Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,586,558 |
A→G |
Q315R (CAG→CGG) |
acrD → |
AcrD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,586,558 | 0 | A | G | 99.5%
| 659.4
/ NA
| 204 | Q315R (CAG→CGG) | acrD | AcrD |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (80/123); minor base T (1/0); total (81/123) |
| Fisher's exact test for biased strand distribution p-value = 3.97e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 215 total aligned reads displayed.
CAGCCTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCAGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACGCTGCTGG > NC_000913/2586468‑2586650
|
cagccTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGt > 1:5464586/1‑93 (MQ=255)
agccTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTa > 1:4698724/1‑93 (MQ=255)
gccTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTAt < 2:407141/93‑1 (MQ=255)
cTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTAttt > 2:6241575/1‑93 (MQ=255)
cTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTAttt < 2:2650358/93‑1 (MQ=255)
tCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTc > 1:3890419/1‑93 (MQ=255)
tCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTc > 1:3186284/1‑93 (MQ=255)
tCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTc > 2:1905794/1‑93 (MQ=255)
tCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTc < 1:2480834/93‑1 (MQ=255)
tCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTc > 2:4031808/1‑93 (MQ=255)
tCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGAGCGGTATTTc < 1:6279205/93‑1 (MQ=255)
ccGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTcc < 1:2093093/93‑1 (MQ=255)
ccGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTcc < 2:5211788/93‑1 (MQ=255)
tGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATg > 2:3004714/1‑93 (MQ=255)
gggggTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATgg > 2:2132485/1‑93 (MQ=255)
ggggTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGa < 2:2530216/93‑1 (MQ=255)
ggggTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGa > 2:4720496/1‑93 (MQ=255)
gggTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGAc > 1:2926810/1‑93 (MQ=255)
ggTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACt < 2:2422358/93‑1 (MQ=255)
ggTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACt < 1:3382011/93‑1 (MQ=255)
ggTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACt < 2:741804/93‑1 (MQ=255)
ggTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACt < 2:4805332/93‑1 (MQ=255)
gTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTg > 2:5399864/1‑93 (MQ=255)
aaaaCTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGa < 2:3231891/93‑1 (MQ=255)
aaaCTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGaa < 2:1238955/93‑1 (MQ=255)
aaaCTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGaa > 1:429699/1‑93 (MQ=255)
aaCTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAAt < 1:1115839/93‑1 (MQ=255)
cTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATAc < 2:599475/93‑1 (MQ=255)
tGGACTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACa > 2:4910951/1‑93 (MQ=255)
ccccGGCGCTAACGAAATGGCGACAGCTGAGCTGGTGCTAATTCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGt < 2:437830/91‑1 (MQ=255)
tCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTg > 2:1301355/1‑93 (MQ=255)
tCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTg < 1:5669336/93‑1 (MQ=255)
ccGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTgg < 2:1067465/93‑1 (MQ=255)
cGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGc < 1:55108/93‑1 (MQ=255)
gcgcTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGt > 1:5724470/1‑93 (MQ=255)
cgcTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTa > 1:2618804/1‑93 (MQ=255)
gcTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTAt < 2:3904774/93‑1 (MQ=255)
gcTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTAt > 1:1777658/1‑93 (MQ=255)
tAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGa > 2:3932573/1‑93 (MQ=255)
tAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGa < 2:4977759/93‑1 (MQ=255)
aaCGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGaa > 2:6127668/1‑93 (MQ=255)
aaCGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGaa < 2:1180618/93‑1 (MQ=255)
aaCGAAATAGCGACAGCGGAGCTGGAGCTCAATCGTTTCGACCCGCCGGCGCGCGCATTCCCGCATGGACTCGGACACAAGGTGGCGTATGaa > 2:209481/1‑93 (MQ=255)
aCGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGaaa > 2:2990440/1‑93 (MQ=255)
cGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAac > 1:158846/1‑93 (MQ=255)
cGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAac < 1:5881616/93‑1 (MQ=255)
gAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAacc < 1:431161/93‑1 (MQ=255)
aaaTGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAacca > 1:927647/1‑93 (MQ=255)
aaaTGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAacca > 1:4526690/1‑93 (MQ=255)
aaaTGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAacca < 1:363122/93‑1 (MQ=255)
aaaTGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAacca > 1:2729381/1‑93 (MQ=255)
aaTGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAaccac < 1:70652/93‑1 (MQ=255)
aaTGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAaccac < 1:6136434/93‑1 (MQ=255)
aaTGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAaccac < 1:1000348/93‑1 (MQ=255)
aTGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAaccacc < 2:2395503/93‑1 (MQ=255)
aTGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAaccacc < 1:5831817/93‑1 (MQ=255)
tGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCt > 2:3425245/1‑93 (MQ=255)
tGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCt < 2:4593608/93‑1 (MQ=255)
ggCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTc < 2:2850511/93‑1 (MQ=255)
gACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGtt > 2:5558791/1‑93 (MQ=255)
aCAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGttt < 2:3645585/93‑1 (MQ=255)
cGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTa > 1:2022177/1‑93 (MQ=255)
gAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTaaa > 1:2379364/1‑93 (MQ=255)
gCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGc < 1:3529439/93‑1 (MQ=255)
gCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGc < 2:2858782/93‑1 (MQ=255)
tGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCt > 2:1542038/1‑93 (MQ=255)
gTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTcc < 2:4353382/93‑1 (MQ=255)
gTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTcc < 2:1360494/93‑1 (MQ=255)
tGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATCCAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCa < 2:3300430/93‑1 (MQ=255)
gCTCAATCGTCTCGTGGAGCTGGCGCGGTATTACCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCAt < 2:1995044/93‑1 (MQ=255)
cTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCAtt < 1:2192192/93‑1 (MQ=255)
cTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCAtt < 2:5722375/93‑1 (MQ=255)
cTCAATCGTCTCGACGAGCCAGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCAtt > 1:4374092/1‑93 (MQ=255)
tCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTg > 1:1319767/1‑93 (MQ=255)
cAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGa < 2:2751490/93‑1 (MQ=255)
aaTCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGaa > 2:3760764/1‑93 (MQ=255)
aaTCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGaa < 1:821679/93‑1 (MQ=255)
aaTCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGaa > 1:4581570/1‑93 (MQ=255)
aTCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAg < 1:314713/93‑1 (MQ=255)
cGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGAc > 2:2286420/1‑93 (MQ=255)
gTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACg < 1:1829901/93‑1 (MQ=255)
tctcGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACgt < 2:5154822/93‑1 (MQ=255)
tctcGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACgt < 2:2269101/93‑1 (MQ=255)
ctcGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACgtg < 1:6236749/93‑1 (MQ=255)
tcGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACgtgg < 1:283241/93‑1 (MQ=255)
gacgaGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACgtggtg < 1:4415671/93‑1 (MQ=255)
acgaGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGa > 2:5377544/1‑93 (MQ=255)
acgaGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGa > 1:141358/1‑93 (MQ=255)
cgaGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGaa < 2:6173626/93‑1 (MQ=255)
gaGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGaaa > 1:374047/1‑93 (MQ=255)
aGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGaaaa < 1:5016069/93‑1 (MQ=255)
aGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGaaaa > 1:5140716/1‑93 (MQ=255)
aGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGaaaa < 1:2560406/93‑1 (MQ=255)
gCTGGCGCTGTATTTCCCGCATGGACTGGTATACAAGGTGGCGTATGAAATCACCTTGTTTGTTAAAGCCTCCATTGTACACGTGGTGTAAAc > 2:5471805/1‑93 (MQ=255)
cTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGCTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACg > 2:2172723/1‑93 (MQ=255)
tGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACgc > 2:3021509/1‑93 (MQ=255)
gcgcGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAACCCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACgctg < 2:3127295/93‑1 (MQ=255)
gcgcGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACgctg < 1:4989315/93‑1 (MQ=255)
cgcgGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACgctgc < 2:767150/93‑1 (MQ=255)
aGTAATTCCCGCATGGGCTGGAACACAAGGTGGCGGATGAAACCCCCTCGTTTGTTAAAGACTCCATTGAAGACGTGGTGAACACGCTGCTgg > 2:2481420/1‑93 (MQ=255)
|
CAGCCTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCAGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACGCTGCTGG > NC_000913/2586468‑2586650
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGCCAGCCTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCAGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACGCTGCTGGA > NC_000913/2586465‑2586651
|
AGCCAGCCTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCG > SRR4302533.789510/1‑94 (MQ=60)
CCAGCCTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGT < SRR4302533.3644028/94‑1 (MQ=60)
CCAGCCTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGT > SRR4302533.5497515/1‑94 (MQ=60)
CCAGCCTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGT > SRR4302533.6289581/1‑94 (MQ=60)
CAGCCTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTA > SRR4302533.4727204/1‑94 (MQ=60)
CCTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTT > SRR4302533.5024140/1‑94 (MQ=60)
CTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTC > SRR4302533.3914155/1‑94 (MQ=60)
CTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTC > SRR4302533.3205882/1‑94 (MQ=60)
TCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCC < SRR4302533.2496133/94‑1 (MQ=60)
TCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGAGCGGTATTTCC < SRR4302533.6316691/94‑1 (MQ=60)
CCGGGCTGGGGGTAAAGCTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCC < SRR4302533.4483202/94‑1 (MQ=60)
CCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCC < SRR4302533.2105984/94‑1 (MQ=60)
GCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCAT < SRR4302533.4386873/94‑1 (MQ=60)
TGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGG < SRR4302533.5664176/94‑1 (MQ=60)
TGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGG < SRR4302533.4402360/94‑1 (MQ=60)
GGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGAC > SRR4302533.2944717/1‑94 (MQ=60)
GGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGAC > SRR4302533.4420165/1‑94 (MQ=60)
GGGTAAAACTGGCCTCCGGCACTAACGAAATGGCGACAGCGGAGGTGGTTCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACT < SRR4302533.4726053/94‑1 (MQ=60)
GGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTG < SRR4302533.3402888/94‑1 (MQ=60)
GTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGG > SRR4302533.1174705/1‑94 (MQ=60)
TAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGA > SRR4302533.3192916/1‑94 (MQ=60)
AAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAA > SRR4302533.432262/1‑94 (MQ=60)
AAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAAT < SRR4302533.1366915/94‑1 (MQ=60)
AACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATA < SRR4302533.1122460/94‑1 (MQ=60)
ACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATAC < SRR4302533.2090807/94‑1 (MQ=60)
CTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACA < SRR4302533.2464252/94‑1 (MQ=60)
GGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAG < SRR4302533.3550811/94‑1 (MQ=60)
GGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAG < SRR4302533.4600469/94‑1 (MQ=60)
GCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGG > SRR4302533.3968909/1‑94 (MQ=60)
CTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTG < SRR4302533.6188583/94‑1 (MQ=60)
TCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGG < SRR4302533.5703580/94‑1 (MQ=60)
CGGCGCTAACGAAATGGCGACAGCGGCGCTGGTGCTCTATCGTCTCGACTGGCTTGCGCGGCATTTCCCGCATGGCCTGGTATACAAGGcgtcc > SRR4302533.3280526/1‑89 (MQ=44)
CGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCG < SRR4302533.55480/94‑1 (MQ=60)
CGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAAGCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCG < SRR4302533.4337145/94‑1 (MQ=60)
GGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGT > SRR4302533.5759032/1‑94 (MQ=60)
GGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGT < SRR4302533.291398/94‑1 (MQ=60)
GCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTA > SRR4302533.2634881/1‑94 (MQ=60)
CGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTAT < SRR4302533.749000/94‑1 (MQ=60)
CGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTAT > SRR4302533.1788482/1‑94 (MQ=60)
CGCTAAAGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTAT < SRR4302533.8780/94‑1 (MQ=60)
AACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAA > SRR4302533.4975618/1‑94 (MQ=60)
ACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAAC > SRR4302533.159858/1‑94 (MQ=60)
ACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAAC < SRR4302533.651035/94‑1 (MQ=60)
ACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAAC < SRR4302533.1090727/94‑1 (MQ=60)
CGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACC < SRR4302533.5917162/94‑1 (MQ=60)
GAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCA < SRR4302533.433731/94‑1 (MQ=60)
GAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCA > SRR4302533.4554098/1‑94 (MQ=60)
GAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCA > SRR4302533.933093/1‑94 (MQ=60)
GAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCA > SRR4302533.2746122/1‑94 (MQ=60)
AAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCAC < SRR4302533.365329/94‑1 (MQ=60)
AATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACC < SRR4302533.1006187/94‑1 (MQ=60)
AATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACC < SRR4302533.2636809/94‑1 (MQ=60)
AATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACC < SRR4302533.71109/94‑1 (MQ=60)
AATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACC < SRR4302533.6173404/94‑1 (MQ=60)
ATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCT < SRR4302533.5867065/94‑1 (MQ=60)
GGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCG < SRR4302533.5417395/94‑1 (MQ=60)
GGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCG < SRR4302533.2572899/94‑1 (MQ=60)
GGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCG > SRR4302533.262514/1‑94 (MQ=60)
GCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGT > SRR4302533.3124501/1‑94 (MQ=60)
CGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTT > SRR4302533.2741610/1‑94 (MQ=60)
GCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTA < SRR4302533.2140778/94‑1 (MQ=60)
GCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTA > SRR4302533.2034632/1‑94 (MQ=60)
CGGAGCTGGTGCTCACTCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAA > SRR4302533.3727793/1‑94 (MQ=60)
GGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAA < SRR4302533.6154131/94‑1 (MQ=60)
GGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAA > SRR4302533.2394084/1‑94 (MQ=60)
GCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCC < SRR4302533.3551190/94‑1 (MQ=60)
GCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCC < SRR4302533.6013413/94‑1 (MQ=60)
GCTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCC < SRR4302533.5867861/94‑1 (MQ=60)
CTGGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCT > SRR4302533.3839532/1‑94 (MQ=60)
GGTGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCC < SRR4302533.2260822/94‑1 (MQ=60)
TGCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCAT > SRR4302533.1828836/1‑94 (MQ=60)
GCTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATT < SRR4302533.3264794/94‑1 (MQ=60)
GCTCAATCGTCTCGACGAGCCAGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATT > SRR4302533.4400495/1‑94 (MQ=60)
CTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTG < SRR4302533.57469/94‑1 (MQ=60)
CTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTG > SRR4302533.1327690/1‑94 (MQ=60)
CTCAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTG < SRR4302533.2205701/94‑1 (MQ=60)
CAATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAA > SRR4302533.4609331/1‑94 (MQ=60)
AATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAG < SRR4302533.826502/94‑1 (MQ=60)
ATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGA < SRR4302533.316635/94‑1 (MQ=60)
ATCGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGA < SRR4302533.1969927/94‑1 (MQ=60)
CGTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGCATACAAGGGGGCGTATGAAACCACCTCGTTTGTTATAGCCTCCATTGAAGACG > SRR4302533.5120020/1‑94 (MQ=60)
GTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAACCCACCTCGTTTGTTAAAGCCTCCATTGAAGACGT < SRR4302533.167905/94‑1 (MQ=60)
GTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGT > SRR4302533.5415765/1‑94 (MQ=60)
GTCTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGT < SRR4302533.1841072/94‑1 (MQ=60)
CTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGG > SRR4302533.5528508/1‑94 (MQ=60)
CTCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGG < SRR4302533.6274095/94‑1 (MQ=60)
TCGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGT < SRR4302533.284975/94‑1 (MQ=60)
CGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTG < SRR4302533.3566552/94‑1 (MQ=60)
CGACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTG > SRR4302533.1915870/1‑94 (MQ=60)
GACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGA < SRR4302533.4442336/94‑1 (MQ=60)
GACGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGA > SRR4302533.142262/1‑94 (MQ=60)
CGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAA < SRR4302533.341004/94‑1 (MQ=60)
CGAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAA > SRR4302533.376307/1‑94 (MQ=60)
GAGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAA > SRR4302533.5171786/1‑94 (MQ=60)
AGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAAC < SRR4302533.2576175/94‑1 (MQ=60)
AGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAAC < SRR4302533.5046457/94‑1 (MQ=60)
AGCTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAAA < SRR4302533.1546557/94‑1 (MQ=60)
CTGGCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACGC > SRR4302533.2848652/1‑94 (MQ=60)
GCGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACGCTGC < SRR4302533.5019564/94‑1 (MQ=60)
CGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACGCTGCT > SRR4302533.4128327/1‑94 (MQ=60)
CGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACGCTGCT < SRR4302533.5860984/94‑1 (MQ=60)
CGCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTAAAGACGTGGTGAAAACGCTGCT > SRR4302533.4495505/1‑94 (MQ=60)
GCGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACGCTGCTG < SRR4302533.1972924/94‑1 (MQ=60)
CGGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACGCTGCTGG > SRR4302533.3141245/1‑94 (MQ=60)
GGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACGCTGCTGGA < SRR4302533.3253671/94‑1 (MQ=60)
GGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACGCTGCTGGA < SRR4302533.3379753/94‑1 (MQ=60)
|
AGCCAGCCTCCGGGCTGGGGGTAAAACTGGCCTCCGGCGCTAACGAAATGGCGACAGCGGAGCTGGTGCTCAATCGTCTCGACGAGCTGGCGCAGTATTTCCCGCATGGACTGGAATACAAGGTGGCGTATGAAACCACCTCGTTTGTTAAAGCCTCCATTGAAGACGTGGTGAAAACGCTGCTGGA > NC_000913/2586465‑2586651
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
