Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,785,180 Δ1 bp coding (413/495 nt) b2655 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,785,1800T.100.0% 1164.7 / NA 250coding (413/495 nt)b2655hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (147/103);  total (147/103)

Only 100 of 253 total aligned reads displayed.

ACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAA  >  NC_000913/2785092‑2785267
                                                                                        |                                                                                       
aCCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGAc                                                                                    >  1:445698/1‑93 (MQ=255)
 ccTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACg                                                                                   >  1:5220363/1‑93 (MQ=255)
 ccTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACg                                                                                   <  1:3027852/93‑1 (MQ=255)
     ccAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGAcc                                                                               >  2:6258805/1‑93 (MQ=255)
        gcagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGa                                                                            <  1:6193076/93‑1 (MQ=255)
         cagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGaa                                                                           <  2:5215401/93‑1 (MQ=255)
         cagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGaa                                                                           <  1:893444/93‑1 (MQ=255)
          agATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGaaa                                                                          <  1:4893860/93‑1 (MQ=255)
          agATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGaaa                                                                          <  1:4814835/93‑1 (MQ=255)
          agATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGaaa                                                                          >  1:227137/1‑93 (MQ=255)
           gATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAc                                                                         >  1:1104575/1‑93 (MQ=255)
            aTCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACt                                                                        >  1:676592/1‑93 (MQ=255)
             tCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTc                                                                       >  1:4532780/1‑93 (MQ=255)
             tCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTc                                                                       >  1:2183148/1‑93 (MQ=255)
             tCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTc                                                                       >  1:201101/1‑93 (MQ=255)
             tCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTc                                                                       >  2:6302662/1‑93 (MQ=255)
             tCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTc                                                                       >  1:277459/1‑93 (MQ=255)
              cAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGAACAGAAACTcc                                                                      >  1:3644437/1‑93 (MQ=255)
               agagAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTccc                                                                     <  2:4375313/93‑1 (MQ=255)
                 agaAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCga                                                                   >  1:2127722/1‑93 (MQ=255)
                  gaAACTATGTCTGAATTTGCACGTTGCCATTCTGGGTATTTACAAATCCCTCCAGTGACCACTTTCCGCG‑CCGACGGACCCGACACTCCCgca                                                                  >  2:3019671/1‑91 (MQ=255)
                  gaAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaa                                                                  >  1:4060673/1‑93 (MQ=255)
                   aaaaTATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaag                                                                 <  1:5285541/93‑1 (MQ=255)
                   aaaaTATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaag                                                                 >  1:843113/1‑93 (MQ=255)
                    aaaTATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaaga                                                                >  1:5376251/1‑93 (MQ=255)
                      atatGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaagaag                                                              >  1:2063686/1‑93 (MQ=255)
                      atatGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaagaag                                                              >  2:3772588/1‑93 (MQ=255)
                       tatGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaagaaga                                                             <  2:3804737/93‑1 (MQ=255)
                        atGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaagaagaa                                                            >  2:6020115/1‑93 (MQ=255)
                         tGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGaaa                                                           <  2:1609179/93‑1 (MQ=255)
                         tGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGaaa                                                           <  2:3280764/93‑1 (MQ=255)
                           tCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAg                                                         >  1:2866456/1‑93 (MQ=255)
                           tCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAg                                                         <  1:2964848/93‑1 (MQ=255)
                            cTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAgg                                                        <  2:3481337/93‑1 (MQ=255)
                            cTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAgg                                                        >  1:4007937/1‑93 (MQ=255)
                            cTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAgg                                                        >  2:3865513/1‑93 (MQ=255)
                            cTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAgg                                                        >  1:4275423/1‑93 (MQ=255)
                            cTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAgg                                                        <  2:4523331/93‑1 (MQ=255)
                            cTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAgg                                                        <  1:2553642/93‑1 (MQ=255)
                             tGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAggg                                                       >  1:5139266/1‑93 (MQ=255)
                             tGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAggg                                                       >  2:488380/1‑93 (MQ=255)
                             tGAATTTGCACGTTGCCATTATGGGTATATACAAACCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAggg                                                       <  2:5104434/93‑1 (MQ=255)
                               aaTTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGtt                                                     <  2:4332849/93‑1 (MQ=255)
                               aaTTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGtt                                                     >  2:1028420/1‑93 (MQ=255)
                               aaTTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGtt                                                     >  1:1512914/1‑93 (MQ=255)
                                aTTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTa                                                    >  2:918510/1‑93 (MQ=255)
                                aTTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTa                                                    >  1:609832/1‑93 (MQ=255)
                                 tttGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTAc                                                   <  1:4749773/93‑1 (MQ=255)
                                 tttGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTAc                                                   >  2:4080153/1‑93 (MQ=255)
                                  ttGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACt                                                  <  2:2835921/93‑1 (MQ=255)
                                    gCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTgg                                                >  1:140385/1‑93 (MQ=255)
                                     cACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGt                                               >  2:6192928/1‑93 (MQ=255)
                                       cGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGttt                                             >  2:818870/1‑93 (MQ=255)
                                       cGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGttt                                             >  2:5760886/1‑93 (MQ=255)
                                        gTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAACTGGATACTGGTTTc                                            >  1:3600829/1‑93 (MQ=255)
                                        gTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTc                                            >  2:1123513/1‑93 (MQ=255)
                                        gTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTc                                            <  2:2028483/93‑1 (MQ=255)
                                          tGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCAt                                          >  1:1865541/1‑93 (MQ=255)
                                           gCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATg                                         >  2:4156995/1‑93 (MQ=255)
                                               ttATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTa                                     <  1:1732970/93‑1 (MQ=255)
                                               ttATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGGTACTGGTTTCATGCTTa                                     >  2:3685265/1‑93 (MQ=255)
                                                tATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTAt                                    >  2:4800133/1‑93 (MQ=255)
                                                 aTGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATc                                   >  1:3090001/1‑93 (MQ=255)
                                                 aTGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATc                                   <  2:5624826/93‑1 (MQ=255)
                                                 aTGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATc                                   <  2:136828/93‑1 (MQ=255)
                                                 aTGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATc                                   <  2:2853181/93‑1 (MQ=255)
                                                  tGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCa                                  >  1:5588955/1‑93 (MQ=255)
                                                   gggTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCaa                                 >  1:4836689/1‑93 (MQ=255)
                                                    ggTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAc                                <  1:2674535/93‑1 (MQ=255)
                                                      tatataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAccc                              >  2:4000500/1‑93 (MQ=255)
                                                        tataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGa                            >  2:680058/1‑93 (MQ=255)
                                                        tataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGa                            >  1:5904917/1‑93 (MQ=255)
                                                         ataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGaa                           >  1:5673199/1‑93 (MQ=255)
                                                         ataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGaa                           >  1:1043867/1‑93 (MQ=255)
                                                         ataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGaa                           <  2:5675676/93‑1 (MQ=255)
                                                          taCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAg                          >  1:235099/1‑93 (MQ=255)
                                                          taCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAg                          >  2:2564173/1‑93 (MQ=255)
                                                          taCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAg                          <  2:2282703/93‑1 (MQ=255)
                                                            cAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGAt                        <  1:3317680/93‑1 (MQ=255)
                                                              aaTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCt                      <  1:1611075/93‑1 (MQ=255)
                                                                tCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCttt                    >  1:4370421/1‑93 (MQ=255)
                                                                  ccTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGt                  <  2:5307364/93‑1 (MQ=255)
                                                                  ccTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGt                  >  1:4954058/1‑93 (MQ=255)
                                                                  ccTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGt                  <  1:1597206/93‑1 (MQ=255)
                                                                   cTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTa                 >  2:817534/1‑93 (MQ=255)
                                                                     ccAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAcc               >  2:1900302/1‑93 (MQ=255)
                                                                       aGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccat             >  2:1787748/1‑93 (MQ=255)
                                                                        gTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatc            >  1:1274418/1‑93 (MQ=255)
                                                                          gACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatcca          <  2:1890902/93‑1 (MQ=255)
                                                                          gACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatcca          >  2:533752/1‑93 (MQ=255)
                                                                           aCAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatccat         >  1:1249655/1‑93 (MQ=255)
                                                                            cAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATa        <  2:1404848/93‑1 (MQ=255)
                                                                            cAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATa        <  2:241352/93‑1 (MQ=255)
                                                                              aCTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAt      <  1:5994181/93‑1 (MQ=255)
                                                                               cTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATc     >  2:4457606/1‑93 (MQ=255)
                                                                                tttCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAACAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCCTCCATAATcc    >  2:3147908/1‑93 (MQ=255)
                                                                                tttCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATcc    <  2:5171144/93‑1 (MQ=255)
                                                                                tttCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATcc    <  1:3259455/93‑1 (MQ=255)
                                                                                 ttCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCa   <  1:314056/93‑1 (MQ=255)
                                                                                  tCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCaa  >  1:1902725/1‑93 (MQ=255)
                                                                                        |                                                                                       
ACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAA  >  NC_000913/2785092‑2785267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAAT  >  NC_000913/2785091‑2785268
                                                                                         |                                                                                        
CACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGAC                                                                                     >  SRR4302533.448364/1‑94 (MQ=60)
 ACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACG                                                                                    >  SRR4302533.5251780/1‑94 (MQ=60)
 ACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACG                                                                                    >  SRR4302533.2055351/1‑94 (MQ=60)
  CCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGG                                                                                   >  SRR4302533.563225/1‑94 (MQ=60)
  CCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGG                                                                                   <  SRR4302533.3046382/94‑1 (MQ=60)
     ACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACC                                                                                >  SRR4302533.112274/1‑94 (MQ=60)
     ACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACC                                                                                >  SRR4302533.5296465/1‑94 (MQ=60)
     ACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAACCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACC                                                                                <  SRR4302533.2574240/94‑1 (MQ=60)
      CCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCA                                                                               <  SRR4302533.3026660/94‑1 (MQ=60)
      CCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCA                                                                               <  SRR4302533.2920593/94‑1 (MQ=60)
         GCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAA                                                                            >  SRR4302533.4836385/1‑94 (MQ=60)
         GCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAA                                                                            >  SRR4302533.546658/1‑94 (MQ=60)
         GCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAA                                                                            <  SRR4302533.6230239/94‑1 (MQ=60)
          CAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAA                                                                           <  SRR4302533.898695/94‑1 (MQ=60)
          CAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAA                                                                           <  SRR4302533.4121182/94‑1 (MQ=60)
          CAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAA                                                                           >  SRR4302533.228549/1‑94 (MQ=60)
          CAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAA                                                                           >  SRR4302533.5774937/1‑94 (MQ=60)
           AGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAC                                                                          <  SRR4302533.4923521/94‑1 (MQ=60)
           AGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAC                                                                          <  SRR4302533.4844019/94‑1 (MQ=60)
           AGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAC                                                                          >  SRR4302533.3140881/1‑94 (MQ=60)
           AGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAC                                                                          >  SRR4302533.3301437/1‑94 (MQ=60)
           AGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAC                                                                          >  SRR4302533.1111118/1‑94 (MQ=60)
           AGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAC                                                                          <  SRR4302533.3978932/94‑1 (MQ=60)
            GATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACT                                                                         >  SRR4302533.680591/1‑94 (MQ=60)
             ATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTCTATACAATTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTC                                                                        >  SRR4302533.3404862/1‑94 (MQ=60)
             ATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTC                                                                        >  SRR4302533.4560225/1‑94 (MQ=60)
             ATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTC                                                                        >  SRR4302533.202380/1‑94 (MQ=60)
             ATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTC                                                                        >  SRR4302533.279153/1‑94 (MQ=60)
             ATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTC                                                                        >  SRR4302533.2196608/1‑94 (MQ=60)
              TCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGAACAGAAACTCC                                                                       >  SRR4302533.3666845/1‑94 (MQ=60)
                AGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCG                                                                     <  SRR4302533.1549651/94‑1 (MQ=60)
                 GAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGA                                                                    >  SRR4302533.6096262/1‑94 (MQ=60)
                 GAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGA                                                                    >  SRR4302533.2140844/1‑94 (MQ=60)
                  AGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAA                                                                   >  SRR4302533.4340653/1‑94 (MQ=60)
                  AGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAA                                                                   >  SRR4302533.4085390/1‑94 (MQ=60)
                   GAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAG                                                                  >  SRR4302533.848044/1‑94 (MQ=60)
                   GAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAG                                                                  <  SRR4302533.1110931/94‑1 (MQ=60)
                    AAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGA                                                                 <  SRR4302533.5317201/94‑1 (MQ=60)
                    AAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGA                                                                 >  SRR4302533.5408562/1‑94 (MQ=60)
                     AAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAA                                                                <  SRR4302533.2359147/94‑1 (MQ=60)
                      AATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAG                                                               >  SRR4302533.2076408/1‑94 (MQ=60)
                      AATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAG                                                               >  SRR4302533.5813840/1‑94 (MQ=60)
                       ATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGA                                                              <  SRR4302533.6034926/94‑1 (MQ=60)
                        TATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CGGACGGACCAGAAACTCCCGAAGAAGAA                                                             >  SRR4302533.233618/1‑94 (MQ=60)
                        TATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAA                                                             >  SRR4302533.4453428/1‑94 (MQ=60)
                          TGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGCAGAAGAAAA                                                           >  SRR4302533.6191232/1‑94 (MQ=60)
                          TGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAA                                                           <  SRR4302533.889683/94‑1 (MQ=60)
                           GTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAG                                                          <  SRR4302533.4492650/94‑1 (MQ=60)
                           GTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAG                                                          >  SRR4302533.2884092/1‑94 (MQ=60)
                            TCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGG                                                         <  SRR4302533.2982970/94‑1 (MQ=60)
                            TCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGG                                                         >  SRR4302533.2209193/1‑94 (MQ=60)
                            TCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGG                                                         >  SRR4302533.4301141/1‑94 (MQ=60)
                            TCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGG                                                         >  SRR4302533.4032342/1‑94 (MQ=60)
                            TCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGG                                                         <  SRR4302533.2773245/94‑1 (MQ=60)
                            TCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGG                                                         >  SRR4302533.2055898/1‑94 (MQ=60)
                             CTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGG                                                        <  SRR4302533.2569354/94‑1 (MQ=60)
                             CTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGG                                                        >  SRR4302533.5170326/1‑94 (MQ=60)
                              TGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGT                                                       <  SRR4302533.1930739/94‑1 (MQ=60)
                               GAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTT                                                      >  SRR4302533.1522028/1‑94 (MQ=60)
                                AATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTA                                                     >  SRR4302533.2808104/1‑94 (MQ=60)
                                AATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTA                                                     >  SRR4302533.613418/1‑94 (MQ=60)
                                AATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTA                                                     >  SRR4302533.4396958/1‑94 (MQ=60)
                                AATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTA                                                     <  SRR4302533.4732576/94‑1 (MQ=60)
                                AATTTGCACGTTGCCATTATGGGTATATACAAACCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTA                                                     <  SRR4302533.1613958/94‑1 (MQ=60)
                                 ATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTAC                                                    <  SRR4302533.2387431/94‑1 (MQ=60)
                                 ATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTAC                                                    <  SRR4302533.3670855/94‑1 (MQ=60)
                                  TTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACT                                                   >  SRR4302533.5995478/1‑94 (MQ=60)
                                  TTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACT                                                   <  SRR4302533.4778571/94‑1 (MQ=60)
                                  TTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACT                                                   >  SRR4302533.1298459/1‑94 (MQ=60)
                                    TGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGG                                                 >  SRR4302533.141279/1‑94 (MQ=60)
                                       ACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTT                                              >  SRR4302533.1418499/1‑94 (MQ=60)
                                        CGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAACTGGATACTGGTTTC                                             >  SRR4302533.3622984/1‑94 (MQ=60)
                                        CGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTC                                             >  SRR4302533.4978672/1‑94 (MQ=60)
                                        CGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTC                                             >  SRR4302533.5349032/1‑94 (MQ=60)
                                        CGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTC                                             >  SRR4302533.655012/1‑94 (MQ=60)
                                          TTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCAT                                           <  SRR4302533.1204105/94‑1 (MQ=60)
                                          TTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCAT                                           >  SRR4302533.1876919/1‑94 (MQ=60)
                                           TGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATG                                          >  SRR4302533.3223712/1‑94 (MQ=60)
                                             CCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCT                                        <  SRR4302533.5154418/94‑1 (MQ=60)
                                               ATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTA                                      >  SRR4302533.980472/1‑94 (MQ=60)
                                               ATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTA                                      >  SRR4302533.735640/1‑94 (MQ=60)
                                               ATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTA                                      >  SRR4302533.4074250/1‑94 (MQ=60)
                                                TTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTAT                                     <  SRR4302533.1743476/94‑1 (MQ=60)
                                                TTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTAT                                     >  SRR4302533.5589534/1‑94 (MQ=60)
                                                TTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTAT                                     <  SRR4302533.2925480/94‑1 (MQ=60)
                                                 TATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATC                                    <  SRR4302533.647186/94‑1 (MQ=60)
                                                 TATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATC                                    >  SRR4302533.3108998/1‑94 (MQ=60)
                                                 TATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATC                                    <  SRR4302533.5191128/94‑1 (MQ=60)
                                                  ATGTGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCA                                   <  SRR4302533.3367444/94‑1 (MQ=60)
                                                  ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCA                                   <  SRR4302533.1814013/94‑1 (MQ=60)
                                                  ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCA                                   >  SRR4302533.5622721/1‑94 (MQ=60)
                                                  ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCA                                   <  SRR4302533.1882640/94‑1 (MQ=60)
                                                   TGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAA                                  >  SRR4302533.4892206/1‑94 (MQ=60)
                                                   TGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAA                                  >  SRR4302533.4866005/1‑94 (MQ=60)
                                                   TGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAA                                  >  SRR4302533.4866006/1‑94 (MQ=60)
                                                    GGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAC                                 >  SRR4302533.2150441/1‑94 (MQ=60)
                                                    GGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAC                                 >  SRR4302533.2735341/1‑94 (MQ=60)
                                                     GGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACC                                <  SRR4302533.2690938/94‑1 (MQ=60)
                                                      GTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCC                               >  SRR4302533.163409/1‑94 (MQ=60)
                                                      GTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCC                               >  SRR4302533.50390/1‑94 (MQ=60)
                                                       TATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCG                              <  SRR4302533.4816021/94‑1 (MQ=60)
                                                        ATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGA                             >  SRR4302533.5940579/1‑94 (MQ=60)
                                                        ATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGA                             >  SRR4302533.5304514/1‑94 (MQ=60)
                                                         TATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAA                            >  SRR4302533.1050003/1‑94 (MQ=60)
                                                         TATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAA                            >  SRR4302533.5707461/1‑94 (MQ=60)
                                                          ATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAG                           >  SRR4302533.236548/1‑94 (MQ=60)
                                                          ATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAG                           <  SRR4302533.2181805/94‑1 (MQ=60)
                                                            ACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGAT                         <  SRR4302533.1885268/94‑1 (MQ=60)
                                                             CAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATC                        <  SRR4302533.3338172/94‑1 (MQ=60)
                                                              AAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCT                       <  SRR4302533.3271164/94‑1 (MQ=60)
                                                               AATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTT                      <  SRR4302533.365255/94‑1 (MQ=60)
                                                               AATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTT                      <  SRR4302533.1620845/94‑1 (MQ=60)
                                                                ATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTT                     >  SRR4302533.4396805/1‑94 (MQ=60)
                                                                ATCCCTCCAGTGACAACTTTCCGCG‑ACGACGGACCAGAAGCTCCCGAAGAAGAAAAGGGTTACGGGTTTCATGCTTATCAACCCGAAGATCTTT                     <  SRR4302533.737880/94‑1 (MQ=60)
                                                                 TCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTG                    >  SRR4302533.2091455/1‑94 (MQ=60)
                                                                 TCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTG                    >  SRR4302533.4095594/1‑94 (MQ=60)
                                                                  CCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGT                   >  SRR4302533.4984068/1‑94 (MQ=60)
                                                                   CCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTA                  >  SRR4302533.1657905/1‑94 (MQ=60)
                                                                   CCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTA                  <  SRR4302533.2502761/94‑1 (MQ=60)
                                                                   CCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTA                  <  SRR4302533.1606878/94‑1 (MQ=60)
                                                                    CTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAC                 <  SRR4302533.1343330/94‑1 (MQ=60)
                                                                       CAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCAT              >  SRR4302533.932516/1‑94 (MQ=60)
                                                                        AGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATC             >  SRR4302533.1280179/1‑94 (MQ=60)
                                                                        AGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATC             >  SRR4302533.1282079/1‑94 (MQ=60)
                                                                        AGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATC             >  SRR4302533.4860219/1‑94 (MQ=60)
                                                                           GACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCAT          >  SRR4302533.1257118/1‑94 (MQ=60)
                                                                              AACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAT       <  SRR4302533.3057200/94‑1 (MQ=60)
                                                                              AACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAT       <  SRR4302533.4545991/94‑1 (MQ=60)
                                                                              AACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTCCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAT       >  SRR4302533.1534338/1‑94 (MQ=60)
                                                                               ACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATC      <  SRR4302533.6030485/94‑1 (MQ=60)
                                                                                CTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCA     >  SRR4302533.3053716/1‑94 (MQ=60)
                                                                                 TTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCA    <  SRR4302533.3279561/94‑1 (MQ=60)
                                                                                  TTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAA   <  SRR4302533.315974/94‑1 (MQ=60)
                                                                                  TTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAA   >  SRR4302533.1914338/1‑94 (MQ=60)
                                                                                   TCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAAT  >  SRR4302533.6287746/1‑94 (MQ=60)
                                                                                   TCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAAT  >  SRR4302533.4623696/1‑94 (MQ=60)
                                                                                         |                                                                                        
CACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAAT  >  NC_000913/2785091‑2785268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑