Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,470,298 A→G I37T (ATT→ACT)  b2356 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,470,2980AG100.0% 761.1 / NA 233I37T (ATT→ACT) b2356hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (116/117);  total (116/117)

Only 100 of 237 total aligned reads displayed.

GCGTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCC  >  NC_000913/2470208‑2470387
                                                                                          |                                                                                         
 cgTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTc                                                                                        <  2:2879969/93‑1 (MQ=255)
  gTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGGTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTcc                                                                                       >  1:193337/1‑93 (MQ=255)
   ttGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTccc                                                                                      >  1:1147378/1‑93 (MQ=255)
   ttGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTccc                                                                                      <  2:1625657/93‑1 (MQ=255)
   ttGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTccc                                                                                      >  2:2963603/1‑93 (MQ=255)
     gTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCa                                                                                    <  2:4274995/93‑1 (MQ=255)
      tCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAg                                                                                   >  1:3535684/1‑93 (MQ=255)
        ttCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGaa                                                                                 >  2:295328/1‑93 (MQ=255)
          ccGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGaaaa                                                                               <  1:2209116/93‑1 (MQ=255)
           cGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAAt                                                                              >  1:6224944/1‑93 (MQ=255)
            gCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAAtg                                                                             >  1:5105334/1‑93 (MQ=255)
            gCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAAtg                                                                             >  2:6018034/1‑93 (MQ=255)
            gCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAAAAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAAtg                                                                             >  2:4576495/1‑93 (MQ=255)
             cAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAAtgt                                                                            <  2:2100580/93‑1 (MQ=255)
              aGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAAtgtt                                                                           >  1:5340695/1‑93 (MQ=255)
              aGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAAtgtt                                                                           >  2:1635986/1‑93 (MQ=255)
                tgtAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAAtgttgt                                                                         >  2:3475804/1‑93 (MQ=255)
                tgtAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAAtgttgt                                                                         <  2:4818917/93‑1 (MQ=255)
                tgtAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAAtgttgt                                                                         <  1:4747482/93‑1 (MQ=255)
                tgtAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAAtgttgt                                                                         <  2:600605/93‑1 (MQ=255)
                 gtAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTc                                                                        >  2:4881216/1‑93 (MQ=255)
                 gtAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTc                                                                        >  2:4118045/1‑93 (MQ=255)
                 gtAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTc                                                                        >  1:2827316/1‑93 (MQ=255)
                 gtAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTc                                                                        >  1:2041449/1‑93 (MQ=255)
                  tAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTcc                                                                       <  2:2137549/93‑1 (MQ=255)
                  tAATACGCGGCACATTGGGCGTTATCACCATCAGTAAACAGATCCAGAACAAGCGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTcc                                                                       <  2:4537554/93‑1 (MQ=255)
                   aaTACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCg                                                                      <  1:519006/93‑1 (MQ=255)
                   aaTACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCg                                                                      <  1:2573094/93‑1 (MQ=255)
                     tACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGc                                                                    <  1:5950422/93‑1 (MQ=255)
                       cgcgTCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGt                                                                  <  2:2710459/93‑1 (MQ=255)
                       cgcgGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGt                                                                  <  1:5740732/93‑1 (MQ=255)
                       cgcgGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGGTGTCCGGCGt                                                                  >  2:3046448/1‑93 (MQ=255)
                        gcgGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTg                                                                 >  2:4372121/1‑93 (MQ=255)
                          ggCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTgcg                                                               <  1:3353956/93‑1 (MQ=255)
                          ggCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTgcg                                                               >  1:463253/1‑93 (MQ=255)
                          ggCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTgcg                                                               >  1:3132949/1‑93 (MQ=255)
                          ggCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTgcg                                                               >  1:3643783/1‑93 (MQ=255)
                           gCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTgcgc                                                              >  1:4720705/1‑93 (MQ=255)
                           gCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTgcgc                                                              >  2:3882790/1‑93 (MQ=255)
                            cacaTTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGcc                                                             >  1:4843764/1‑93 (MQ=255)
                              caTTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCAc                                                           >  2:3259329/1‑93 (MQ=255)
                              caTTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCAc                                                           <  2:3689207/93‑1 (MQ=255)
                              caTTTGGAGTTATCACCATCAGTAAACAGACCCAGAACAAACGGACCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCAc                                                           <  1:2473840/93‑1 (MQ=255)
                                tttGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTg                                                         <  2:6152966/93‑1 (MQ=255)
                                 ttGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGa                                                        >  2:1720978/1‑93 (MQ=255)
                                 ttGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGa                                                        <  2:3534148/93‑1 (MQ=255)
                                  tGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGAt                                                       <  1:972774/93‑1 (MQ=255)
                                  tGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGAt                                                       <  1:2008832/93‑1 (MQ=255)
                                  tGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGAt                                                       <  2:2318415/93‑1 (MQ=255)
                                   ggCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATc                                                      >  2:5493139/1‑93 (MQ=255)
                                   ggCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATc                                                      <  1:2623988/93‑1 (MQ=255)
                                     cGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGc                                                    <  2:1966207/93‑1 (MQ=255)
                                      gTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCgtc                                                   >  2:2489141/1‑91 (MQ=255)
                                       ttATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGccc                                                  >  1:2854138/1‑93 (MQ=255)
                                        tATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGGGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGcccc                                                 >  2:646317/1‑92 (MQ=255)
                                          tCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCAct                                               <  1:4325084/93‑1 (MQ=255)
                                          tCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCAct                                               >  2:6066464/1‑93 (MQ=255)
                                           cACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCActt                                              >  2:3963384/1‑93 (MQ=255)
                                              cATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCActtcct                                           <  2:1318873/93‑1 (MQ=255)
                                              cATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCActtcct                                           <  1:4265732/93‑1 (MQ=255)
                                                tCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCActtccttc                                         <  1:4889126/93‑1 (MQ=255)
                                                tCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCActtccttc                                         <  1:1764321/93‑1 (MQ=255)
                                                tCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGGGCGCCACTGATCGCCCActtccttc                                         <  2:3706227/93‑1 (MQ=255)
                                                tCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGGGGTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCAAattccttc                                         >  2:3328146/1‑93 (MQ=255)
                                                 cAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCa                                        <  2:734428/93‑1 (MQ=255)
                                                  aGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAg                                       >  1:5920690/1‑93 (MQ=255)
                                                   gTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGt                                      >  1:4604554/1‑93 (MQ=255)
                                                    tAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGtt                                     >  2:3026783/1‑93 (MQ=255)
                                                     aaaCAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTc                                    >  1:5019923/1‑93 (MQ=255)
                                                      aaCAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCa                                   <  2:5351826/93‑1 (MQ=255)
                                                      aaCAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCa                                   <  1:910113/93‑1 (MQ=255)
                                                       aCAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCAt                                  >  2:5080505/1‑93 (MQ=255)
                                                       aCAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCAt                                  <  2:879162/93‑1 (MQ=255)
                                                         aGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATgg                                <  2:1440857/93‑1 (MQ=255)
                                                         aGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATgg                                <  1:3279454/93‑1 (MQ=255)
                                                         aGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATgg                                <  2:5020063/93‑1 (MQ=255)
                                                          gATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATggg                               >  1:3806842/1‑93 (MQ=255)
                                                            tCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCt                             >  2:3068689/1‑93 (MQ=255)
                                                             ccAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTg                            <  2:3733618/93‑1 (MQ=255)
                                                             ccAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTg                            <  2:4200671/93‑1 (MQ=255)
                                                              cAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTgg                           <  2:4221794/93‑1 (MQ=255)
                                                               aGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGt                          <  1:1016037/93‑1 (MQ=255)
                                                               aGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGt                          >  2:3375354/1‑93 (MQ=255)
                                                                gAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGtt                         >  1:5298455/1‑93 (MQ=255)
                                                                 aaCAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGttt                        >  1:4796093/1‑93 (MQ=255)
                                                                  aCAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTg                       >  1:4769324/1‑93 (MQ=255)
                                                                   cAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGt                      <  1:1385182/93‑1 (MQ=255)
                                                                   cAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGt                      <  2:1384747/93‑1 (MQ=255)
                                                                        gggCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGc                 <  1:4215408/93‑1 (MQ=255)
                                                                           ccAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGc              <  1:3759847/93‑1 (MQ=255)
                                                                              aaCAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTcc           >  2:574849/1‑93 (MQ=255)
                                                                              aaCAGGGTGTTAGTTCACCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTcc           <  1:3696292/93‑1 (MQ=255)
                                                                               aCAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTcca          <  2:4511269/93‑1 (MQ=255)
                                                                                cAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTccac         <  1:1295198/93‑1 (MQ=255)
                                                                                 aGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTccacc        >  1:2362/1‑93 (MQ=255)
                                                                                 aGGGGGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTccacc        >  1:211314/1‑93 (MQ=255)
                                                                                  gggTGTTAGTTCCCCAGATAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTccacca       >  1:6024182/1‑93 (MQ=255)
                                                                                  gggTGTTAGTACCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTccacca       <  1:288104/93‑1 (MQ=255)
                                                                                       ttAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGcc  >  2:1009315/1‑93 (MQ=255)
                                                                                       ttAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGcc  <  2:2322602/93‑1 (MQ=255)
                                                                                          |                                                                                         
GCGTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCC  >  NC_000913/2470208‑2470387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGCGCGTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGG  >  NC_000913/2470205‑2470390
                                                                                             |                                                                                            
AGCGCGTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAG                                                                                              <  SRR4302533.2399317/94‑1 (MQ=60)
    CGTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCC                                                                                          >  SRR4302533.3049190/1‑94 (MQ=60)
    CGTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGGTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCC                                                                                          >  SRR4302533.194555/1‑94 (MQ=60)
     GTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCC                                                                                         >  SRR4302533.1154226/1‑94 (MQ=60)
        GTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAG                                                                                      >  SRR4302533.3557475/1‑94 (MQ=60)
        GTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAG                                                                                      <  SRR4302533.6012059/94‑1 (MQ=60)
         TCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGA                                                                                     >  SRR4302533.1914714/1‑94 (MQ=60)
           TTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAA                                                                                   <  SRR4302533.4787218/94‑1 (MQ=60)
           TTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAA                                                                                   >  SRR4302533.2043167/1‑94 (MQ=60)
             CCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAAT                                                                                 >  SRR4302533.6262243/1‑94 (MQ=60)
             CCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAAT                                                                                 <  SRR4302533.2222741/94‑1 (MQ=60)
              CGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATG                                                                                >  SRR4302533.5136173/1‑94 (MQ=60)
                CAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTT                                                                              >  SRR4302533.5372722/1‑94 (MQ=60)
                CAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTT                                                                              <  SRR4302533.922499/94‑1 (MQ=60)
                 AGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTG                                                                             >  SRR4302533.2336976/1‑94 (MQ=60)
                  GTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGT                                                                            <  SRR4302533.3693110/94‑1 (MQ=60)
                  GTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGT                                                                            <  SRR4302533.3171657/94‑1 (MQ=60)
                   TGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTC                                                                           >  SRR4302533.2054030/1‑94 (MQ=60)
                   TGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTC                                                                           <  SRR4302533.4776262/94‑1 (MQ=60)
                   TGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTC                                                                           >  SRR4302533.2844712/1‑94 (MQ=60)
                   TGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTC                                                                           >  SRR4302533.2813161/1‑94 (MQ=60)
                     TAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCG                                                                         <  SRR4302533.262461/94‑1 (MQ=60)
                      AATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGG                                                                        <  SRR4302533.522090/94‑1 (MQ=60)
                      AATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGG                                                                        >  SRR4302533.2479869/1‑94 (MQ=60)
                      AATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGG                                                                        <  SRR4302533.2588923/94‑1 (MQ=60)
                        TACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCG                                                                      <  SRR4302533.6013039/94‑1 (MQ=60)
                        TACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCG                                                                      <  SRR4302533.5986409/94‑1 (MQ=60)
                        TACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCG                                                                      <  SRR4302533.3307412/94‑1 (MQ=60)
                          CGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTG                                                                    <  SRR4302533.4763909/94‑1 (MQ=60)
                          CGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTG                                                                    <  SRR4302533.5775374/94‑1 (MQ=60)
                           GCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGC                                                                   >  SRR4302533.4918762/1‑94 (MQ=60)
                           GCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGC                                                                   >  SRR4302533.632493/1‑94 (MQ=60)
                            CGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCG                                                                  >  SRR4302533.3666186/1‑94 (MQ=60)
                            CGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCG                                                                  >  SRR4302533.3152210/1‑94 (MQ=60)
                            CGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCG                                                                  >  SRR4302533.466016/1‑94 (MQ=60)
                             GGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGC                                                                 >  SRR4302533.4749328/1‑94 (MQ=60)
                             GGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGC                                                                 <  SRR4302533.3374682/94‑1 (MQ=60)
                              GCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCC                                                                >  SRR4302533.4873121/1‑94 (MQ=60)
                                ACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCAC                                                              <  SRR4302533.2764103/94‑1 (MQ=60)
                                 CATTTGGAGTTATCACCATCAGTAAACAGACCCAGAACAAACGGACCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACT                                                             <  SRR4302533.2489095/94‑1 (MQ=60)
                                  ATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTG                                                            >  SRR4302533.4267939/1‑94 (MQ=60)
                                     TGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATC                                                         <  SRR4302533.3140948/94‑1 (MQ=60)
                                     TGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATC                                                         <  SRR4302533.2447814/94‑1 (MQ=60)
                                     TGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATC                                                         <  SRR4302533.2021205/94‑1 (MQ=60)
                                     TGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATC                                                         <  SRR4302533.4651207/94‑1 (MQ=60)
                                     TGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATC                                                         <  SRR4302533.978486/94‑1 (MQ=60)
                                      GGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCG                                                        >  SRR4302533.2870572/1‑94 (MQ=60)
                                      GGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCG                                                        <  SRR4302533.2640093/94‑1 (MQ=60)
                                      GGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCC                                                        >  SRR4302533.4818077/1‑94 (MQ=60)
                                       GCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGC                                                       <  SRR4302533.983132/94‑1 (MQ=60)
                                        CGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCC                                                      <  SRR4302533.6097529/94‑1 (MQ=60)
                                        CGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGAGTTAGTTCCCCAGACAATGTTGTCCGGCGTGCGCCACTGATCGCC                                                      >  SRR4302533.515426/1‑94 (MQ=60)
                                         GTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCC                                                     >  SRR4302533.2871700/1‑94 (MQ=60)
                                            ATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACT                                                  <  SRR4302533.1670281/94‑1 (MQ=60)
                                            ATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACT                                                  <  SRR4302533.2586694/94‑1 (MQ=60)
                                            ATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACT                                                  <  SRR4302533.4809755/94‑1 (MQ=60)
                                             TCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTT                                                 <  SRR4302533.4351137/94‑1 (MQ=60)
                                                CCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCT                                              >  SRR4302533.3782005/1‑94 (MQ=60)
                                                CCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCT                                              >  SRR4302533.4179703/1‑94 (MQ=60)
                                                 CATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTT                                             <  SRR4302533.4291420/94‑1 (MQ=60)
                                                  ATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCTCACTTCCTTC                                            >  SRR4302533.5184300/1‑94 (MQ=60)
                                                  ATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTC                                            <  SRR4302533.45468/94‑1 (MQ=60)
                                                   TCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCA                                           <  SRR4302533.4918750/94‑1 (MQ=60)
                                                   TCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCA                                           <  SRR4302533.1775064/94‑1 (MQ=60)
                                                   TCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCA                                           <  SRR4302533.5694537/94‑1 (MQ=60)
                                                    CAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAG                                          >  SRR4302533.5956476/1‑94 (MQ=60)
                                                     AGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGT                                         <  SRR4302533.4838673/94‑1 (MQ=60)
                                                     AGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGT                                         >  SRR4302533.4632451/1‑94 (MQ=60)
                                                     AGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGT                                         >  SRR4302533.1329174/1‑94 (MQ=60)
                                                       TAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTC                                       >  SRR4302533.5050326/1‑94 (MQ=60)
                                                       TAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTC                                       >  SRR4302533.4701282/1‑94 (MQ=60)
                                                        AAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCA                                      >  SRR4302533.2166778/1‑94 (MQ=60)
                                                         AACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCAT                                     <  SRR4302533.915451/94‑1 (MQ=60)
                                                           CAGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGG                                   <  SRR4302533.5949400/94‑1 (MQ=60)
                                                            AGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGG                                  >  SRR4302533.3830133/1‑94 (MQ=60)
                                                            AGATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGG                                  <  SRR4302533.3299700/94‑1 (MQ=60)
                                                             GGTCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGC                                 <  SRR4302533.2158659/94‑1 (MQ=60)
                                                              ATCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCT                                <  SRR4302533.6324724/94‑1 (MQ=60)
                                                               TCCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTG                               >  SRR4302533.2011304/1‑94 (MQ=60)
                                                                CCAGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGG                              >  SRR4302533.1079700/1‑94 (MQ=60)
                                                                  AGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCTCTTCCTTCAGTTCATGGGCTGGTT                            >  SRR4302533.1340257/1‑94 (MQ=60)
                                                                  AGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTT                            <  SRR4302533.1022010/94‑1 (MQ=60)
                                                                  AGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTT                            >  SRR4302533.4579185/1‑94 (MQ=60)
                                                                  AGAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTT                            >  SRR4302533.5330196/1‑94 (MQ=60)
                                                                   GAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTT                           >  SRR4302533.4825145/1‑94 (MQ=60)
                                                                   GAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTT                           <  SRR4302533.4664875/94‑1 (MQ=60)
                                                                   GAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTT                           >  SRR4302533.207724/1‑94 (MQ=60)
                                                                   GAACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTT                           <  SRR4302533.3536378/94‑1 (MQ=60)
                                                                    AACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTG                          >  SRR4302533.4798231/1‑94 (MQ=60)
                                                                     ACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGACAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGT                         >  SRR4302533.2004895/1‑94 (MQ=60)
                                                                     ACAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGT                         >  SRR4302533.1276702/1‑94 (MQ=60)
                                                                      CAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTT                        <  SRR4302533.1393517/94‑1 (MQ=60)
                                                                      CAAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTT                        <  SRR4302533.3797278/94‑1 (MQ=60)
                                                                       AAACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTC                       >  SRR4302533.3644154/1‑94 (MQ=60)
                                                                         ACGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCG                     <  SRR4302533.4337947/94‑1 (MQ=60)
                                                                          CGGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCCGGTTTGTTCCGC                    >  SRR4302533.2895562/1‑94 (MQ=60)
                                                                           GGGCCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCA                   <  SRR4302533.4240910/94‑1 (MQ=60)
                                                                              CCAAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCT                <  SRR4302533.3782895/94‑1 (MQ=60)
                                                                                AAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCC              >  SRR4302533.5249956/1‑94 (MQ=60)
                                                                                AAACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTCCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCC              <  SRR4302533.3695016/94‑1 (MQ=60)
                                                                                 AACAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCA             >  SRR4302533.5979099/1‑94 (MQ=60)
                                                                                 AACAGGGTGTTAGTTCACCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCA             <  SRR4302533.3718997/94‑1 (MQ=60)
                                                                                   CAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACC           <  SRR4302533.1302995/94‑1 (MQ=60)
                                                                                   CAGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACC           >  SRR4302533.2380/1‑94 (MQ=60)
                                                                                   CAGGGGGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACC           >  SRR4302533.212647/1‑94 (MQ=60)
                                                                                    AGGGTGTTAGTTCCCCAGATAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCA          >  SRR4302533.6060689/1‑94 (MQ=60)
                                                                                    AGGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCA          >  SRR4302533.3308779/1‑94 (MQ=60)
                                                                                     GGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAG         <  SRR4302533.4885807/94‑1 (MQ=60)
                                                                                     GGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAG         <  SRR4302533.5091916/94‑1 (MQ=60)
                                                                                     GGGTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAG         >  SRR4302533.5356362/1‑94 (MQ=60)
                                                                                     GGGTGTTAGTACCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAG         <  SRR4302533.289863/94‑1 (MQ=60)
                                                                                       GTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCG       >  SRR4302533.4931229/1‑94 (MQ=60)
                                                                                       GTGTTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGACCACTTCCTTCCGTTCATAGGATGGTTTGGTCCCCAGCTCCACCAGCG       >  SRR4302533.5734980/1‑94 (MQ=60)
                                                                                          TTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCT    >  SRR4302533.933424/1‑94 (MQ=60)
                                                                                          TTAGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCT    <  SRR4302533.4129015/94‑1 (MQ=60)
                                                                                            AGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGG  <  SRR4302533.5854855/94‑1 (MQ=60)
                                                                                            AGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGG  <  SRR4302533.2991680/94‑1 (MQ=60)
                                                                                            AGTTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGG  <  SRR4302533.3655594/94‑1 (MQ=60)
                                                                                            AGTTCACCAGAAAATGTTGTCCGCCGTGCTCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGG  <  SRR4302533.5506415/94‑1 (MQ=60)
                                                                                             |                                                                                            
AGCGCGTTGTCTTCCGCAGTGTAATACGCGGCACATTTGGCGTTATCACCATCAGTAAACAGATCCAGAACAAACGGGCCAAACAGGGTGTTAATTCCCCAGAAAATGTTGTCCGGCGTGCGCCACTGATCGCCCACTTCCTTCAGTTCATGGGCTGGTTTGTTCCGCAGCTCCACCAGCGCCTGG  >  NC_000913/2470205‑2470390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑