Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,542,867	T→C	T255A (ACC→GCC)	yfeT ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,542,867	0	T	C	100.0%	816.1 / NA	250	T255A (ACC→GCC)	yfeT	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (123/127); total (123/127)

Only 100 of 255 total aligned reads displayed.

TCAGGCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGTAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGC  >  NC_000913/2542777‑2542955

  aGGCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACa                                                                                      >  2:3504873/1‑93 (MQ=255)

  aGGCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACa                                                                                      >  1:2080780/1‑93 (MQ=255)

   ggCGTTGTGTTAGCTCACTGCTGCTCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAg                                                                                     <  1:6004898/93‑1 (MQ=255)

   ggCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAg                                                                                     <  2:2666127/93‑1 (MQ=255)

   ggCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAAAAg                                                                                     >  1:2958556/1‑93 (MQ=255)

     cGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCTTTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGaa                                                                                   <  1:3387913/93‑1 (MQ=255)

     cGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGaa                                                                                   >  2:4878572/1‑93 (MQ=255)

      gTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAAt                                                                                  >  2:4259291/1‑93 (MQ=255)

       ttGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAAtt                                                                                 >  2:2771969/1‑93 (MQ=255)

       ttGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAAtt                                                                                 >  1:5684590/1‑93 (MQ=255)

          tgtTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTg                                                                              <  1:4894354/93‑1 (MQ=255)

          tgtTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTg                                                                              <  2:6292128/93‑1 (MQ=255)

           gtTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTgc                                                                             >  2:5485083/1‑93 (MQ=255)

            ttAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTgcg                                                                            <  1:1014944/93‑1 (MQ=255)

            ttAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTgcg                                                                            >  1:1758749/1‑93 (MQ=255)

             tAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTgcgc                                                                           <  1:5345941/93‑1 (MQ=255)

              aGCTCGCTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGcc                                                                          <  1:1538152/93‑1 (MQ=255)

              aGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGcc                                                                          >  2:1877863/1‑93 (MQ=255)

                cgcACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGt                                                                        <  1:4003688/91‑1 (MQ=255)

                cTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACACACAGTAAATCGGCAACAGAATTTTGCGCCGt                                                                        <  2:2244084/93‑1 (MQ=255)

                   aCTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCg                                                                     >  1:4238308/1‑93 (MQ=255)

                    ctgctgCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCgg                                                                    >  1:1145194/1‑93 (MQ=255)

                     tgctgcGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCggg                                                                   <  1:1111004/93‑1 (MQ=255)

                       ctgcGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCGACAAACAGTAAATCGGCAACAGAATGTTGCGCCGTGCGGGTa                                                                 <  2:1569315/93‑1 (MQ=255)

                       ctgcGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTa                                                                 <  2:5782395/93‑1 (MQ=255)

                        tgcGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAg                                                                <  2:1173567/93‑1 (MQ=255)

                         gcgcTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGa                                                               >  1:5402358/1‑93 (MQ=255)

                         gcgcTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGa                                                               <  2:366283/93‑1 (MQ=255)

                           gcTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACa                                                             >  2:4372342/1‑93 (MQ=255)

                            cTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACAt                                                            >  1:6227924/1‑93 (MQ=255)

                            cTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACAt                                                            >  1:3689871/1‑93 (MQ=255)

                            cTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACAt                                                            >  2:5243445/1‑93 (MQ=255)

                             tGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATc                                                           <  1:5842729/93‑1 (MQ=255)

                             tGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATc                                                           >  1:5377516/1‑93 (MQ=255)

                             tGAATCATTATCAATGACTCCACATCATTGAGTTGCACAAGACCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATc                                                           <  1:2125078/93‑1 (MQ=255)

                                aTCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATcgac                                                        <  1:4082010/93‑1 (MQ=255)

                                aTCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATcgac                                                        <  1:2651693/93‑1 (MQ=255)

                                aTCATTTTCAATGACTCCACATCATGGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGTCGTGCGGGTAGACATcgac                                                        <  2:4624216/93‑1 (MQ=255)

                                 tCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATcgacg                                                       >  2:933991/1‑93 (MQ=255)

                                 tCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATcgacg                                                       <  2:6021619/93‑1 (MQ=255)

                                  cATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATcgacga                                                      >  1:398542/1‑93 (MQ=255)

                                  cATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATcgacga                                                      <  2:6089072/93‑1 (MQ=255)

                                  cATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATcgacga                                                      <  1:3051111/93‑1 (MQ=255)

                                  cATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATcgacga                                                      >  2:3818982/1‑93 (MQ=255)

                                  cATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATcgacga                                                      <  2:3389140/93‑1 (MQ=255)

                                    ttttCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGc                                                    <  2:3295263/93‑1 (MQ=255)

                                    ttttCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGc                                                    <  2:732038/93‑1 (MQ=255)

                                    ttttCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGc                                                    >  1:1064999/1‑93 (MQ=255)

                                      ttCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTa                                                  <  1:2343409/93‑1 (MQ=255)

                                      ttCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTa                                                  <  2:3077349/93‑1 (MQ=255)

                                       tCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTAc                                                 >  1:3543799/1‑93 (MQ=255)

                                        cAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACg                                                <  1:889501/93‑1 (MQ=255)

                                        cAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACg                                                >  1:3216955/1‑93 (MQ=255)

                                         aaTGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGc                                               <  2:565928/93‑1 (MQ=255)

                                          aTGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGcc                                              >  1:3094981/1‑93 (MQ=255)

                                            gACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCAt                                            >  1:4410265/1‑93 (MQ=255)

                                             aCTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCAtt                                           <  1:2434763/93‑1 (MQ=255)

                                               tCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCg                                         <  2:4715452/93‑1 (MQ=255)

                                                ccACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCgg                                        <  1:1270544/93‑1 (MQ=255)

                                                ccACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCgg                                        <  2:4124615/93‑1 (MQ=255)

                                                ccACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCgg                                        <  2:3151896/93‑1 (MQ=255)

                                                 cacaTCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGt                                       <  2:2983801/93‑1 (MQ=255)

                                                 cacaTCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGt                                       >  2:3718932/1‑93 (MQ=255)

                                                 cacaTCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGt                                       >  1:1334923/1‑93 (MQ=255)

                                                  ccatcatTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGtt                                      <  1:5064135/92‑1 (MQ=255)

                                                  ccatcatTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGtt                                      <  2:867498/92‑1 (MQ=255)

                                                  acaTCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGtt                                      >  2:5105070/1‑93 (MQ=255)

                                                    atcatTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTtc                                    >  2:256996/1‑93 (MQ=255)

                                                    atcatTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTtc                                    >  1:2492124/1‑93 (MQ=255)

                                                    atcatTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTtc                                    >  2:2427410/1‑93 (MQ=255)

                                                      catTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTtctc                                  >  2:2324904/1‑93 (MQ=255)

                                                      catTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTtctc                                  >  1:3671001/1‑93 (MQ=255)

                                                        ttGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCg                                >  1:3258596/1‑93 (MQ=255)

                                                               gCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACgg                         >  1:5973567/1‑93 (MQ=255)

                                                                 acaAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTa                       <  1:2824432/93‑1 (MQ=255)

                                                                 acaAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTa                       >  2:4548297/1‑93 (MQ=255)

                                                                    aGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCg                    >  2:1714326/1‑93 (MQ=255)

                                                                     ggCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGa                   >  2:4176831/1‑93 (MQ=255)

                                                                     ggCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGa                   <  1:6147017/93‑1 (MQ=255)

                                                                      gCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTTGGTTTCTCCGGAAACGGTATCGAg                  <  2:1922050/93‑1 (MQ=255)

                                                                      gCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAg                  <  1:5504517/93‑1 (MQ=255)

                                                                      gCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAg                  <  1:4679763/93‑1 (MQ=255)

                                                                      gCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAg                  >  1:3151796/1‑93 (MQ=255)

                                                                       ccAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAgg                 <  1:4563970/93‑1 (MQ=255)

                                                                        caacaaACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAggg                >  1:3360369/1‑93 (MQ=255)

                                                                        caacaaACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAggg                >  1:261/1‑93 (MQ=255)

                                                                        caacaaACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAggg                >  1:3501185/1‑93 (MQ=255)

                                                                         aacaaacaGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGt               <  2:6000750/93‑1 (MQ=255)

                                                                          acaaacaGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTg              >  1:6080559/1‑93 (MQ=255)

                                                                             aacaGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGaaa           >  1:733748/1‑93 (MQ=255)

                                                                              acaGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAAt          >  2:5148191/1‑93 (MQ=255)

                                                                                aGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATgc        <  1:5660703/93‑1 (MQ=255)

                                                                                 gTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATgcg       >  2:1455881/1‑93 (MQ=255)

                                                                                  tAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATgcgc      <  2:3915309/93‑1 (MQ=255)

                                                                                  tAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATgcgc      <  2:165781/93‑1 (MQ=255)

                                                                                   aaaTCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGcc     <  2:4328566/93‑1 (MQ=255)

                                                                                      tCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAgc  <  2:4692589/93‑1 (MQ=255)

                                                                                      tCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAgc  <  2:4643642/93‑1 (MQ=255)

                                                                                      tCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAgc  <  2:4497347/93‑1 (MQ=255)

                                                                                      acGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAgc  <  1:6277712/92‑1 (MQ=255)

TCAGGCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGTAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGC  >  NC_000913/2542777‑2542955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTTCAGGCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGTAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCG  >  NC_000913/2542775‑2542960

TTTCAGGCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCA                                                                                              >  SRR4302533.81154/1‑94 (MQ=60)

TTTCAGGCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCA                                                                                              <  SRR4302533.5353287/94‑1 (MQ=60)

 TTCAGGCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAA                                                                                             >  SRR4302533.2588624/1‑94 (MQ=60)

 TTCAGGCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAA                                                                                             <  SRR4302533.2266047/94‑1 (MQ=60)

   CAGGCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACA                                                                                           >  SRR4302533.2093582/1‑94 (MQ=60)

    AGGCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAAAAG                                                                                          >  SRR4302533.2976639/1‑94 (MQ=60)

    AGGCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCAAACAAACAGTAAATCGGCAACAG                                                                                          <  SRR4302533.2450260/94‑1 (MQ=60)

     GGCGTTGTGTTAGCTCACTGCTGCTCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGA                                                                                         <  SRR4302533.6041282/94‑1 (MQ=60)

      GCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAA                                                                                        >  SRR4302533.5964731/1‑94 (MQ=60)

      GCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAA                                                                                        >  SRR4302533.1405756/1‑94 (MQ=60)

       CGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCTTTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAAT                                                                                       <  SRR4302533.3408832/94‑1 (MQ=60)

       CGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAAT                                                                                       <  SRR4302533.5517692/94‑1 (MQ=60)

        GTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATT                                                                                      >  SRR4302533.5718926/1‑94 (MQ=60)

          TGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTT                                                                                    <  SRR4302533.707906/94‑1 (MQ=60)

           GTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTG                                                                                   <  SRR4302533.2385674/94‑1 (MQ=60)

            TGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGC                                                                                  <  SRR4302533.5504833/94‑1 (MQ=60)

            TGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGC                                                                                  >  SRR4302533.4210704/1‑94 (MQ=60)

            TGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGC                                                                                  <  SRR4302533.4924017/94‑1 (MQ=60)

             GTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCG                                                                                 <  SRR4302533.1431887/94‑1 (MQ=60)

             GTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCG                                                                                 >  SRR4302533.1769468/1‑94 (MQ=60)

              TTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGC                                                                                <  SRR4302533.1020904/94‑1 (MQ=60)

              TTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGC                                                                                <  SRR4302533.5700107/94‑1 (MQ=60)

               TAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCC                                                                               >  SRR4302533.507876/1‑94 (MQ=60)

               TAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCC                                                                               <  SRR4302533.5378004/94‑1 (MQ=60)

                AGCTCGCTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCG                                                                              <  SRR4302533.1547398/94‑1 (MQ=60)

                  CGCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTG                                                                            <  SRR4302533.4028064/94‑1 (MQ=60)

                    CACTGCTTCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCG                                                                          <  SRR4302533.4380299/94‑1 (MQ=60)

                    CACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCG                                                                          >  SRR4302533.4263906/1‑94 (MQ=60)

                     ACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGG                                                                         >  SRR4302533.1152029/1‑94 (MQ=60)

                      CTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGTG                                                                        >  SRR4302533.1069078/1‑94 (MQ=60)

                      CTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGG                                                                        <  SRR4302533.570486/94‑1 (MQ=60)

                       TGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGT                                                                       >  SRR4302533.3601161/1‑94 (MQ=60)

                       TGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGT                                                                       <  SRR4302533.1117598/94‑1 (MQ=60)

                        GCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTA                                                                      <  SRR4302533.2822192/94‑1 (MQ=60)

                        GCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTA                                                                      <  SRR4302533.3169497/94‑1 (MQ=60)

                         CTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAG                                                                     <  SRR4302533.1111650/94‑1 (MQ=60)

                          TGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGA                                                                    >  SRR4302533.5434821/1‑94 (MQ=60)

                           GCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGAC                                                                   <  SRR4302533.4075987/94‑1 (MQ=60)

                            CGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACA                                                                  <  SRR4302533.129311/94‑1 (MQ=60)

                             GCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACAT                                                                 >  SRR4302533.6265233/1‑94 (MQ=60)

                             GCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACAT                                                                 >  SRR4302533.3712540/1‑94 (MQ=60)

                              CTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATC                                                                >  SRR4302533.5409832/1‑94 (MQ=60)

                              CTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATC                                                                <  SRR4302533.6209575/94‑1 (MQ=60)

                               TGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCG                                                               <  SRR4302533.5878052/94‑1 (MQ=60)

                               TGAATCATTATCAATGACTCCACATCATTGAGTTGCACAAGACCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCG                                                               <  SRR4302533.2138180/94‑1 (MQ=60)

                                 AATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGAC                                                             >  SRR4302533.859463/1‑94 (MQ=60)

                                 AATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGAC                                                             >  SRR4302533.1950809/1‑94 (MQ=60)

                                 AATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGAC                                                             <  SRR4302533.3081109/94‑1 (MQ=60)

                                  ATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACG                                                            <  SRR4302533.4106860/94‑1 (MQ=60)

                                  ATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACG                                                            <  SRR4302533.2667983/94‑1 (MQ=60)

                                  ATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACG                                                            <  SRR4302533.4499239/94‑1 (MQ=60)

                                   TCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGA                                                           >  SRR4302533.400950/1‑94 (MQ=60)

                                   TCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGA                                                           >  SRR4302533.4683090/1‑94 (MQ=60)

                                    CATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAG                                                          <  SRR4302533.3069792/94‑1 (MQ=60)

                                    CATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAG                                                          <  SRR4302533.6250774/94‑1 (MQ=60)

                                     ATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGC                                                         >  SRR4302533.2791244/1‑94 (MQ=60)

                                     ATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGC                                                         >  SRR4302533.1071253/1‑94 (MQ=60)

                                     ATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGC                                                         <  SRR4302533.3336834/94‑1 (MQ=60)

                                       TTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGGTA                                                       >  SRR4302533.3345931/1‑94 (MQ=60)

                                        TTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTAC                                                      >  SRR4302533.3565638/1‑94 (MQ=60)

                                        TTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTAC                                                      <  SRR4302533.2357914/94‑1 (MQ=60)

                                         TCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACG                                                     >  SRR4302533.3236790/1‑94 (MQ=60)

                                         TCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACG                                                     >  SRR4302533.127250/1‑94 (MQ=60)

                                          CAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGC                                                    >  SRR4302533.1143687/1‑94 (MQ=60)

                                          CAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGC                                                    >  SRR4302533.5814150/1‑94 (MQ=60)

                                          CAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGC                                                    <  SRR4302533.894725/94‑1 (MQ=60)

                                          CAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGC                                                    >  SRR4302533.3209717/1‑94 (MQ=60)

                                           AATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCC                                                   >  SRR4302533.708049/1‑94 (MQ=60)

                                           AATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCC                                                   >  SRR4302533.6285797/1‑94 (MQ=60)

                                           AATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCC                                                   >  SRR4302533.3114008/1‑94 (MQ=60)

                                            ATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAATTCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCA                                                  >  SRR4302533.3401374/1‑94 (MQ=60)

                                             TGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCAT                                                 >  SRR4302533.4436900/1‑94 (MQ=60)

                                             TGACTCCACATCATTGAGATGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCAT                                                 >  SRR4302533.523807/1‑94 (MQ=60)

                                               ACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTC                                               <  SRR4302533.2449801/94‑1 (MQ=60)

                                                CTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCG                                              >  SRR4302533.4814821/1‑94 (MQ=60)

                                                CTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCG                                              >  SRR4302533.2198674/1‑94 (MQ=60)

                                                  CCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGT                                            >  SRR4302533.1673058/1‑94 (MQ=60)

                                                  CCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGT                                            >  SRR4302533.1342933/1‑94 (MQ=60)

                                                  CCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGT                                            >  SRR4302533.607489/1‑94 (MQ=60)

                                                  CCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGT                                            <  SRR4302533.1278144/94‑1 (MQ=60)

                                                   CACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTT                                           >  SRR4302533.5408823/1‑94 (MQ=60)

                                                    CCATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTT                                          <  SRR4302533.5094728/94‑1 (MQ=60)

                                                     CATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTC                                         >  SRR4302533.2507472/1‑94 (MQ=60)

                                                     CATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTC                                         <  SRR4302533.2133077/94‑1 (MQ=60)

                                                      ATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCT                                        <  SRR4302533.5995745/94‑1 (MQ=60)

                                                       TCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTC                                       >  SRR4302533.3416457/1‑94 (MQ=60)

                                                       TCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTC                                       >  SRR4302533.3693563/1‑94 (MQ=60)

                                                        CATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCC                                      <  SRR4302533.4153302/94‑1 (MQ=60)

                                                         ATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCG                                     >  SRR4302533.3278695/1‑94 (MQ=60)

                                                          TTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGG                                    <  SRR4302533.6114697/94‑1 (MQ=60)

                                                          TTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGG                                    <  SRR4302533.2655885/94‑1 (MQ=60)

                                                          TTGAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGG                                    <  SRR4302533.316007/94‑1 (MQ=60)

                                                            GAGTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAA                                  >  SRR4302533.4012976/1‑94 (MQ=60)

                                                              GTTGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAAC                                <  SRR4302533.4913740/94‑1 (MQ=60)

                                                                TGCACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGG                              >  SRR4302533.6009723/1‑94 (MQ=60)

                                                                  CACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTA                            <  SRR4302533.6030826/94‑1 (MQ=60)

                                                                   ACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTAT                           <  SRR4302533.3663855/94‑1 (MQ=60)

                                                                   ACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTAT                           <  SRR4302533.2841813/94‑1 (MQ=60)

                                                                   ACAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTAC                           >  SRR4302533.4043043/1‑94 (MQ=60)

                                                                    CAAGGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATC                          >  SRR4302533.3911842/1‑94 (MQ=60)

                                                                       GGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAG                       >  SRR4302533.2996125/1‑94 (MQ=60)

                                                                       GGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAG                       <  SRR4302533.6184024/94‑1 (MQ=60)

                                                                       GGCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAG                       >  SRR4302533.3171172/1‑94 (MQ=60)

                                                                        GCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGG                      <  SRR4302533.3792170/94‑1 (MQ=60)

                                                                        GCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGG                      <  SRR4302533.5537730/94‑1 (MQ=60)

                                                                        GCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGG                      <  SRR4302533.5309463/94‑1 (MQ=60)

                                                                        GCCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGG                      <  SRR4302533.4708124/94‑1 (MQ=60)

                                                                         CCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGG                     >  SRR4302533.3381130/1‑94 (MQ=60)

                                                                         CCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGG                     >  SRR4302533.3522777/1‑94 (MQ=60)

                                                                         CCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGG                     <  SRR4302533.871750/94‑1 (MQ=60)

                                                                         CCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGG                     >  SRR4302533.1099787/1‑94 (MQ=60)

                                                                         CCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGG                     >  SRR4302533.263/1‑94 (MQ=60)

                                                                         CCAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGG                     <  SRR4302533.4591644/94‑1 (MQ=60)

                                                                          CAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGT                    <  SRR4302533.3703383/94‑1 (MQ=60)

                                                                          CAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGT                    <  SRR4302533.2614271/94‑1 (MQ=60)

                                                                          CAACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGT                    >  SRR4302533.352827/1‑94 (MQ=60)

                                                                           AACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTG                   >  SRR4302533.6117331/1‑94 (MQ=60)

                                                                           AACAAAAAGTAAATCGGCAACAGAATTTTCCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTG                   <  SRR4302533.5415138/94‑1 (MQ=60)

                                                                            ACAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGA                  >  SRR4302533.6163944/1‑94 (MQ=60)

                                                                             CAAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAA                 <  SRR4302533.3271356/94‑1 (MQ=60)

                                                                              AAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAA                <  SRR4302533.2921438/94‑1 (MQ=60)

                                                                              AAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAA                >  SRR4302533.738065/1‑94 (MQ=60)

                                                                              AAACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAA                >  SRR4302533.5422677/1‑94 (MQ=60)

                                                                               AACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAAT               <  SRR4302533.2385072/94‑1 (MQ=60)

                                                                               AACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAAT               <  SRR4302533.5668250/94‑1 (MQ=60)

                                                                                ACAGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATG              >  SRR4302533.4533779/1‑94 (MQ=60)

                                                                                  AGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCG            <  SRR4302533.2189439/94‑1 (MQ=60)

                                                                                  AGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCG            <  SRR4302533.5694905/94‑1 (MQ=60)

                                                                                  AGTAAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCG            <  SRR4302533.3207249/94‑1 (MQ=60)

                                                                                    TAAATCGGCAACAGAATTTTGCGCCGTGCGGTTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCC          <  SRR4302533.1204177/94‑1 (MQ=60)

                                                                                     AAATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCA         <  SRR4302533.3020331/94‑1 (MQ=60)

                                                                                       ATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGC       <  SRR4302533.3510834/94‑1 (MQ=60)

                                                                                       ATCGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGC       >  SRR4302533.181591/1‑94 (MQ=60)

                                                                                         CGGCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCG     >  SRR4302533.3390496/1‑94 (MQ=60)

                                                                                           GCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCC   <  SRR4302533.6178712/94‑1 (MQ=60)

                                                                                           GCAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCC   >  SRR4302533.3558841/1‑94 (MQ=60)

                                                                                            CAACAGAATTTTGCGCCGTGTGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCG  <  SRR4302533.3371412/94‑1 (MQ=60)

                                                                                            CAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCTATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCG  <  SRR4302533.6269367/94‑1 (MQ=60)

                                                                                            CAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCG  >  SRR4302533.5568272/1‑94 (MQ=60)

                                                                                            CAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCG  >  SRR4302533.1465872/1‑94 (MQ=60)

                                                                                            CAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCG  >  SRR4302533.2313569/1‑94 (MQ=60)

TTTCAGGCGTTGTGTTAGCTCACTGCTGCGCTGAATCATTTTCAATGACTCCACATCATTGAGTTGCACAAGGCCAACAAACAGTAAATCGGTAACAGAATTTTGCGCCGTGCGGGTAGACATCGACGAGCTACGCCATTCGGTTTCTCCGGAAACGGTATCGAGGGTGAAATGCGCCAGCCGCCG  >  NC_000913/2542775‑2542960

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`