SRR4302533.2623898/1‑94 (MQ=60)
CTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGT < SRR4302533.3235444/94‑1 (MQ=60)
CTGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGGATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGT > SRR4302533.3752876/1‑94 (MQ=60)
TGTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGGTCTGCCAGCGGTCTAACCGCGCGCCACGCATTAATGATTCCGTTTGAATTTGCTGATGTC > SRR4302533.1117528/1‑94 (MQ=48)
GTCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCA < SRR4302533.5007923/94‑1 (MQ=60)
TCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAG < SRR4302533.4008280/94‑1 (MQ=60)
TCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAG < SRR4302533.6276967/94‑1 (MQ=60)
TCGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCAAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAG < SRR4302533.4299955/94‑1 (MQ=60)
CGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGG < SRR4302533.5564358/94‑1 (MQ=60)
CGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGG < SRR4302533.597136/94‑1 (MQ=60)
CGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGG < SRR4302533.4819023/94‑1 (MQ=60)
CGCGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGCATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGG > SRR4302533.334765/1‑94 (MQ=60)
CGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCT > SRR4302533.3532172/1‑94 (MQ=60)
CGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCT < SRR4302533.3307484/94‑1 (MQ=60)
CGCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCT < SRR4302533.1458138/94‑1 (MQ=60)
GCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTG > SRR4302533.3284822/1‑94 (MQ=60)
GCAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTG < SRR4302533.4009327/94‑1 (MQ=60)
CAGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGA > SRR4302533.1007942/1‑94 (MQ=60)
AGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGAC < SRR4302533.5685216/94‑1 (MQ=60)
AGA‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGAC > SRR4302533.3368365/1‑94 (MQ=60)
A‑A‑CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGT < SRR4302533.3503401/94‑1 (MQ=60)
CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTT < SRR4302533.2342187/94‑1 (MQ=60)
CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTT < SRR4302533.1852292/94‑1 (MQ=60)
CC‑ACCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTT < SRR4302533.6031957/94‑1 (MQ=60)
acCCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCT > SRR4302533.2925689/3‑94 (MQ=60)
C‑CCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTG > SRR4302533.645020/1‑94 (MQ=60)
C‑CCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTG < SRR4302533.3716602/94‑1 (MQ=60)
CC‑CCGCGTCCATGGGGATCTGCCAGCGGAATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGT > SRR4302533.2112416/1‑94 (MQ=60)
C‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTT < SRR4302533.6126725/94‑1 (MQ=60)
CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTG < SRR4302533.581172/94‑1 (MQ=60)
CGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGA > SRR4302533.5047631/1‑94 (MQ=60)
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GGAGATCTCCCCCCACCCTTCGCGCTCGCCTTCACGCAGGCAAACATACAGCCCGTCGCGGGTTTTTAACCGCCTGTCGCGCAGA‑A‑CC‑A‑CCC‑CCGCGTCCATGGGGATCTGCCAGCGGTATACCTGCGCGCTACGCATTACGGATTCCGTTTGAATTTGCTGAAGTCAGGCTGACGTTTCTGGTTGA > NC_000913/2373845‑2374031
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
