Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,472,861 T→C G270G (GGT→GGC)  b2360 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,472,8610TC100.0% 666.9 / NA 201G270G (GGT→GGC) b2360hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (88/113);  total (88/113)

Only 100 of 204 total aligned reads displayed.

GCTGGAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGTACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGAG  >  NC_000913/2472771‑2472949
                                                                                          |                                                                                        
gCTGGAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCAc                                                                                        >  2:5398341/1‑93 (MQ=255)
gCTGGAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCAc                                                                                        <  1:656195/93‑1 (MQ=255)
 cTGGAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACt                                                                                       <  2:3234860/93‑1 (MQ=255)
   ggAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACttt                                                                                     <  2:3346411/93‑1 (MQ=255)
   ggAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACttt                                                                                     >  2:4775984/1‑93 (MQ=255)
    gAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTc                                                                                    <  1:473611/93‑1 (MQ=255)
      aGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCAc                                                                                  >  2:533018/1‑93 (MQ=255)
          gTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGcc                                                                              >  1:194237/1‑93 (MQ=255)
            gCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTg                                                                            >  1:6198386/1‑93 (MQ=255)
             cAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGa                                                                           <  1:947831/93‑1 (MQ=255)
               ggAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGAtt                                                                         <  1:2290097/93‑1 (MQ=255)
               ggAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGAtt                                                                         >  2:4912058/1‑93 (MQ=255)
               ggAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGAtt                                                                         <  1:3387740/93‑1 (MQ=255)
                gAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGAttt                                                                        >  1:5535822/1‑93 (MQ=255)
                 aaGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTc                                                                       >  2:3982786/1‑93 (MQ=255)
                 aaGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTc                                                                       >  2:1246667/1‑93 (MQ=255)
                  aGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCa                                                                      >  1:337326/1‑93 (MQ=255)
                   gATATGGCTAACGAATTTCCTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCAt                                                                     >  1:6135026/1‑93 (MQ=255)
                    atatGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCAtt                                                                    >  2:3813400/1‑93 (MQ=255)
                    atatGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACCTTCACCGCCTGATTTCAtt                                                                    >  1:3801740/1‑93 (MQ=255)
                     tatGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTa                                                                   >  2:1643478/1‑93 (MQ=255)
                     tatGGCTAAAGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTa                                                                   >  1:1595995/1‑93 (MQ=255)
                      atGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCCCCGCCTGATTTCATTAc                                                                  <  2:6005683/93‑1 (MQ=255)
                      atGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTAc                                                                  <  1:6244837/93‑1 (MQ=255)
                      atGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTAc                                                                  <  1:3938309/93‑1 (MQ=255)
                         gCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGc                                                               >  1:5687954/1‑93 (MQ=255)
                         gCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGc                                                               <  2:4643264/93‑1 (MQ=255)
                         gCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGc                                                               >  1:5283082/1‑93 (MQ=255)
                           tAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCaa                                                             >  2:3432180/1‑93 (MQ=255)
                            aaCGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCaaa                                                            >  1:871191/1‑93 (MQ=255)
                             aCGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAAt                                                           <  2:795362/93‑1 (MQ=255)
                              cGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATg                                                          >  1:2651829/1‑93 (MQ=255)
                               gAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGc                                                         >  2:816330/1‑93 (MQ=255)
                                aaTTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGcc                                                        >  2:4041713/1‑93 (MQ=255)
                                aaTTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGcc                                                        <  1:2420052/93‑1 (MQ=255)
                                 aTTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGccc                                                       <  2:3007032/93‑1 (MQ=255)
                                  tttCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGcccc                                                      <  2:5604318/93‑1 (MQ=255)
                                  tttCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGcccc                                                      <  1:1743363/93‑1 (MQ=255)
                                  tttCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGcccc                                                      <  2:1967455/93‑1 (MQ=255)
                                  tgtCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGcccc                                                      <  2:2954630/91‑1 (MQ=255)
                                   ttCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCt                                                     <  2:2542342/93‑1 (MQ=255)
                                   ttCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCt                                                     <  2:2449608/93‑1 (MQ=255)
                                    tCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTg                                                    <  2:4999579/93‑1 (MQ=255)
                                    tCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTg                                                    <  2:4884574/93‑1 (MQ=255)
                                     cGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGc                                                   <  1:3481995/93‑1 (MQ=255)
                                      gTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCg                                                  >  1:520054/1‑93 (MQ=255)
                                       tGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCgg                                                 <  2:2670041/93‑1 (MQ=255)
                                        gATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCggg                                                >  2:5940610/1‑93 (MQ=255)
                                          tCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCggggg                                              <  2:705161/93‑1 (MQ=255)
                                          tCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCggggg                                              <  1:1503238/93‑1 (MQ=255)
                                           cTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGc                                             >  1:4578894/1‑93 (MQ=255)
                                            tGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCa                                            >  2:3672623/1‑93 (MQ=255)
                                                tgttgAGAAATTCAAAGACAGCAAAGTAGAACCCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTa                                        <  1:764650/93‑1 (MQ=255)
                                                tgttgAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTa                                        >  1:3111877/1‑93 (MQ=255)
                                                tgttgAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTa                                        <  1:870202/93‑1 (MQ=255)
                                                  ttgAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCTCTGCGGGGGCATTTATg                                      >  1:3273208/1‑93 (MQ=255)
                                                  ttgAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATg                                      <  2:4363194/93‑1 (MQ=255)
                                                    gagaAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGa                                    <  1:6002355/93‑1 (MQ=255)
                                                     agaAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGaa                                   <  2:116828/93‑1 (MQ=255)
                                                     agaAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGaa                                   >  1:2204358/1‑93 (MQ=255)
                                                     agaAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGaa                                   >  2:5793654/1‑93 (MQ=255)
                                                      gaAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGaaa                                  <  2:3646145/93‑1 (MQ=255)
                                                      gaAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGaaa                                  <  1:4009030/93‑1 (MQ=255)
                                                        aaTTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGaaatg                                <  2:6209595/93‑3 (MQ=255)
                                                        aaTTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACg                                >  2:4338994/1‑93 (MQ=255)
                                                         aTTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCGTTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGt                               <  1:964287/93‑1 (MQ=255)
                                                          ttCAAAGACAGCAGAGTAAAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCGCCTGCGGGGTCTTTTATGGAAACGTa                              <  2:1440435/93‑1 (MQ=255)
                                                           tCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTaa                             >  2:1754113/1‑93 (MQ=255)
                                                           tCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTaa                             >  1:2337159/1‑93 (MQ=255)
                                                            cAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAAt                            <  2:1404151/93‑1 (MQ=255)
                                                             aaaGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAAtt                           <  2:1388275/93‑1 (MQ=255)
                                                             aaaGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAAtt                           >  1:4642403/1‑93 (MQ=255)
                                                                gACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAAc                        <  1:387092/93‑1 (MQ=255)
                                                                    gCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCaa                    >  1:795604/1‑93 (MQ=255)
                                                                     cAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCaat                   >  1:4782173/1‑93 (MQ=255)
                                                                      aaaGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCaata                  <  1:2690448/93‑1 (MQ=255)
                                                                      aaaGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCaata                  >  2:2020964/1‑93 (MQ=255)
                                                                      aaaGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCaata                  <  1:4942470/93‑1 (MQ=255)
                                                                       aaGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCaataa                 >  2:5470931/1‑93 (MQ=255)
                                                                        aGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCaataat                >  2:2809984/1‑93 (MQ=255)
                                                                        aGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCaataat                >  2:4486/1‑93 (MQ=255)
                                                                         gTAGAAACCTTTATTGGCACTTTCACCGCCTGGTTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATc               >  1:5759261/1‑93 (MQ=255)
                                                                          tAGAAACCTTTATTGGCACTTGCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCa              <  2:4397152/93‑1 (MQ=255)
                                                                            gAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCAcc            >  2:2391662/1‑93 (MQ=255)
                                                                            aaaaCCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCAcc            <  2:2856344/92‑1 (MQ=255)
                                                                             aaaCCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCg           >  2:2997700/1‑93 (MQ=255)
                                                                             aaaCCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCg           <  1:4866536/93‑1 (MQ=255)
                                                                              aaCCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCgg          >  1:3757105/1‑93 (MQ=255)
                                                                               aCCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGa         >  2:1002996/1‑93 (MQ=255)
                                                                               aCCTTTATTGGCACTTTCACCGCCTGATGTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGa         <  2:867720/93‑1 (MQ=255)
                                                                                 cTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATg       <  2:1656782/93‑1 (MQ=255)
                                                                                 cTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATg       >  1:3517516/1‑93 (MQ=255)
                                                                                 cTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATg       >  1:3279411/1‑93 (MQ=255)
                                                                                  tttATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATgg      <  1:2930549/93‑1 (MQ=255)
                                                                                    tATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTg    >  2:544147/1‑93 (MQ=255)
                                                                                     aTTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGa   >  2:3168388/1‑93 (MQ=255)
                                                                                      ttGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGAg  <  1:1079305/93‑1 (MQ=255)
                                                                                      ttGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGAg  <  2:4160773/93‑1 (MQ=255)
                                                                                      ttGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGAg  <  2:829651/93‑1 (MQ=255)
                                                                                      ttGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGAGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGAg  <  1:2073780/93‑1 (MQ=255)
                                                                                          |                                                                                        
GCTGGAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGTACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGAG  >  NC_000913/2472771‑2472949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCAGCTGGAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGTACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGAGGGCT  >  NC_000913/2472768‑2472953
                                                                                             |                                                                                            
TCAGCTGGAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGC                                                                                              <  SRR4302533.2652841/94‑1 (MQ=60)
TCAGCTGGAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGC                                                                                              >  SRR4302533.5397657/1‑94 (MQ=60)
   GCTGGAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACT                                                                                           <  SRR4302533.660066/94‑1 (MQ=60)
    CTGGAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTT                                                                                          <  SRR4302533.2390814/94‑1 (MQ=60)
      GGAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTC                                                                                        >  SRR4302533.876096/1‑94 (MQ=60)
      GGAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTC                                                                                        <  SRR4302533.383030/94‑1 (MQ=60)
       GAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCA                                                                                       <  SRR4302533.476441/94‑1 (MQ=60)
         AGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACC                                                                                     <  SRR4302533.3303274/94‑1 (MQ=60)
            GGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCC                                                                                  >  SRR4302533.195463/1‑94 (MQ=60)
             GTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCT                                                                                 <  SRR4302533.1003833/94‑1 (MQ=60)
              TGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTG                                                                                >  SRR4302533.6235568/1‑94 (MQ=60)
              TGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTG                                                                                >  SRR4302533.446323/1‑94 (MQ=60)
              TGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTG                                                                                >  SRR4302533.5328051/1‑94 (MQ=60)
                CAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGAT                                                                              <  SRR4302533.953402/94‑1 (MQ=60)
                 AGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATT                                                                             >  SRR4302533.3516427/1‑94 (MQ=60)
                  GGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTT                                                                            <  SRR4302533.3408659/94‑1 (MQ=60)
                  GGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTT                                                                            <  SRR4302533.2304279/94‑1 (MQ=60)
                  GGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTT                                                                            <  SRR4302533.6295733/94‑1 (MQ=60)
                  GGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTT                                                                            >  SRR4302533.5569247/1‑94 (MQ=60)
                   GAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTC                                                                           <  SRR4302533.4540196/94‑1 (MQ=60)
                    AAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCA                                                                          >  SRR4302533.339386/1‑94 (MQ=60)
                     AGATATGGCTAACGAATTTCCTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCAT                                                                         >  SRR4302533.6171991/1‑94 (MQ=60)
                      GATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATT                                                                        <  SRR4302533.291416/94‑1 (MQ=60)
                      GATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACCTTCACCGCCTGATTTCATT                                                                        >  SRR4302533.3825006/1‑94 (MQ=60)
                       ATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTA                                                                       <  SRR4302533.2232067/94‑1 (MQ=60)
                       ATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTA                                                                       <  SRR4302533.948610/94‑1 (MQ=60)
                       ATATGGCTAAAGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTA                                                                       >  SRR4302533.1605653/1‑94 (MQ=60)
                         ATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACT                                                                     <  SRR4302533.3962348/94‑1 (MQ=60)
                         ATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACT                                                                     <  SRR4302533.6282217/94‑1 (MQ=60)
                          TGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTG                                                                    <  SRR4302533.687490/94‑1 (MQ=60)
                           GGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGC                                                                   >  SRR4302533.5314731/1‑94 (MQ=60)
                           GGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGC                                                                   >  SRR4302533.5722308/1‑94 (MQ=60)
                              TAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAA                                                                >  SRR4302533.3982115/1‑94 (MQ=60)
                              TAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAA                                                                >  SRR4302533.876305/1‑94 (MQ=60)
                               AACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAAT                                                               >  SRR4302533.4880340/1‑94 (MQ=60)
                               AACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAAT                                                               <  SRR4302533.96060/94‑1 (MQ=60)
                                ACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATG                                                              >  SRR4302533.2668120/1‑94 (MQ=60)
                                  aaaacTCGTGATCTGCTAGATGAGAAATGCAAACGCAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCC                                                            <  SRR4302533.608158/89‑1 (MQ=60)
                                   AATTTCGTGATCTTCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCC                                                           >  SRR4302533.3956998/1‑94 (MQ=60)
                                   AATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCC                                                           <  SRR4302533.2434998/94‑1 (MQ=60)
                                     TTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCT                                                         >  SRR4302533.4933680/1‑94 (MQ=60)
                                     TTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCT                                                         <  SRR4302533.793070/94‑1 (MQ=60)
                                     TTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCT                                                         <  SRR4302533.1753963/94‑1 (MQ=60)
                                      TTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTG                                                        <  SRR4302533.4668882/94‑1 (MQ=60)
                                        CGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCG                                                      <  SRR4302533.3503475/94‑1 (MQ=60)
                                        CGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCG                                                      >  SRR4302533.523142/1‑94 (MQ=60)
                                        CGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCG                                                      <  SRR4302533.6232547/94‑1 (MQ=60)
                                         GTAATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGG                                                     >  SRR4302533.230542/1‑94 (MQ=60)
                                            ATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGG                                                  >  SRR4302533.3289324/1‑94 (MQ=60)
                                             TCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGC                                                 >  SRR4302533.4606645/1‑94 (MQ=60)
                                             TCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGC                                                 <  SRR4302533.1512303/94‑1 (MQ=60)
                                                GCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATT                                              <  SRR4302533.3621627/94‑1 (MQ=60)
                                                 CTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTT                                             <  SRR4302533.5243292/94‑1 (MQ=60)
                                                  TTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTA                                            >  SRR4302533.3131012/1‑94 (MQ=60)
                                                  TTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTA                                            <  SRR4302533.1896713/94‑1 (MQ=60)
                                                   TGTTGAGAAATTCAAAGACAGCAAAGTAGAACCCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTAT                                           <  SRR4302533.769154/94‑1 (MQ=60)
                                                   TGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTAT                                           <  SRR4302533.1662306/94‑1 (MQ=60)
                                                   TGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTAT                                           <  SRR4302533.5633907/94‑1 (MQ=60)
                                                   TGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTAT                                           <  SRR4302533.875309/94‑1 (MQ=60)
                                                    GTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCTCTGCGGGGGCATTTATG                                          >  SRR4302533.3293411/1‑94 (MQ=60)
                                                    GTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATG                                          <  SRR4302533.1261287/94‑1 (MQ=60)
                                                    GTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATG                                          <  SRR4302533.4680650/94‑1 (MQ=60)
                                                     TTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGG                                         <  SRR4302533.6024011/94‑1 (MQ=60)
                                                       GAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAA                                       <  SRR4302533.4781026/94‑1 (MQ=60)
                                                       GAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAA                                       <  SRR4302533.6038721/94‑1 (MQ=60)
                                                       GAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAA                                       >  SRR4302533.2217945/1‑94 (MQ=60)
                                                         GAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAAC                                     <  SRR4302533.4033439/94‑1 (MQ=60)
                                                          AAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACG                                    <  SRR4302533.1519495/94‑1 (MQ=60)
                                                            ATTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCGTTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTA                                  <  SRR4302533.969949/94‑1 (MQ=60)
                                                             TTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAA                                 >  SRR4302533.2351625/1‑94 (MQ=60)
                                                             TTCAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAA                                 <  SRR4302533.6261710/94‑1 (MQ=60)
                                                               CAAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATT                               >  SRR4302533.4670530/1‑94 (MQ=60)
                                                                AAAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTA                              >  SRR4302533.3406240/1‑94 (MQ=60)
                                                                 AAGACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAA                             <  SRR4302533.3297967/94‑1 (MQ=60)
                                                                   GACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACT                           <  SRR4302533.389427/94‑1 (MQ=60)
                                                                   GACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACT                           <  SRR4302533.3421530/94‑1 (MQ=60)
                                                                    ACAGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTC                          <  SRR4302533.2484525/94‑1 (MQ=60)
                                                                      AGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAA                        >  SRR4302533.800284/1‑94 (MQ=60)
                                                                      AGCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCAATTATGGAAACGTAATTAACTCAA                        >  SRR4302533.2693169/1‑94 (MQ=60)
                                                                       GCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAAT                       >  SRR4302533.212479/1‑94 (MQ=60)
                                                                       GCAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAAT                       >  SRR4302533.4811148/1‑94 (MQ=60)
                                                                        CAAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATA                      <  SRR4302533.510558/94‑1 (MQ=60)
                                                                         AAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAA                     <  SRR4302533.4972387/94‑1 (MQ=60)
                                                                         AAAGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAA                     <  SRR4302533.2706942/94‑1 (MQ=60)
                                                                           AGTAGAAACCTTTATTGGCACTTTCACCGCCTGGTTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATC                   >  SRR4302533.5794014/1‑94 (MQ=60)
                                                                           AGTAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATC                   >  SRR4302533.866208/1‑94 (MQ=60)
                                                                             TAGAAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCAC                 >  SRR4302533.5733588/1‑94 (MQ=60)
                                                                                AAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGG              >  SRR4302533.3780136/1‑94 (MQ=60)
                                                                                AAACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGG              <  SRR4302533.4896028/94‑1 (MQ=60)
                                                                                  ACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGAT            <  SRR4302533.3803293/94‑1 (MQ=60)
                                                                                  ACCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGAT            >  SRR4302533.1989544/1‑94 (MQ=60)
                                                                                   CCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATG           >  SRR4302533.3539200/1‑94 (MQ=60)
                                                                                   CCTTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATG           >  SRR4302533.3299657/1‑94 (MQ=60)
                                                                                     TTTATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGT         <  SRR4302533.2948473/94‑1 (MQ=60)
                                                                                        ATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGAG      <  SRR4302533.6153215/94‑1 (MQ=60)
                                                                                        ATTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGAG      <  SRR4302533.2997677/94‑1 (MQ=60)
                                                                                         TTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGAGG     <  SRR4302533.1085666/94‑1 (MQ=60)
                                                                                         TTGGCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGAGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGAGG     <  SRR4302533.2086551/94‑1 (MQ=60)
                                                                                            GCACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGAGGGCT  <  SRR4302533.3917633/94‑1 (MQ=60)
                                                                                            GCACTTTCACCGCCTGATGTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGAGGGCT  <  SRR4302533.5707203/94‑1 (MQ=60)
                                                                                             |                                                                                            
TCAGCTGGAAGCGGTGCAGGAAGATATGGCTAACGAATTTCGTGATCTGCTTGTTGAGAAATTCAAAGACAGCAAAGTAGAAACCTTTATTGGTACTTTCACCGCCTGATTTCATTACTGCAAATGCCCCTGCGGGGGCATTTATGGAAACGTAATTAACTCAATAATCACCGGATGGTGAGGGCT  >  NC_000913/2472768‑2472953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑