Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,690,602 T→C T988A (ACT→GCT)  purL ← phosphoribosylformyl‑glycineamide synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,690,6020TC100.0% 722.4 / NA 220T988A (ACT→GCT) purLphosphoribosylformyl‑glycineamide synthetase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (101/119);  total (101/119)

Only 100 of 224 total aligned reads displayed.

TCAGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGTTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAACC  >  NC_000913/2690512‑2690690
                                                                                          |                                                                                        
tCAGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGctt                                                                                        <  2:4823570/93‑1 (MQ=255)
 cAGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTc                                                                                       <  1:5385904/93‑1 (MQ=255)
  aGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCt                                                                                      <  1:4803026/93‑1 (MQ=255)
   ggCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTg                                                                                     >  2:2565055/1‑93 (MQ=255)
    gCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGc                                                                                    <  1:2281/93‑1 (MQ=255)
     cccGCATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCGCACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGcc                                                                                   <  1:2172095/93‑1 (MQ=255)
      ccGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGccc                                                                                  <  2:508016/93‑1 (MQ=255)
      ccGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGccc                                                                                  >  1:2464273/1‑93 (MQ=255)
      ccGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGCTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGccc                                                                                  >  1:5774063/1‑93 (MQ=255)
        ggATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCccac                                                                                <  1:1565533/93‑1 (MQ=255)
         gATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCccacc                                                                               >  2:3247133/1‑93 (MQ=255)
          aTCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCccacca                                                                              <  1:4279853/93‑1 (MQ=255)
          aTCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCccacca                                                                              >  2:1780874/1‑93 (MQ=255)
           tCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAg                                                                             <  2:5315084/93‑1 (MQ=255)
             ggCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGac                                                                           >  1:515903/1‑93 (MQ=255)
             ggCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGac                                                                           <  1:5027437/93‑1 (MQ=255)
              gCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGaca                                                                          >  1:6112341/1‑93 (MQ=255)
              gCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGaca                                                                          >  2:3616010/1‑93 (MQ=255)
              gCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGaca                                                                          <  2:312557/93‑1 (MQ=255)
              gCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGaca                                                                          >  1:1709295/1‑93 (MQ=255)
               cgtcgtTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGacac                                                                         <  2:749680/93‑1 (MQ=255)
                  cgtTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCa                                                                      <  1:420815/93‑1 (MQ=255)
                   gtTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCaa                                                                     <  2:1860354/93‑1 (MQ=255)
                    ttAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAAc                                                                    <  1:3433812/93‑1 (MQ=255)
                    ttAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAAc                                                                    >  2:612583/1‑93 (MQ=255)
                    ttAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAAc                                                                    >  1:1805564/1‑93 (MQ=255)
                    ttAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAAc                                                                    <  1:1428678/93‑1 (MQ=255)
                    ttAGATTTCACCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAAc                                                                    >  2:905958/1‑93 (MQ=255)
                    gtAGATTTCGCCTGATGCTCCTGATCGGCACTCTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAAc                                                                    <  2:4324252/92‑1 (MQ=255)
                     tAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACg                                                                   >  2:1737852/1‑93 (MQ=255)
                      aGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACgt                                                                  <  2:1641908/93‑1 (MQ=255)
                        aTTTCGCCTGATGCTCCTGATCGGCACACTCCGGGGTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACgtgg                                                                >  2:6002101/1‑93 (MQ=255)
                         tttCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACgtggt                                                               >  2:2314417/1‑93 (MQ=255)
                         tttCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACgtggt                                                               <  1:5263110/93‑1 (MQ=255)
                         tttCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACgtggt                                                               <  2:1510943/93‑1 (MQ=255)
                           tCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGc                                                             <  1:3019903/93‑1 (MQ=255)
                           tCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGc                                                             >  1:1622895/1‑93 (MQ=255)
                              ccTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGc                                                          <  1:2217320/93‑1 (MQ=255)
                               cTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCt                                                         >  1:5969688/1‑93 (MQ=255)
                                tGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCtt                                                        <  2:2635846/93‑1 (MQ=255)
                                tGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCtt                                                        <  1:4491837/93‑1 (MQ=255)
                                 gATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCttt                                                       <  1:5478155/93‑1 (MQ=255)
                                  aTGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTc                                                      <  1:3687482/93‑1 (MQ=255)
                                    tcTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGc                                                    <  2:6237970/92‑1 (MQ=255)
                                      tCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTg                                                  <  2:2959129/93‑1 (MQ=255)
                                        cTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGaa                                                <  2:2945887/93‑1 (MQ=255)
                                         tGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAAt                                               <  2:802703/93‑1 (MQ=255)
                                          gATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATa                                              <  1:3263860/93‑1 (MQ=255)
                                          gATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATa                                              <  2:5812056/93‑1 (MQ=255)
                                             gggCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAg                                           >  1:4080387/2‑93 (MQ=255)
                                             cGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAg                                           >  2:1338556/1‑93 (MQ=255)
                                              ggCCCACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGt                                          <  2:4686036/93‑1 (MQ=255)
                                               gCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTc                                         <  2:1041205/93‑1 (MQ=255)
                                               gCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTc                                         <  2:4784954/93‑1 (MQ=255)
                                               gCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTc                                         >  1:1885696/1‑93 (MQ=255)
                                               gCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTc                                         >  1:5843884/1‑93 (MQ=255)
                                                cacaCTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGCCACGCAACGTGGTGCGGCTTTCGCTCAATACAGTCt                                        <  2:2780734/93‑1 (MQ=255)
                                                cacaCTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCt                                        >  1:1276627/1‑93 (MQ=255)
                                                cacaCTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCt                                        <  2:2073635/93‑1 (MQ=255)
                                                cacaCTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCt                                        >  1:4461263/1‑93 (MQ=255)
                                                cacaCTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCt                                        >  1:1264547/1‑93 (MQ=255)
                                                   ccTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGcc                                     <  2:4973796/92‑1 (MQ=255)
                                                   acTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGcc                                     >  2:5529752/1‑93 (MQ=255)
                                                   acTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGcc                                     <  1:485931/93‑1 (MQ=255)
                                                       cGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCTACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGtt                                 <  2:6214715/93‑1 (MQ=255)
                                                       cGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGtt                                 >  2:1999996/1‑93 (MQ=255)
                                                       cGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGtt                                 <  1:4012209/93‑1 (MQ=255)
                                                        gggTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTg                                >  2:2166272/1‑93 (MQ=255)
                                                         ggTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTgg                               <  1:6261769/93‑1 (MQ=255)
                                                          gTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGc                              <  2:1743023/93‑1 (MQ=255)
                                                           ttGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCg                             <  2:4906478/93‑1 (MQ=255)
                                                            tGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCgg                            <  1:3343595/93‑1 (MQ=255)
                                                                  gCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATca                      <  2:4840493/93‑1 (MQ=255)
                                                                   cAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATcac                     <  1:5636321/93‑1 (MQ=255)
                                                                   cAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATcac                     <  1:1872465/93‑1 (MQ=255)
                                                                    aGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATcaca                    <  1:2819785/93‑1 (MQ=255)
                                                                     ggCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTgg                               >  1:3799538/1‑81 (MQ=255)
                                                                     ggCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTgg                               <  2:3799538/81‑1 (MQ=255)
                                                                     ggCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACaa                   >  2:309207/1‑93 (MQ=255)
                                                                     ggCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACaa                   >  2:3988019/1‑93 (MQ=255)
                                                                     ggCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACaa                   <  2:4416533/93‑1 (MQ=255)
                                                                       cgcTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACaaaa                 <  2:337910/93‑1 (MQ=255)
                                                                       cgcTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACaaaa                 <  2:242907/93‑1 (MQ=255)
                                                                        gcTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAAc                <  1:4532533/93‑1 (MQ=255)
                                                                        gcTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAAc                >  1:3522199/1‑93 (MQ=255)
                                                                           gCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACTGt             >  1:757202/1‑93 (MQ=255)
                                                                           gCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGt             <  1:6205711/93‑1 (MQ=255)
                                                                            cATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTc            <  2:5382615/93‑1 (MQ=255)
                                                                             aTCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCa           >  2:3525202/1‑93 (MQ=255)
                                                                              tCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCAc          >  2:5159394/1‑93 (MQ=255)
                                                                              tCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCAc          >  2:5410622/1‑93 (MQ=255)
                                                                              tCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCAc          >  1:3832447/1‑93 (MQ=255)
                                                                              tCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCAc          <  2:4648642/93‑1 (MQ=255)
                                                                              tCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCAc          >  1:3411059/1‑93 (MQ=255)
                                                                              tCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCAc          >  2:2214808/1‑93 (MQ=255)
                                                                                tGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCg        <  2:5481525/93‑1 (MQ=255)
                                                                                tGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCg        <  2:4556433/93‑1 (MQ=255)
                                                                                tGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCg        >  2:333680/1‑93 (MQ=255)
                                                                                     ggTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAAc   >  1:230456/1‑93 (MQ=255)
                                                                                     ggTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAAc   >  1:909550/1‑93 (MQ=255)
                                                                                          |                                                                                        
TCAGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGTTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAACC  >  NC_000913/2690512‑2690690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CATTCAGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGTTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAACCGCCTG  >  NC_000913/2690509‑2690695
                                                                                             |                                                                                             
CATTCAGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGC                                                                                               >  SRR4302533.4803763/1‑94 (MQ=60)
CATTCAGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGC                                                                                               >  SRR4302533.911860/1‑94 (MQ=60)
 ATTCAGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCT                                                                                              <  SRR4302533.3271652/94‑1 (MQ=60)
 ATTCAGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCT                                                                                              >  SRR4302533.4006820/1‑94 (MQ=60)
 ATTCAGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCT                                                                                              >  SRR4302533.4858354/1‑94 (MQ=60)
    CAGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCT                                                                                           <  SRR4302533.5418263/94‑1 (MQ=60)
    CAGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCT                                                                                           <  SRR4302533.634355/94‑1 (MQ=60)
     AGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTG                                                                                          <  SRR4302533.4832115/94‑1 (MQ=60)
     AGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTG                                                                                          >  SRR4302533.4925296/1‑94 (MQ=60)
     AGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTG                                                                                          <  SRR4302533.2063226/94‑1 (MQ=60)
       GCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCC                                                                                        <  SRR4302533.2298/94‑1 (MQ=60)
        CCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCC                                                                                       >  SRR4302533.2479473/1‑94 (MQ=60)
        CCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGCTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCC                                                                                       >  SRR4302533.5808935/1‑94 (MQ=60)
        CCCGCATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCGCACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCC                                                                                       <  SRR4302533.2185449/94‑1 (MQ=60)
         CCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCA                                                                                      >  SRR4302533.4856424/1‑94 (MQ=60)
         CCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCA                                                                                      >  SRR4302533.5386383/1‑94 (MQ=60)
           GGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACC                                                                                    <  SRR4302533.1574961/94‑1 (MQ=60)
             ATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAG                                                                                  <  SRR4302533.4305586/94‑1 (MQ=60)
             ATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAG                                                                                  <  SRR4302533.1879797/94‑1 (MQ=60)
               CGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGAC                                                                                >  SRR4302533.2833954/1‑94 (MQ=60)
               CGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGAC                                                                                >  SRR4302533.518965/1‑94 (MQ=60)
                GGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACA                                                                               >  SRR4302533.6149233/1‑94 (MQ=60)
                GGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACA                                                                               >  SRR4302533.6215881/1‑94 (MQ=60)
                GGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACA                                                                               >  SRR4302533.1719652/1‑94 (MQ=60)
                GGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACA                                                                               <  SRR4302533.5057880/94‑1 (MQ=60)
                    TCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCCGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCA                                                                           >  SRR4302533.2283399/1‑94 (MQ=60)
                     CGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAA                                                                          <  SRR4302533.423332/94‑1 (MQ=60)
                     CGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAA                                                                          >  SRR4302533.1274399/1‑94 (MQ=60)
                      GTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAAC                                                                         <  SRR4302533.3302222/94‑1 (MQ=60)
                      GTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAAC                                                                         >  SRR4302533.3323178/1‑94 (MQ=60)
                      GTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAAC                                                                         >  SRR4302533.4491920/1‑94 (MQ=60)
                      GTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAAC                                                                         >  SRR4302533.4317973/1‑94 (MQ=60)
                      GTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAAC                                                                         >  SRR4302533.5094395/1‑94 (MQ=60)
                      GTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAAC                                                                         >  SRR4302533.1816554/1‑94 (MQ=60)
                       TTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACG                                                                        <  SRR4302533.1437318/94‑1 (MQ=60)
                       TTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACG                                                                        <  SRR4302533.3730950/94‑1 (MQ=60)
                       TTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACG                                                                        <  SRR4302533.3455026/94‑1 (MQ=60)
                         AGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTG                                                                      >  SRR4302533.1702051/1‑94 (MQ=60)
                          GATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGG                                                                     <  SRR4302533.4062181/94‑1 (MQ=60)
                          GATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGG                                                                     <  SRR4302533.1742522/94‑1 (MQ=60)
                           ATTTCGCCTGATGCGCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGT                                                                    <  SRR4302533.6066186/94‑1 (MQ=60)
                            TTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTG                                                                   <  SRR4302533.5294702/94‑1 (MQ=60)
                             TTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGC                                                                  >  SRR4302533.1632726/1‑94 (MQ=60)
                              TCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCG                                                                 <  SRR4302533.145299/94‑1 (MQ=60)
                              TCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCG                                                                 <  SRR4302533.2046677/94‑1 (MQ=60)
                              TCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCG                                                                 <  SRR4302533.3038389/94‑1 (MQ=60)
                                GCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGC                                                               >  SRR4302533.5826345/1‑94 (MQ=60)
                                GCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGC                                                               >  SRR4302533.3218124/1‑94 (MQ=60)
                                 CCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCT                                                              >  SRR4302533.6005824/1‑94 (MQ=60)
                                 CCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCT                                                              <  SRR4302533.2231009/94‑1 (MQ=60)
                                   TGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTT                                                            <  SRR4302533.4649607/94‑1 (MQ=60)
                                   TGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTT                                                            <  SRR4302533.5751059/94‑1 (MQ=60)
                                   TGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTT                                                            <  SRR4302533.4519038/94‑1 (MQ=60)
                                   TGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTT                                                            >  SRR4302533.2206437/1‑94 (MQ=60)
                                    GATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTC                                                           <  SRR4302533.5492381/94‑1 (MQ=60)
                                    GATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTC                                                           <  SRR4302533.5511178/94‑1 (MQ=60)
                                     ATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCG                                                          <  SRR4302533.3710144/94‑1 (MQ=60)
                                       actactgagCGGCACCCTCCGGGTTGTCACTCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCT                                                        <  SRR4302533.6252127/85‑1 (MQ=60)
                                        CTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTG                                                       >  SRR4302533.5627375/1‑94 (MQ=60)
                                        CTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTG                                                       >  SRR4302533.5558163/1‑94 (MQ=60)
                                         TCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGTCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGA                                                      >  SRR4302533.862027/1‑94 (MQ=60)
                                          CCTGATCGTCACACTCCGGGTTGTCGCGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAA                                                     <  SRR4302533.4152153/94‑1 (MQ=60)
                                           CTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAAT                                                    >  SRR4302533.170361/1‑94 (MQ=60)
                                            TGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATA                                                   <  SRR4302533.5229557/94‑1 (MQ=60)
                                             GATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATAC                                                  <  SRR4302533.3283992/94‑1 (MQ=60)
                                               TGGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAG                                                >  SRR4302533.4105227/1‑94 (MQ=60)
                                                CGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGT                                               <  SRR4302533.1893152/94‑1 (MQ=60)
                                                CGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGT                                               >  SRR4302533.4260196/1‑94 (MQ=60)
                                                 GGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTC                                              >  SRR4302533.5879216/1‑94 (MQ=60)
                                                 GGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTC                                              >  SRR4302533.1897215/1‑94 (MQ=60)
                                                  GCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCT                                             >  SRR4302533.4488247/1‑94 (MQ=60)
                                                  GCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCT                                             >  SRR4302533.1272114/1‑94 (MQ=60)
                                                  GCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCT                                             >  SRR4302533.1284300/1‑94 (MQ=60)
                                                  CCACACTCCGAGTTGACACGCAGCCTCTGCATCTGCAATTTAGCTTCTGCCCACCAAACACTCATCGTGTTGCGGCTTTCGCTGAATACAGTCT                                             <  SRR4302533.1969850/94‑1 (MQ=21)
                                                     CACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCC                                          <  SRR4302533.3679394/94‑1 (MQ=60)
                                                      ACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCC                                         <  SRR4302533.488838/94‑1 (MQ=60)
                                                          CGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTG                                     <  SRR4302533.4036641/94‑1 (MQ=60)
                                                            GGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGC                                   <  SRR4302533.6299204/94‑1 (MQ=60)
                                                               TGTCACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGT                                <  SRR4302533.3364257/94‑1 (MQ=60)
                                                                  CACGCAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAAT                             >  SRR4302533.3599477/1‑94 (MQ=60)
                                                                   ACGCAGGCGCTGCATCTGCCAGCTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATC                            <  SRR4302533.5107501/94‑1 (MQ=60)
                                                                    CGCAGGCGCTGCACCGGCCAGGTAGCTTCTGCCCACCAGACGCGAAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCA                           <  SRR4302533.3005680/94‑1 (MQ=60)
                                                                      CAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACA                         >  SRR4302533.3514145/1‑94 (MQ=60)
                                                                      CAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACA                         <  SRR4302533.5670404/94‑1 (MQ=60)
                                                                      CAGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACA                         <  SRR4302533.1883881/94‑1 (MQ=60)
                                                                       AGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCatacagcagat                        >  SRR4302533.3822797/1‑83 (MQ=60)
                                                                       AGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAA                        >  SRR4302533.801867/1‑94 (MQ=60)
                                                                       AGGCGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAA                        <  SRR4302533.2837136/94‑1 (MQ=60)
                                                                          CGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAAC                     <  SRR4302533.3846626/94‑1 (MQ=60)
                                                                          CGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAAC                     >  SRR4302533.3444548/1‑94 (MQ=60)
                                                                          CGCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAAC                     >  SRR4302533.3543909/1‑94 (MQ=60)
                                                                           GCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACG                    <  SRR4302533.4559977/94‑1 (MQ=60)
                                                                           GCTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACG                    <  SRR4302533.4559976/94‑1 (MQ=60)
                                                                            CTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGG                   >  SRR4302533.241674/1‑94 (MQ=60)
                                                                            CTGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGG                   >  SRR4302533.2296004/1‑94 (MQ=60)
                                                                             TGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACTGT                  >  SRR4302533.761658/1‑94 (MQ=60)
                                                                             TGCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGT                  >  SRR4302533.1619534/1‑94 (MQ=60)
                                                                              GCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTC                 <  SRR4302533.402314/94‑1 (MQ=60)
                                                                              GCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTC                 <  SRR4302533.6242929/94‑1 (MQ=60)
                                                                              GCATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTC                 <  SRR4302533.6043761/94‑1 (MQ=60)
                                                                               CATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCA                <  SRR4302533.4094022/94‑1 (MQ=60)
                                                                                ATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCAC               >  SRR4302533.3855872/1‑94 (MQ=60)
                                                                                ATCTGCCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCAC               >  SRR4302533.3432128/1‑94 (MQ=60)
                                                                                     CCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAA          >  SRR4302533.132243/1‑94 (MQ=60)
                                                                                     CCAGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAA          >  SRR4302533.4541344/1‑94 (MQ=60)
                                                                                       AGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAAC        >  SRR4302533.231884/1‑94 (MQ=60)
                                                                                       AGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAAC        >  SRR4302533.914884/1‑94 (MQ=60)
                                                                                       AGGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAAC        >  SRR4302533.2457733/1‑94 (MQ=60)
                                                                                        GGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAACC       >  SRR4302533.5936498/1‑94 (MQ=60)
                                                                                        GGTAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAACC       <  SRR4302533.3381840/94‑1 (MQ=60)
                                                                                          TAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAACCGC     >  SRR4302533.2714280/1‑94 (MQ=60)
                                                                                          TAGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAACCGC     >  SRR4302533.2722587/1‑94 (MQ=60)
                                                                                           AGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAACCGCC    >  SRR4302533.1904187/1‑94 (MQ=60)
                                                                                           AGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAACCGCC    >  SRR4302533.3470001/1‑94 (MQ=60)
                                                                                           AGCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAACCGCC    >  SRR4302533.5043319/1‑94 (MQ=60)
                                                                                            GCTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAACCGCCT   >  SRR4302533.1139034/1‑94 (MQ=60)
                                                                                             CTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAACCGCCTG  >  SRR4302533.2773486/1‑94 (MQ=60)
                                                                                             CTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAACCGCCTG  >  SRR4302533.1337890/1‑94 (MQ=60)
                                                                                             |                                                                                             
CATTCAGGCCCGGATCGGCGTCGTTAGATTTCGCCTGATGCTCCTGATCGGCACACTCCGGGTTGTCACGCAGGCGCTGCATCTGCCAGGTAGTTTCTGCCCACCAGACACGCAACGTGGTGCGGCTTTCGCTGAATACAGTCTGCCCGTTGGCGGTAATCACAAAACGGTCACCGGAAACCGCCTG  >  NC_000913/2690509‑2690695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑