Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,455,409 |
G→A |
R591C (CGT→TGT) |
b2341 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,455,409 | 0 | G | A | 99.5%
| 695.7
/ NA
| 204 | R591C (CGT→TGT) | b2341 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (89/114); minor base T (0/1); total (89/115) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 209 total aligned reads displayed.
GTTCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACGCCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGGCG > NC_000913/2455319‑2455498
|
gTTCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACAcc > 1:2629154/1‑93 (MQ=255)
ttCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACAccc < 1:5116325/93‑1 (MQ=255)
ttCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACAccc > 2:505979/1‑93 (MQ=255)
ttCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACAccc > 2:457595/1‑93 (MQ=255)
ttCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACAccc < 1:2121956/93‑1 (MQ=255)
tgcagcagCCGGCGGTGCGGAGATGCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACAccc < 2:4648393/91‑1 (MQ=255)
gCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCtttt > 2:5632537/1‑92 (MQ=255)
gCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTc < 2:689069/93‑1 (MQ=255)
gCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTc < 1:5162986/93‑1 (MQ=255)
gCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTc < 2:164613/93‑1 (MQ=255)
cAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCt < 2:128915/93‑1 (MQ=255)
cAACCTGCCGTGCGGAGATTCGCCCCTGGCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCt < 1:1213755/93‑1 (MQ=255)
aaCCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTg > 2:5700433/1‑93 (MQ=255)
aaCCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTg > 2:1638289/1‑93 (MQ=255)
aCCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGa > 1:3717282/1‑93 (MQ=255)
aCCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGa > 2:5916593/1‑93 (MQ=255)
gcggtgcggAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCCTTCTGACCAt > 1:2198417/1‑93 (MQ=255)
gtgcggAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATaaa < 2:1776223/93‑1 (MQ=255)
ggcggAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAg < 1:877934/92‑1 (MQ=255)
gcggAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGGTCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGa < 1:4440176/93‑1 (MQ=255)
cggAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGAt < 1:1382733/93‑1 (MQ=255)
agaTTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGa < 2:4613245/93‑1 (MQ=255)
gaTTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACATTAAAGATAGaa > 2:2484130/1‑93 (MQ=255)
aTTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGaaa < 1:6118618/93‑1 (MQ=255)
aTTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGaaa < 1:3877639/93‑1 (MQ=255)
ttCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATACAGATAGAAAc > 1:4010786/1‑93 (MQ=255)
tCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAAcc < 2:2579465/93‑1 (MQ=255)
tCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAAcc < 1:1670149/93‑1 (MQ=255)
gCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAAcccc < 2:3364864/93‑1 (MQ=255)
gCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAAcccc < 2:1037032/93‑1 (MQ=255)
gCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAAcccc < 1:1840039/93‑1 (MQ=255)
ccccTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCg < 1:2775544/93‑1 (MQ=255)
cccTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCgg > 2:4132934/1‑93 (MQ=255)
tGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCa > 1:1093122/1‑93 (MQ=255)
tGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCa > 1:3250310/1‑93 (MQ=255)
cccTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCAtt < 2:3799067/93‑1 (MQ=255)
cccTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCAtt < 2:203907/93‑1 (MQ=255)
ccTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCAttt > 2:3109148/1‑93 (MQ=255)
cTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCAtttt < 2:2439358/93‑1 (MQ=255)
cTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCAtttt > 2:151559/1‑93 (MQ=255)
ttGTGTGCCAATCAGCGGGTAAATGGCGGGATCGAACTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCAttttt > 1:2002833/1‑93 (MQ=255)
gtgtgCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTc < 1:1886759/93‑1 (MQ=255)
gtgtgCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTc < 1:1467410/93‑1 (MQ=255)
tgtgCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCt > 2:3580942/1‑93 (MQ=255)
tgCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGc > 1:964463/1‑93 (MQ=255)
cAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCtt < 2:5364591/93‑1 (MQ=255)
aaTCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCttt < 2:5549099/93‑1 (MQ=255)
aTCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTg > 1:2383510/1‑93 (MQ=255)
tCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGc < 1:46286/93‑1 (MQ=255)
cAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCg < 2:1654299/93‑1 (MQ=255)
gCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGAt < 2:109184/93‑1 (MQ=255)
gCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGAt < 2:1218008/93‑1 (MQ=255)
gctAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGAtcgt < 1:1630563/91‑1 (MQ=255)
tAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGAtcgtcg < 2:523758/93‑1 (MQ=255)
tAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGAtcgtcg > 1:1301046/1‑93 (MQ=255)
aaaTGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATcgtcgt < 1:2319891/93‑1 (MQ=255)
aaaTGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTACTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATcgtcgt < 1:2500110/93‑1 (MQ=255)
aTGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTc < 1:1269664/93‑1 (MQ=255)
tGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCa > 1:4908100/1‑93 (MQ=255)
cGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCaaaa < 2:2138347/93‑1 (MQ=255)
cGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCaaaa < 2:5040763/93‑1 (MQ=255)
gggATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAAt > 1:3361639/1‑93 (MQ=255)
gggATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAAt < 1:350382/93‑1 (MQ=255)
gATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTg > 2:6242880/1‑93 (MQ=255)
tCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTgaa < 1:2855717/93‑1 (MQ=255)
cGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTgaag < 2:5990464/93‑1 (MQ=255)
cGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTgaag < 1:422986/93‑1 (MQ=255)
gACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTgaaga < 2:4420151/93‑1 (MQ=255)
gACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTgaaga > 2:3193024/1‑93 (MQ=255)
gACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTgaaga > 2:886612/1‑93 (MQ=255)
aCCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTgaagaa < 2:4916024/93‑1 (MQ=255)
aCCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTgaagaa > 2:3286320/1‑93 (MQ=255)
cTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAaac > 2:765263/1‑93 (MQ=255)
cTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAaac < 1:5528824/93‑1 (MQ=255)
cTGTTTGTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAaac < 1:3945861/93‑1 (MQ=255)
tGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAaaca > 2:3549356/1‑93 (MQ=255)
tGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAaaca > 1:4266741/1‑93 (MQ=255)
tGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAaaca < 1:5403437/93‑1 (MQ=255)
tGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAaaca > 1:6013051/1‑93 (MQ=255)
ttttttGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAaacaac > 2:4983309/1‑93 (MQ=255)
ttttttGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAaacaac < 2:1441614/93‑1 (MQ=255)
tttttGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAacaaca < 1:2491987/93‑1 (MQ=255)
ttttGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACAt < 2:2812716/93‑1 (MQ=255)
ttttGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACAt < 2:3866032/93‑1 (MQ=255)
ttttGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACAt > 1:5807207/1‑93 (MQ=255)
tttGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACAtt > 1:4970593/1‑93 (MQ=255)
tttGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACAtt < 1:5843718/93‑1 (MQ=255)
ttGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACAttt < 1:3415042/93‑1 (MQ=255)
tGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTg < 1:5305161/93‑1 (MQ=255)
tGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTg < 1:2994185/93‑1 (MQ=255)
gCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGc > 2:3371334/1‑93 (MQ=255)
gCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATAGTCGTTCAAAATTGAAGAAACAACATTTGc > 1:6308348/1‑93 (MQ=255)
cTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCa < 2:3653684/93‑1 (MQ=255)
ttttACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAg < 2:4774924/93‑1 (MQ=255)
ttttACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAg < 1:1019848/93‑1 (MQ=255)
ttttACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAg < 2:450781/93‑1 (MQ=255)
tttACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAgg < 1:2057904/93‑1 (MQ=255)
ttACACCCTTTCTGACCATAAAGATAGAACCCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGgc < 1:4327006/93‑1 (MQ=255)
ttACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGgc < 1:3789948/93‑1 (MQ=255)
tACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGgcg < 1:1718879/93‑1 (MQ=255)
|
GTTCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACGCCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGGCG > NC_000913/2455319‑2455498
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACCGTTCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACGCCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGGCGCGC > NC_000913/2455316‑2455501
|
CCCGTTCAGCCACCTGCGGTGCGGAGGTTCGCCCCTTCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACA < SRR4302533.2825271/94‑1 (MQ=60)
CCCGTTCAGCAACCTGCGGTGCGGAGATTCCCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACA < SRR4302533.2825270/94‑1 (MQ=60)
ACCGTTCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACA < SRR4302533.4808036/94‑1 (MQ=60)
CCGTTCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACAC > SRR4302533.411464/1‑94 (MQ=60)
CCGTTCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACAC < SRR4302533.4235402/94‑1 (MQ=60)
CCGTTCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCCACCTGTTTTTTGCTTTTACAC > SRR4302533.1468503/1‑94 (MQ=60)
CGTTCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACC < SRR4302533.2656652/94‑1 (MQ=60)
CGTTCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACC > SRR4302533.2645308/1‑94 (MQ=60)
GTTCAGCACCCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCC < SRR4302533.2497962/94‑1 (MQ=60)
GTGCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCC < SRR4302533.231940/94‑1 (MQ=60)
TTCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCT < SRR4302533.5147244/94‑1 (MQ=60)
TTCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCT < SRR4302533.2135037/94‑1 (MQ=60)
TCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTT > SRR4302533.1068000/1‑94 (MQ=60)
AGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCATTTC > SRR4302533.4562191/1‑94 (MQ=60)
GCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCT < SRR4302533.5179188/94‑1 (MQ=60)
GCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCT < SRR4302533.5194160/94‑1 (MQ=60)
CAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTG < SRR4302533.3463431/94‑1 (MQ=60)
CAACCTGCCGTGCGGAGATTCGCCCCTGGCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTG < SRR4302533.1221048/94‑1 (MQ=60)
AACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGA > SRR4302533.1435619/1‑94 (MQ=60)
AACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGA > SRR4302533.3740100/1‑94 (MQ=60)
TGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCCTTCTGACCAT > SRR4302533.2211961/1‑94 (MQ=60)
CGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAA > SRR4302533.977490/1‑94 (MQ=60)
CGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAA < SRR4302533.1950422/94‑1 (MQ=60)
CGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAA > SRR4302533.1571140/1‑94 (MQ=60)
GGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAA > SRR4302533.6163691/1‑94 (MQ=60)
GGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAA > SRR4302533.5564836/1‑94 (MQ=60)
GGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAA < SRR4302533.3945361/94‑1 (MQ=60)
GTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAG > SRR4302533.5881608/1‑94 (MQ=60)
GGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGA < SRR4302533.883087/94‑1 (MQ=60)
GCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGGTCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGAT < SRR4302533.4467018/94‑1 (MQ=60)
GCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGAT < SRR4302533.4890403/94‑1 (MQ=60)
GCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAAAGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGAT > SRR4302533.3411408/1‑94 (MQ=60)
CGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATA < SRR4302533.1391057/94‑1 (MQ=60)
GGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAG < SRR4302533.5321733/94‑1 (MQ=60)
GAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGA < SRR4302533.1673978/94‑1 (MQ=60)
AGATTCGCCCCTGCCCTTGTGTGCCCATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAA > SRR4302533.1229936/1‑94 (MQ=60)
ATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATACAGATAGAAAC > SRR4302533.4035202/1‑94 (MQ=60)
ATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAAC < SRR4302533.6155519/94‑1 (MQ=60)
ATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAAC < SRR4302533.3901305/94‑1 (MQ=60)
TCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCC < SRR4302533.2948689/94‑1 (MQ=60)
TCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCC < SRR4302533.1680240/94‑1 (MQ=60)
GCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCG > SRR4302533.537830/1‑94 (MQ=60)
GCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCG < SRR4302533.1851259/94‑1 (MQ=60)
CCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGG < SRR4302533.2792588/94‑1 (MQ=60)
CCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGG > SRR4302533.1310632/1‑94 (MQ=60)
CCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGC > SRR4302533.2032554/1‑94 (MQ=60)
CCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCC > SRR4302533.1790590/1‑94 (MQ=60)
CTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCA < SRR4302533.2377104/94‑1 (MQ=60)
CTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCA > SRR4302533.1099590/1‑94 (MQ=60)
CTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCA > SRR4302533.3270351/1‑94 (MQ=60)
CTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCA > SRR4302533.2903842/1‑94 (MQ=60)
CCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTT < SRR4302533.5462711/94‑1 (MQ=60)
CCTTGTGTGCCAATCAGCGGGGAAATTGCGGGATCGACCTGTTTTTTGCTTTTACACCCCTTCTAACCATTAAGATAGAAACCCACGCCATTTT > SRR4302533.1388252/1‑94 (MQ=60)
CTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGAACTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTT > SRR4302533.2015170/1‑94 (MQ=60)
GTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCT > SRR4302533.2572263/1‑94 (MQ=60)
GTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCT < SRR4302533.1476259/94‑1 (MQ=60)
GTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCT < SRR4302533.1898282/94‑1 (MQ=60)
GTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGC > SRR4302533.970125/1‑94 (MQ=60)
AATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTG < SRR4302533.4026134/94‑1 (MQ=60)
AATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTG > SRR4302533.2398244/1‑94 (MQ=60)
TCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCG < SRR4302533.46606/94‑1 (MQ=60)
CAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGA > SRR4302533.2749372/1‑94 (MQ=60)
CGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCG < SRR4302533.3323185/94‑1 (MQ=60)
GGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGT > SRR4302533.2201988/1‑94 (MQ=60)
GCTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTC < SRR4302533.1640440/94‑1 (MQ=60)
GTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCG > SRR4302533.1308871/1‑94 (MQ=60)
GTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCG > SRR4302533.3899474/1‑94 (MQ=60)
TAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGT > SRR4302533.1893619/1‑94 (MQ=60)
TAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGT < SRR4302533.2513630/94‑1 (MQ=60)
TAAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGT > SRR4302533.4233727/1‑94 (MQ=60)
AAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTT < SRR4302533.2334256/94‑1 (MQ=60)
AAATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTACTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTT < SRR4302533.2515532/94‑1 (MQ=60)
ATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCA < SRR4302533.1277262/94‑1 (MQ=60)
ATGGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCA > SRR4302533.4937837/1‑94 (MQ=60)
GGCGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAA > SRR4302533.363564/1‑94 (MQ=60)
CGGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAAT > SRR4302533.3382406/1‑94 (MQ=60)
GGTATCGACCTGTTTTTTGCTTTTGCACCCTTTCAGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATT < SRR4302533.760929/94‑1 (MQ=60)
GGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATT > SRR4302533.4258427/1‑94 (MQ=60)
GGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATT > SRR4302533.1704548/1‑94 (MQ=60)
GGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATT > SRR4302533.1910977/1‑94 (MQ=60)
GGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATT < SRR4302533.352516/94‑1 (MQ=60)
GGGATCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATT < SRR4302533.5872510/94‑1 (MQ=60)
TCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAACCCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAG < SRR4302533.2873289/94‑1 (MQ=60)
TCGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAG < SRR4302533.2873290/94‑1 (MQ=60)
CGACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGA < SRR4302533.425517/94‑1 (MQ=60)
GACCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAA < SRR4302533.6152466/94‑1 (MQ=60)
CCTGTTTTTTGCTTTTACTCCCTTTCCGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAAC < SRR4302533.965329/94‑1 (MQ=60)
CCTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAAC > SRR4302533.5716662/1‑94 (MQ=60)
CTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAGGAAACA > SRR4302533.501554/1‑94 (MQ=60)
CTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACA > SRR4302533.4292436/1‑94 (MQ=60)
CTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACA < SRR4302533.5562204/94‑1 (MQ=60)
CTGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACA > SRR4302533.6049480/1‑94 (MQ=60)
CTGTTTGTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACA < SRR4302533.3969924/94‑1 (MQ=60)
TGTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAA < SRR4302533.5435905/94‑1 (MQ=60)
GTTTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAAC < SRR4302533.3755527/94‑1 (MQ=60)
TTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACAT > SRR4302533.5842273/1‑94 (MQ=60)
TTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACAT < SRR4302533.444212/94‑1 (MQ=60)
TTTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACAT < SRR4302533.2507335/94‑1 (MQ=60)
TTTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATT > SRR4302533.5000730/1‑94 (MQ=60)
TTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTT > SRR4302533.4348176/1‑94 (MQ=60)
TTTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTT < SRR4302533.5879050/94‑1 (MQ=60)
TTGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTG < SRR4302533.3436143/94‑1 (MQ=60)
TGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGC < SRR4302533.5336954/94‑1 (MQ=60)
TGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGC > SRR4302533.208854/1‑94 (MQ=60)
TGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGC < SRR4302533.3012493/94‑1 (MQ=60)
TGCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATAGTCGTTCAAAATTGAAGAAACAACATTTGC > SRR4302533.6346209/1‑94 (MQ=60)
GCTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCA > SRR4302533.3033215/1‑94 (MQ=60)
CTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAG < SRR4302533.4281332/94‑1 (MQ=60)
CTTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAG < SRR4302533.1285619/94‑1 (MQ=60)
TTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGG < SRR4302533.1025841/94‑1 (MQ=60)
TTTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGG > SRR4302533.4973315/1‑94 (MQ=60)
TTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGGC < SRR4302533.2070594/94‑1 (MQ=60)
TTTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGGC < SRR4302533.1191938/94‑1 (MQ=60)
TTACACCCTTTCTGACCATAAAGATAGAACCCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGGCG < SRR4302533.4353071/94‑1 (MQ=60)
TTACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGGCG < SRR4302533.3813155/94‑1 (MQ=60)
TACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGGCGC < SRR4302533.1729302/94‑1 (MQ=60)
ACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGGCGCG < SRR4302533.2718003/94‑1 (MQ=60)
ACACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGGCGCG > SRR4302533.207859/1‑94 (MQ=60)
CACCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGGCGCGC > SRR4302533.6209831/1‑94 (MQ=60)
|
ACCGTTCAGCAACCTGCGGTGCGGAGATTCGCCCCTGCCCTTGTGTGCCAATCAGCGGGTAAATGGCGGGATCGACCTGTTTTTTGCTTTTACGCCCTTTCTGACCATAAAGATAGAAACCCCGGCCATTTTTTCTGCCTTTGCGATCGTCGTTCAAAATTGAAGAAACAACATTTGCAGGCGCGC > NC_000913/2455316‑2455501
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
