Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,423,067 |
T→C |
T63A (ACC→GCC) |
hisM ← |
HisM |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,423,067 | 0 | T | C | 99.6%
| 820.2
/ NA
| 251 | T63A (ACC→GCC) | hisM | HisM |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (124/126); minor base A (1/0); total (125/126) |
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 255 total aligned reads displayed.
ATTCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGTAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTACC > NC_000913/2422977‑2423155
|
aTTCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCaa < 2:4474313/93‑1 (MQ=255)
ttCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCaaa > 2:3788143/1‑93 (MQ=255)
ttCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCaaa > 1:1082232/1‑93 (MQ=255)
tCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAAt < 1:5254706/93‑1 (MQ=255)
cGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATa < 2:3962348/93‑1 (MQ=255)
cGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATa < 1:5846632/93‑1 (MQ=255)
gTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAAc > 1:3108661/1‑93 (MQ=255)
gTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAAc < 2:314600/93‑1 (MQ=255)
ttCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAAcc > 1:3899615/1‑93 (MQ=255)
ttCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAAcc < 2:5504488/93‑1 (MQ=255)
tCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGCAAAATATAGGCAAATAACCa > 2:1941678/1‑93 (MQ=255)
tCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCa > 1:6175110/1‑93 (MQ=255)
tCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCa > 2:2271441/1‑93 (MQ=255)
tCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATAGAGGCAAATAACCa > 1:3601487/1‑93 (MQ=255)
cccTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAg < 2:2420416/93‑1 (MQ=255)
ccTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGa > 2:3058818/1‑93 (MQ=255)
ttAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGAtt < 2:4024969/93‑1 (MQ=255)
ttAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGAtt > 1:4574428/1‑93 (MQ=255)
ttAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGAtt > 2:4215477/1‑93 (MQ=255)
aCAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGa > 2:3455588/1‑93 (MQ=255)
cAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGaa < 2:5720228/93‑1 (MQ=255)
cAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGaa < 2:1661735/93‑1 (MQ=255)
aaTCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGaaa > 2:2367092/1‑93 (MQ=255)
aTCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAAc > 2:2161197/1‑93 (MQ=255)
aTCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAAc < 2:5289600/93‑1 (MQ=255)
tctcAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACt < 2:5990314/93‑1 (MQ=255)
tcAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTgg > 1:2912089/1‑93 (MQ=255)
tcAAGCGTGTACATGCCGGAATAGAACACCAACAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTgg > 2:1190014/1‑93 (MQ=255)
cAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGa > 1:6209614/1‑93 (MQ=255)
aaGCGTGTACATGCCGTAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGAt < 2:5451441/93‑1 (MQ=255)
cGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGta < 2:3584214/93‑1 (MQ=255)
cGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGta < 1:5990878/93‑1 (MQ=255)
tgtACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGtatt < 1:4400274/93‑1 (MQ=255)
gtACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGtattt < 1:1488459/93‑1 (MQ=255)
tACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGGAGAATATAGGCGAATAACGCGCTTGGAAACTGGATGtattta > 2:156317/1‑93 (MQ=255)
tACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGtattta < 2:1237855/93‑1 (MQ=255)
cATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGtatttatt < 1:4215477/93‑1 (MQ=255)
aTGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATttatta < 1:4851819/93‑1 (MQ=255)
ccGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATTTAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTg > 1:930254/1‑93 (MQ=255)
ggAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGga < 1:499896/93‑1 (MQ=255)
ggAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGga > 1:5548174/1‑93 (MQ=255)
gAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGgag > 1:1808730/1‑93 (MQ=255)
aaTAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGgaga < 2:2972350/93‑1 (MQ=255)
aaTAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGgaga > 2:4262793/1‑93 (MQ=255)
aTAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGac > 2:695826/1‑93 (MQ=255)
aTAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGac < 1:1984489/93‑1 (MQ=255)
aTAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGac < 2:5818494/93‑1 (MQ=255)
tAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGaca < 2:2209780/93‑1 (MQ=255)
tAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGaca > 1:2569298/1‑93 (MQ=255)
aaGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGaca < 2:2056162/92‑1 (MQ=255)
aGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGacac > 1:3295261/1‑93 (MQ=255)
aGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGacac < 1:4949313/93‑1 (MQ=255)
aGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGacac < 2:4624544/93‑1 (MQ=255)
aaCACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGCAACTGGATGTATTTATTACTGGAGACACGa > 1:2362187/1‑93 (MQ=255)
acacCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGAc > 1:4081392/1‑93 (MQ=255)
acCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCa < 1:2659328/93‑1 (MQ=255)
ccAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCaa > 1:2119040/1‑93 (MQ=255)
cAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGAAAATAACCAGATTGGAAACTGGATGTATATATTACTGGAGACACGAACAAt > 2:1278761/1‑93 (MQ=255)
aGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATc > 2:810/1‑93 (MQ=255)
aCTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCa > 1:4752441/1‑93 (MQ=255)
aCTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCa < 2:616726/93‑1 (MQ=255)
cTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAg < 2:4535027/93‑1 (MQ=255)
cTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAg > 1:691304/1‑93 (MQ=255)
aaCATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGACTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGaaa < 1:1112736/93‑1 (MQ=255)
cATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACa < 2:5909042/93‑1 (MQ=255)
aTACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAg > 2:6243951/1‑93 (MQ=255)
aTACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAg < 1:5228932/93‑1 (MQ=255)
tACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAgc > 1:6258393/1‑93 (MQ=255)
tACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAgc < 1:2285441/93‑1 (MQ=255)
tACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAgc < 1:5118425/93‑1 (MQ=255)
aCAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAgcg > 1:760145/1‑93 (MQ=255)
cAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAgcgc < 1:1346971/93‑1 (MQ=255)
aGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGcc < 2:4920514/93‑1 (MQ=255)
aGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGcc > 2:3915566/1‑93 (MQ=255)
gcggcgTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCa > 2:6291259/1‑93 (MQ=255)
cggcgTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAg < 1:3742336/93‑1 (MQ=255)
ggcgTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAgg < 2:1128326/93‑1 (MQ=255)
gcgTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGa > 2:2611367/1‑93 (MQ=255)
gcgTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGa > 1:3504570/1‑93 (MQ=255)
cgTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGAc < 1:6031491/93‑1 (MQ=255)
gTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACt < 1:1706495/93‑1 (MQ=255)
tACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTc < 1:5913502/93‑1 (MQ=255)
aCCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTcc > 1:2220678/1‑93 (MQ=255)
aCCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTcc > 1:3207568/1‑93 (MQ=255)
aCCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTcc < 1:6100513/93‑1 (MQ=255)
cgAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCt > 2:3351393/1‑93 (MQ=255)
gAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTa > 1:5701213/1‑93 (MQ=255)
aaaaTATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATc > 2:4711590/1‑93 (MQ=255)
aaaaTATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATc < 2:1930990/93‑1 (MQ=255)
aaaaTATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATc < 1:1776282/93‑1 (MQ=255)
aaTATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCAc > 2:5128493/1‑93 (MQ=255)
aaTATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCAc > 2:5389959/1‑93 (MQ=255)
aaTATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCAc > 1:3897319/1‑93 (MQ=255)
aaTATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCAc > 2:3389627/1‑93 (MQ=255)
aaTATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCAc < 2:942986/93‑1 (MQ=255)
tataGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTa > 2:1443988/1‑93 (MQ=255)
ataGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTAc > 2:4990210/1‑93 (MQ=255)
ataGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTAc < 1:2811064/93‑1 (MQ=255)
ataGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTAc < 1:1253477/93‑1 (MQ=255)
taGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTAcc > 1:371789/1‑93 (MQ=255)
|
ATTCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGTAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTACC > NC_000913/2422977‑2423155
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAATTCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGTAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTACCGACAA > NC_000913/2422975‑2423160
|
GAATTCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCA < SRR4302533.1579427/94‑1 (MQ=60)
GAATTCGGTTCCCTTAAAAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCA < SRR4302533.2707818/94‑1 (MQ=60)
AATTCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAA < SRR4302533.3294200/94‑1 (MQ=60)
AATTCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAA > SRR4302533.2651372/1‑94 (MQ=60)
AATTCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAA > SRR4302533.3311728/1‑94 (MQ=60)
ATTCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAA > SRR4302533.1088617/1‑94 (MQ=60)
ATTCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAA < SRR4302533.2783584/94‑1 (MQ=60)
TTCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAAT < SRR4302533.1334050/94‑1 (MQ=60)
TCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATA < SRR4302533.1998859/94‑1 (MQ=60)
TCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATA < SRR4302533.5286273/94‑1 (MQ=60)
CGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAA < SRR4302533.5881978/94‑1 (MQ=60)
GGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAAC > SRR4302533.3127767/1‑94 (MQ=60)
GGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAAC > SRR4302533.2699603/1‑94 (MQ=60)
GGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAAC < SRR4302533.3647913/94‑1 (MQ=60)
GTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACC < SRR4302533.332998/94‑1 (MQ=60)
GTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACC > SRR4302533.3923411/1‑94 (MQ=60)
TTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCA > SRR4302533.6139691/1‑94 (MQ=60)
TTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCA > SRR4302533.6212215/1‑94 (MQ=60)
TTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATAGAGGCAAATAACCA > SRR4302533.3623649/1‑94 (MQ=60)
TCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAG > SRR4302533.1803661/1‑94 (MQ=60)
TCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAG > SRR4302533.498854/1‑94 (MQ=60)
CCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGAT < SRR4302533.1090610/94‑1 (MQ=60)
CCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGAT > SRR4302533.6253416/1‑94 (MQ=60)
CTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATT > SRR4302533.4602150/1‑94 (MQ=60)
TTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTG > SRR4302533.2312158/1‑94 (MQ=60)
ACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAA < SRR4302533.298543/94‑1 (MQ=60)
CAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAA < SRR4302533.1854807/94‑1 (MQ=60)
AATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAAC < SRR4302533.3742888/94‑1 (MQ=60)
AATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAAC < SRR4302533.2437295/94‑1 (MQ=60)
ATCTCAAGCGTGTACATGCCGGAATAGAACACCATCAACTGAACATACAGCGGCGTACCGCGAATAGTATAGGCAAATAACCAGATgcgcaacg > SRR4302533.3077320/1‑86 (MQ=60)
ATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACT > SRR4302533.3077319/1‑94 (MQ=60)
TCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTG < SRR4302533.6269877/94‑1 (MQ=60)
CTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGG > SRR4302533.4203668/1‑94 (MQ=60)
CTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGG > SRR4302533.5286098/1‑94 (MQ=60)
CTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGG < SRR4302533.3736926/94‑1 (MQ=60)
CTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGG > SRR4302533.2929963/1‑94 (MQ=60)
TCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGA > SRR4302533.497051/1‑94 (MQ=60)
TCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGA > SRR4302533.6246856/1‑94 (MQ=60)
CAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGAT > SRR4302533.3923062/1‑94 (MQ=60)
AAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATG > SRR4302533.5150354/1‑94 (MQ=60)
AAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATG < SRR4302533.1137977/94‑1 (MQ=60)
AAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATG > SRR4302533.6239558/1‑94 (MQ=60)
AGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGT > SRR4302533.3881437/1‑94 (MQ=60)
CGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTAT < SRR4302533.6027167/94‑1 (MQ=60)
GTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATT < SRR4302533.4355269/94‑1 (MQ=60)
GTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATT > SRR4302533.2295134/1‑94 (MQ=60)
TGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTT < SRR4302533.4426843/94‑1 (MQ=60)
GTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTA < SRR4302533.1497437/94‑1 (MQ=60)
GTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTA < SRR4302533.2188432/94‑1 (MQ=60)
CATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTA > SRR4302533.3359378/1‑94 (MQ=60)
CATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTA < SRR4302533.4240979/94‑1 (MQ=60)
CATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTA < SRR4302533.3888322/94‑1 (MQ=60)
ATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTAC < SRR4302533.4877040/94‑1 (MQ=60)
ATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTAC < SRR4302533.4881221/94‑1 (MQ=60)
TGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACT < SRR4302533.4510509/94‑1 (MQ=60)
GCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATTTAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTG > SRR4302533.935715/1‑94 (MQ=60)
GCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTG < SRR4302533.5227518/94‑1 (MQ=60)
GCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTG > SRR4302533.1583982/1‑94 (MQ=60)
GCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTG > SRR4302533.6322344/1‑94 (MQ=60)
CGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGA < SRR4302533.3614599/94‑1 (MQ=60)
CGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGA > SRR4302533.5581681/1‑94 (MQ=60)
CGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGA > SRR4302533.4326777/1‑94 (MQ=60)
GGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAG < SRR4302533.502871/94‑1 (MQ=60)
GGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAG > SRR4302533.1819735/1‑94 (MQ=60)
AATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGAC > SRR4302533.1369802/1‑94 (MQ=60)
ATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACA > SRR4302533.2585108/1‑94 (MQ=60)
ATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACA < SRR4302533.1996629/94‑1 (MQ=60)
TAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACAC < SRR4302533.5647840/94‑1 (MQ=60)
TAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACAC > SRR4302533.3315601/1‑94 (MQ=60)
TAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACAC < SRR4302533.6027809/94‑1 (MQ=60)
AGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACG < SRR4302533.4979288/94‑1 (MQ=60)
GAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGCAACTGGATGTATTTATTACTGGAGACACGA > SRR4302533.2376806/1‑94 (MQ=60)
AACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGAC > SRR4302533.4106238/1‑94 (MQ=60)
AACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGAC > SRR4302533.2927083/1‑94 (MQ=60)
AACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGAC < SRR4302533.732772/94‑1 (MQ=60)
ACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACC > SRR4302533.4059233/1‑94 (MQ=60)
CACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCA < SRR4302533.3185547/94‑1 (MQ=60)
ACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAA < SRR4302533.2675661/94‑1 (MQ=60)
ACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAA > SRR4302533.2132111/1‑94 (MQ=60)
ACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAA > SRR4302533.2285001/1‑94 (MQ=60)
CCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAAT > SRR4302533.2520515/1‑94 (MQ=60)
CAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATC > SRR4302533.4694524/1‑94 (MQ=60)
AGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCG > SRR4302533.1376930/1‑94 (MQ=60)
CAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCC < SRR4302533.718335/94‑1 (MQ=60)
AACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCA > SRR4302533.4781253/1‑94 (MQ=60)
ACTGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAG > SRR4302533.695390/1‑94 (MQ=60)
TGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAA > SRR4302533.4839056/1‑94 (MQ=60)
TGAACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAA > SRR4302533.5140121/1‑94 (MQ=60)
AACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAAC < SRR4302533.5872617/94‑1 (MQ=60)
AACATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGACTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAAC < SRR4302533.1119336/94‑1 (MQ=60)
CATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAG > SRR4302533.1172603/1‑94 (MQ=60)
CATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAG < SRR4302533.5358530/94‑1 (MQ=60)
ATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGC > SRR4302533.6295817/1‑94 (MQ=60)
ATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGC < SRR4302533.5260387/94‑1 (MQ=60)
ATACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGC < SRR4302533.1780410/94‑1 (MQ=60)
TACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCG < SRR4302533.5149351/94‑1 (MQ=60)
TACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCG < SRR4302533.2299588/94‑1 (MQ=60)
TACAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCG > SRR4302533.764618/1‑94 (MQ=60)
CAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCC < SRR4302533.1355077/94‑1 (MQ=60)
CAGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCC < SRR4302533.3227584/94‑1 (MQ=60)
AGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCA < SRR4302533.5895320/94‑1 (MQ=60)
AGCGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCA > SRR4302533.6165733/1‑94 (MQ=60)
CGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGG < SRR4302533.3765288/94‑1 (MQ=60)
CGGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGG < SRR4302533.5013603/94‑1 (MQ=60)
GGCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGA > SRR4302533.3526175/1‑94 (MQ=60)
GCGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGAC < SRR4302533.6080426/94‑1 (MQ=60)
CGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACT > SRR4302533.3933027/1‑94 (MQ=60)
CGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACT > SRR4302533.2231983/1‑94 (MQ=60)
CGTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACT < SRR4302533.6068046/94‑1 (MQ=60)
GTACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTC < SRR4302533.1716832/94‑1 (MQ=60)
TACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCC > SRR4302533.2234387/1‑94 (MQ=60)
TACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCC > SRR4302533.3227320/1‑94 (MQ=60)
TACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCC < SRR4302533.5949238/94‑1 (MQ=60)
ACCGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCG < SRR4302533.6137350/94‑1 (MQ=60)
CGCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCC < SRR4302533.1723977/94‑1 (MQ=60)
GCGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCT < SRR4302533.6049864/94‑1 (MQ=60)
CGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTA > SRR4302533.188719/1‑94 (MQ=60)
CGAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTA > SRR4302533.5735641/1‑94 (MQ=60)
GAAAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTAT < SRR4302533.858317/94‑1 (MQ=60)
AAAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCA < SRR4302533.1787096/94‑1 (MQ=60)
AAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCAC < SRR4302533.591874/94‑1 (MQ=60)
AAATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCAC > SRR4302533.3921100/1‑94 (MQ=60)
AATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACT > SRR4302533.4724769/1‑94 (MQ=60)
AATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACT > SRR4302533.5752322/1‑94 (MQ=60)
ATATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTA > SRR4302533.5451383/1‑94 (MQ=60)
ATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTACC > SRR4302533.374032/1‑94 (MQ=60)
ATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTACC < SRR4302533.1260972/94‑1 (MQ=60)
ATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTACC < SRR4302533.6009248/94‑1 (MQ=60)
ATAGGCAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTACC < SRR4302533.2828364/94‑1 (MQ=60)
CAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTACCGACAA > SRR4302533.284144/1‑94 (MQ=60)
|
GAATTCGGTTCCCTTAACAATCTCAAGCGTGTACATGCCGGAATAGAACACCAGCAACTGAACATACAGCGGCGTACCGCGAAAAATATAGGTAAATAACCAGATTGGAAACTGGATGTATTTATTACTGGAGACACGACCAATCGCCAGAAACAGCGCCAGGACTCCGCCTATCACTACCGACAA > NC_000913/2422975‑2423160
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
