Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1624 |
250.6 |
12620048 |
98.0% |
12367647 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,735,733 |
(G)6→7 |
intergenic (+67/‑32) |
pheL → / → pheA |
PheL/chorismate mutase‑P |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,735,727 | 1 | . | G | 94.9%
| 668.2
/ 26.3
| 217 | intergenic (+61/‑38) | pheL/pheA | PheL/chorismate mutase‑P |
| Reads supporting (aligned to +/- strand): ref base . (9/2); new base G (96/110); total (105/112) |
| Fisher's exact test for biased strand distribution p-value = 2.94e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 252 total aligned reads displayed.
TTTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTG > NC_000913/2735635‑2735815
|
tttCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑g < 2:5007836/93‑1 (MQ=255)
tttCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑g < 2:5915761/93‑1 (MQ=255)
tttCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑g < 2:2880783/93‑1 (MQ=255)
ttcttcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑gg > 1:707007/1‑93 (MQ=255)
tcttcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑ggg > 1:4995002/1‑93 (MQ=255)
cttcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑gggg > 2:3320656/1‑93 (MQ=255)
ttcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑ggggg < 1:349695/93‑1 (MQ=255)
ttcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑ggggg < 1:5960987/93‑1 (MQ=255)
tcGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑gggggg < 1:185538/93‑1 (MQ=255)
cccATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑ggggggg < 1:4932004/91‑2 (MQ=255)
gCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑gggggggc > 1:5530233/1‑91 (MQ=255)
gCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑gggggggc > 1:1306963/1‑91 (MQ=255)
cATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑gggggggcc > 2:4588952/1‑90 (MQ=255)
aTTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑gggggggcct > 2:4431919/1‑89 (MQ=255)
tCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑GGGGGGGCcttt > 1:4706677/1‑93 (MQ=255)
tCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑GGGGGGGCcttt > 2:562920/1‑93 (MQ=255)
cTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑GGGGGGGCctttt > 1:3162911/1‑93 (MQ=255)
tttttACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCtttttt > 1:4333011/1‑93 (MQ=255)
ttttACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTa < 2:1077102/93‑1 (MQ=255)
ttACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTAtt < 2:429235/93‑1 (MQ=255)
ttACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTAtt < 2:2740206/93‑1 (MQ=255)
tACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTg > 2:534003/1‑93 (MQ=255)
tACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTg > 2:3759440/1‑93 (MQ=255)
ccTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGAt > 1:4439816/1‑93 (MQ=255)
ccTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGAt < 2:446588/93‑1 (MQ=255)
cTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATa > 2:1591683/1‑93 (MQ=255)
cTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATa < 2:6057726/93‑1 (MQ=255)
cTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATa < 1:5733854/93‑1 (MQ=255)
ttCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTTATaa > 2:2267937/1‑93 (MQ=255)
ttCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATaa > 2:2692506/1‑93 (MQ=255)
ttCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATaa > 2:2994308/1‑93 (MQ=255)
ttCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATaa > 1:1438718/1‑93 (MQ=255)
ttCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATaa < 1:1771856/93‑1 (MQ=255)
tCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATaaa > 2:5487570/1‑92 (MQ=255)
tCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAAc < 1:4719939/93‑1 (MQ=255)
ccTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACaaa < 2:5237350/93‑1 (MQ=255)
ccTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACaaa < 1:2995258/93‑1 (MQ=255)
ccTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACaaa > 2:3668294/1‑93 (MQ=255)
cTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACaaaa > 1:2063898/1‑93 (MQ=255)
cTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACaaaa > 2:2373732/1‑93 (MQ=255)
cTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACaaaa > 2:4148956/1‑93 (MQ=255)
tGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACaaaaa > 2:1101373/1‑93 (MQ=255)
gAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAg > 2:18540/1‑93 (MQ=255)
aaTGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAgg < 2:428721/93‑1 (MQ=255)
aaTGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAgg < 1:6224053/93‑1 (MQ=255)
tGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCa < 2:5802936/93‑1 (MQ=255)
gggAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCaa < 1:4920933/93‑1 (MQ=255)
gggAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCaa < 2:1961735/93‑1 (MQ=255)
gggAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCaa > 2:1690789/1‑93 (MQ=255)
gggAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCaa < 1:6051597/93‑1 (MQ=255)
gAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAaca < 1:5119935/93‑1 (MQ=255)
aGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAacac > 1:4812706/1‑93 (MQ=255)
aGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAacac < 2:2156457/93‑1 (MQ=255)
cGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTAt < 2:6033303/93‑1 (MQ=255)
gTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATg > 2:621700/1‑93 (MQ=255)
tttCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATGG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGa < 1:4442008/93‑1 (MQ=255)
tttCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGa < 2:7882/93‑1 (MQ=255)
tttCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGa > 2:3486784/1‑93 (MQ=255)
tatcgtcgTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGa > 2:3976108/3‑93 (MQ=255)
tcgtcgTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACa > 1:315521/1‑93 (MQ=255)
gtcgtGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATc > 2:5360900/1‑93 (MQ=255)
tcgtGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCg > 2:479533/1‑93 (MQ=255)
tcgtGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCg < 2:4651718/93‑1 (MQ=255)
tcgtGTGAAACAGAACGCGAAGACGAACAATAAGGCCTCCCAAATCGGGGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATc < 1:854214/93‑1 (MQ=255)
gtgtGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGa > 1:6198271/1‑93 (MQ=255)
gtgtGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGa < 1:1508718/93‑1 (MQ=255)
tgtgAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGaa < 1:3087169/93‑1 (MQ=255)
tgAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGaaaa < 2:4141839/93‑1 (MQ=255)
gAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAAc < 1:4028441/93‑1 (MQ=255)
aaaCAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAAcc > 1:2419356/1‑93 (MQ=255)
cAGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGt > 1:3435669/1‑93 (MQ=255)
aGAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGtt < 2:2956919/93‑1 (MQ=255)
gAATGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTa > 1:2201550/1‑93 (MQ=255)
aaTGCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTAc < 1:5859218/93‑1 (MQ=255)
gCGAAGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTgg < 2:2620472/93‑1 (MQ=255)
aaGACGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGgcgc < 1:4575679/93‑1 (MQ=255)
aCGAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGc < 2:5415611/93‑1 (MQ=255)
gAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCga < 1:4660544/93‑1 (MQ=255)
gAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCga > 2:4740698/1‑93 (MQ=255)
gAACAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCga > 2:1732220/1‑93 (MQ=255)
aCAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCgaga < 1:544881/93‑1 (MQ=255)
cAATAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCgagag < 1:3812436/93‑1 (MQ=255)
aaTAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCgagaga > 1:2882402/1‑93 (MQ=255)
tAAGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGaaa < 1:2254186/93‑1 (MQ=255)
aGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAAt > 2:3244800/1‑93 (MQ=255)
aGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAAt < 1:1611416/93‑1 (MQ=255)
aGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAAt > 2:3447760/1‑93 (MQ=255)
aGGCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAAt < 2:3607760/93‑1 (MQ=255)
gCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCa > 2:5592776/1‑93 (MQ=255)
gCCTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCa > 2:1517814/1‑93 (MQ=255)
ccTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAg < 2:1393708/93‑1 (MQ=255)
cTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAgc < 1:4796458/93‑1 (MQ=255)
cTCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAgc > 1:366606/1‑93 (MQ=255)
tCCCAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAgcg > 2:409865/1‑93 (MQ=255)
cccAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAgcgc < 1:1553845/93‑1 (MQ=255)
ccAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAgcgcg > 2:2553386/1‑93 (MQ=255)
cAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAgcgcgc > 1:3908209/1‑93 (MQ=255)
cAAATCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAgcgcgc < 1:2741813/93‑1 (MQ=255)
aaaTCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCt < 1:1724111/93‑1 (MQ=255)
aaaTCG‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCt > 2:849064/1‑93 (MQ=255)
|
TTTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATC‑‑GGGGGGCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTG > NC_000913/2735635‑2735815
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑C‑‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGATGAAAAA > NC_000913/2735640‑2735824
|
TTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑C‑‑GGGGGG > SRR4302533.4145107/1‑94 (MQ=60)
TTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑C‑‑GGGGGG > SRR4302533.3318919/1‑94 (MQ=60)
TTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑C‑‑GGGGGG < SRR4302533.5997050/94‑1 (MQ=60)
TTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑C‑‑GGGGGG < SRR4302533.351827/94‑1 (MQ=60)
TTCCCAATCTTTTTGACCCTCCCGTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑C‑‑GGGGGG < SRR4302533.488788/94‑1 (MQ=60)
TCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑C‑‑GGGGGG‑G < SRR4302533.186690/94‑1 (MQ=60)
TCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑C‑‑GGGGGG‑G > SRR4302533.363252/1‑94 (MQ=60)
CGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑C‑‑GGGGGG‑GC > SRR4302533.5563617/1‑94 (MQ=60)
CGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑C‑‑GGGGGG‑GC > SRR4302533.1314812/1‑94 (MQ=60)
CCCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑C‑‑GGGGGG‑GC < SRR4302533.4961872/94‑1 (MQ=60)
ATTCTTTTTTTCCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTT < SRR4302533.3169813/94‑1 (MQ=60)
ATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTT > SRR4302533.598347/1‑94 (MQ=60)
ATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTT > SRR4302533.1965342/1‑94 (MQ=60)
ATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTT > SRR4302533.3091269/1‑94 (MQ=60)
ATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTT > SRR4302533.5353095/1‑94 (MQ=60)
TTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTT > SRR4302533.4735202/1‑94 (MQ=60)
TCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTT > SRR4302533.3182380/1‑94 (MQ=60)
CTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTT > SRR4302533.3513575/1‑94 (MQ=60)
CTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTT > SRR4302533.3760754/1‑94 (MQ=60)
TTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTT > SRR4302533.4359118/1‑94 (MQ=60)
TTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTT < SRR4302533.183939/94‑1 (MQ=60)
TTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTA < SRR4302533.1551864/94‑1 (MQ=60)
TTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATT < SRR4302533.3863806/94‑1 (MQ=60)
TACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGA < SRR4302533.2654772/94‑1 (MQ=60)
ACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGAT > SRR4302533.2266750/1‑94 (MQ=60)
ACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGAT > SRR4302533.4466653/1‑94 (MQ=60)
CCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATA > SRR4302533.1759237/1‑94 (MQ=60)
CCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATA < SRR4302533.3667833/94‑1 (MQ=60)
CTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAA > SRR4302533.3177650/1‑94 (MQ=60)
CTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAA > SRR4302533.4151613/1‑94 (MQ=60)
CTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAA > SRR4302533.1447401/1‑94 (MQ=60)
CTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAA < SRR4302533.5768471/94‑1 (MQ=60)
TTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAAC < SRR4302533.6270466/94‑1 (MQ=60)
TTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAAC < SRR4302533.1782644/94‑1 (MQ=60)
TCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACA > SRR4302533.444807/1‑94 (MQ=60)
TCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACA < SRR4302533.4748559/94‑1 (MQ=60)
CCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAA > SRR4302533.2898382/1‑94 (MQ=60)
CCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAA > SRR4302533.2076620/1‑94 (MQ=60)
CCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAA < SRR4302533.3013576/94‑1 (MQ=60)
TGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAG > SRR4302533.5343297/1‑94 (MQ=60)
GAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGG > SRR4302533.4701263/1‑94 (MQ=60)
AATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGC < SRR4302533.6261351/94‑1 (MQ=60)
ATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCA < SRR4302533.597969/94‑1 (MQ=60)
TGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAA > SRR4302533.1928945/1‑94 (MQ=60)
GGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAAC < SRR4302533.6088254/94‑1 (MQ=60)
GGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAAC < SRR4302533.4950742/94‑1 (MQ=60)
GAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACAC > SRR4302533.4841874/1‑94 (MQ=60)
GAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACAC < SRR4302533.5150868/94‑1 (MQ=60)
GCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTAT < SRR4302533.3436855/94‑1 (MQ=60)
GTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGA > SRR4302533.2556937/1‑94 (MQ=60)
GTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATAA > SRR4302533.188661/1‑94 (MQ=60)
TTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAATGG‑‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGAC < SRR4302533.4468866/94‑1 (MQ=60)
TTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGAC < SRR4302533.4466654/94‑1 (MQ=60)
TTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACA > SRR4302533.4405681/1‑94 (MQ=60)
TTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACA > SRR4302533.317447/1‑94 (MQ=60)
TTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACA < SRR4302533.5712179/94‑1 (MQ=60)
TCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACAT > SRR4302533.1568612/1‑94 (MQ=60)
CGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATC < SRR4302533.658833/94‑1 (MQ=60)
CGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATC < SRR4302533.1453441/94‑1 (MQ=60)
TCGTGTGAAACAGAACGCGAAGACGAACAATAAGGCCTCCCAAAT‑CGGGGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCG < SRR4302533.859219/94‑1 (MQ=60)
CGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGA > SRR4302533.6235453/1‑94 (MQ=60)
GTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAA < SRR4302533.1593503/94‑1 (MQ=60)
GTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAA > SRR4302533.4836936/1‑94 (MQ=60)
GTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAA < SRR4302533.1517814/94‑1 (MQ=60)
GTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAA > SRR4302533.3043918/1‑94 (MQ=60)
TGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAA < SRR4302533.3106150/94‑1 (MQ=60)
GTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAA > SRR4302533.2990823/1‑94 (MQ=60)
GAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACC < SRR4302533.447111/94‑1 (MQ=60)
GAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACC < SRR4302533.6043874/94‑1 (MQ=60)
GAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACC < SRR4302533.4052961/94‑1 (MQ=60)
GAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACC > SRR4302533.2434299/1‑94 (MQ=60)
AAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCC < SRR4302533.4958349/94‑1 (MQ=60)
AAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCC < SRR4302533.1478726/94‑1 (MQ=60)
AACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCG > SRR4302533.5016684/1‑94 (MQ=60)
ACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGT > SRR4302533.3456894/1‑94 (MQ=60)
CAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTT < SRR4302533.1733191/94‑1 (MQ=60)
AGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTA > SRR4302533.2215117/1‑94 (MQ=60)
GAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTAC < SRR4302533.2218585/94‑1 (MQ=60)
AATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACT < SRR4302533.5894640/94‑1 (MQ=60)
AATGCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACT < SRR4302533.470439/94‑1 (MQ=60)
ATGCGAAGACTAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTG < SRR4302533.3973079/94‑1 (MQ=60)
GCGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGC < SRR4302533.5586276/94‑1 (MQ=60)
CGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCG > SRR4302533.1756088/1‑94 (MQ=60)
CGAAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCG < SRR4302533.4979815/94‑1 (MQ=60)
AAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCT > SRR4302533.4744458/1‑94 (MQ=60)
AAGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCT < SRR4302533.4603407/94‑1 (MQ=60)
AGACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTG < SRR4302533.6145894/94‑1 (MQ=60)
ACGAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCG < SRR4302533.992680/94‑1 (MQ=60)
GAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAG < SRR4302533.4688787/94‑1 (MQ=60)
GAACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAG < SRR4302533.5535802/94‑1 (MQ=60)
ACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAG < SRR4302533.3159514/94‑1 (MQ=60)
ACAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAG < SRR4302533.548117/94‑1 (MQ=60)
CAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGA > SRR4302533.6102835/1‑94 (MQ=60)
CAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGA < SRR4302533.3835752/94‑1 (MQ=60)
CAATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGA > SRR4302533.2900132/1‑94 (MQ=60)
AATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAA > SRR4302533.760447/1‑94 (MQ=60)
AATAAGGCCTCCCAAAT‑C‑‑GGGGGGTCCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAA < SRR4302533.4603675/94‑1 (MQ=60)
ATAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAA < SRR4302533.2192139/94‑1 (MQ=60)
ATAAGGCCCCCCAAAA‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAA < SRR4302533.2286947/94‑1 (MQ=60)
TAAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAA < SRR4302533.2268125/94‑1 (MQ=60)
AAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAAT > SRR4302533.4867736/1‑94 (MQ=60)
AAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAAT > SRR4302533.5065538/1‑94 (MQ=60)
AAGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAAT < SRR4302533.4785918/94‑1 (MQ=60)
AGGCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATC < SRR4302533.1621186/94‑1 (MQ=60)
GCCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAG > SRR4302533.4493977/1‑94 (MQ=60)
CCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGC > SRR4302533.368825/1‑94 (MQ=60)
CCTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGC > SRR4302533.5773798/1‑94 (MQ=60)
CTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCG > SRR4302533.6237587/1‑94 (MQ=60)
CTCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCG < SRR4302533.4825514/94‑1 (MQ=60)
TCCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGC < SRR4302533.2990769/94‑1 (MQ=60)
CCCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCG < SRR4302533.1563201/94‑1 (MQ=60)
CCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGC < SRR4302533.3857645/94‑1 (MQ=60)
CCAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGC > SRR4302533.3932078/1‑94 (MQ=60)
CAAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCT < SRR4302533.2758626/94‑1 (MQ=60)
AAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTG < SRR4302533.1734571/94‑1 (MQ=60)
AAAT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTG > SRR4302533.2304454/1‑94 (MQ=60)
AT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGA > SRR4302533.223865/1‑94 (MQ=60)
AT‑CG‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGA > SRR4302533.528732/1‑94 (MQ=60)
tcgGGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGAT < SRR4302533.4266433/91‑1 (MQ=60)
tcgGGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGAT < SRR4302533.6154384/91‑1 (MQ=60)
tcgGGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGAT < SRR4302533.2992721/91‑1 (MQ=60)
G‑‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGATGA < SRR4302533.4621912/94‑1 (MQ=60)
GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGATGAA > SRR4302533.2919735/1‑94 (MQ=60)
GGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGATGAAA > SRR4302533.5041398/1‑94 (MQ=60)
GGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGATGAAA > SRR4302533.4903483/1‑94 (MQ=60)
GGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGATGAAAAA < SRR4302533.3675684/94‑1 (MQ=60)
|
TTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGTGTGAAACAGAATGCGAAGACGAACAATAAGGCCTCCCAAAT‑C‑‑GGGGGG‑CCTTTTTTATTGATAACAAAAAGGCAACACTATGACATCGGAAAACCCGTTACTGGCGCTGCGAGAGAAAATCAGCGCGCTGGATGAAAAA > NC_000913/2735640‑2735824
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
