Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,790,474 T→C L394P (CTG→CCG)  gabD → succinate‑semialdehyde dehydrogenase, NADP‑dependent activity

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,790,4740TC100.0% 608.3 / NA 190L394P (CTG→CCG) gabDsuccinate‑semialdehyde dehydrogenase, NADP‑dependent activity
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (119/71);  total (119/71)

Only 100 of 209 total aligned reads displayed.

GCGGCAACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCTGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAA  >  NC_000913/2790384‑2790563
                                                                                          |                                                                                         
gcggcAACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGt                                                                                         >  1:4195824/1‑93 (MQ=255)
gcggcAACTTCTTCCAGCCGACCATTCTGGCGGACGTTCCGGACAACGCCACAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGt                                                                                         >  2:946182/1‑93 (MQ=255)
  ggcAACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTc                                                                                       >  1:3927301/1‑93 (MQ=255)
  ggcAACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTc                                                                                       >  1:3399971/1‑93 (MQ=255)
     aaCTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCCAAGTGTCGAAAGAAGAGACGTTCGGCGCCCTCGCCCCCCCGTTCCGc                                                                                    >  2:1245946/1‑93 (MQ=255)
     aaCTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGc                                                                                    >  2:4888998/1‑93 (MQ=255)
      aCTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCt                                                                                   >  1:3505690/1‑93 (MQ=255)
       cttcttCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCtt                                                                                  >  1:1377987/1‑93 (MQ=255)
        ttcttcCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCttt                                                                                 >  2:2073083/1‑93 (MQ=255)
        ttcttcCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGCTCCGCttt                                                                                 >  1:2420273/1‑93 (MQ=255)
         tcttcCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTa                                                                                <  1:1258738/93‑1 (MQ=255)
          cttcCGCCCGACCATTCGGGTGGACGTTCCGGCAACCGCAAAAGTGTCAAAAGAAGAGACGTTCGGCCCCCTCACCCCGCCGTTCCGCTTTaa                                                                               <  2:6121457/93‑1 (MQ=255)
            tcCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAg                                                                             >  2:5024618/1‑93 (MQ=255)
            tcCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAg                                                                             >  1:2224124/1‑93 (MQ=255)
               aGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATg                                                                          <  1:1035758/93‑1 (MQ=255)
               aGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATg                                                                          <  1:5624885/93‑1 (MQ=255)
                gCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGa                                                                         >  2:1732717/1‑93 (MQ=255)
                gCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGa                                                                         <  2:2665442/93‑1 (MQ=255)
                 ccGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGaa                                                                        <  2:2251154/93‑1 (MQ=255)
                 ccGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTCCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGaa                                                                        <  2:4515358/93‑1 (MQ=255)
                  cGACTATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTCCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAg                                                                       <  2:4409375/93‑1 (MQ=255)
                  cGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAg                                                                       >  1:1853142/1‑93 (MQ=255)
                   gACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGc                                                                      <  1:6098768/93‑1 (MQ=255)
                   gACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGc                                                                      >  2:5808215/1‑93 (MQ=255)
                    aCCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCt                                                                     <  1:5853495/93‑1 (MQ=255)
                      cATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGa                                                                   >  2:3386254/1‑93 (MQ=255)
                      cATTCTGGGGGACGTTCCGGCCACCGCCAAAGTGTCAAAAGAAGAGGCGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGa                                                                   <  2:1060979/93‑1 (MQ=255)
                        ttCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGAtg                                                                 >  1:3407246/1‑93 (MQ=255)
                        ttCTGGTGGACGTTCCGCCCAACGCCAAAGTGCCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGAtg                                                                 <  1:5947163/93‑1 (MQ=255)
                          cTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGAtgtg                                                               >  2:2379904/1‑93 (MQ=255)
                           tggtggACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGa                                                              >  2:1041125/1‑93 (MQ=255)
                           tggtggACGTTCCGGCCAACGCCAAAGTGTCAAAAGAAGAGACGTTCGGCCCCCTCCCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGa                                                              <  2:3344456/93‑1 (MQ=255)
                             gtggACGTTCCGGCCAACGCCAAAGTTTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGAtt                                                            <  1:4348559/93‑1 (MQ=255)
                             gtggACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGAtt                                                            <  1:633609/93‑1 (MQ=255)
                             gtggACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGAtt                                                            >  2:6266001/1‑93 (MQ=255)
                             gtggACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGGGAtt                                                            >  2:5689235/1‑93 (MQ=255)
                              tggACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTg                                                           <  2:2771601/93‑1 (MQ=255)
                               ggACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGCCGTTCGACCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTgc                                                          <  1:1327380/93‑1 (MQ=255)
                               ggACGTTCCGCCCAACGCCAAGGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTgc                                                          <  1:2800002/93‑1 (MQ=255)
                                gACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTgcg                                                         <  1:4444812/93‑1 (MQ=255)
                                gACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTgcg                                                         >  1:4815054/1‑93 (MQ=255)
                                gACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTgcg                                                         >  2:3029429/1‑93 (MQ=255)
                                  cGTCCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCa                                                       <  2:5300896/93‑1 (MQ=255)
                                    ttCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAg                                                     >  1:1895747/1‑93 (MQ=255)
                                    ttCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAg                                                     >  2:3520545/1‑93 (MQ=255)
                                    tcccGCCCACCGCCAAAGTGTCAAAAGAAGAGACGTGCGGCCCCCGCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAg                                                     <  2:3123841/91‑1 (MQ=255)
                                     tCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGc                                                    <  1:2263211/93‑1 (MQ=255)
                                      cggcccAACCCAAAAGTGTCGAAAGAAGGGACGTTGGGCCCCCCCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGcc                                                   <  1:4153318/89‑1 (MQ=255)
                                        gcggaaCGCAAAAGTGGTTAAAAAGGATGCGTTCGGCCCCCGCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCaa                                                 <  1:4015504/89‑1 (MQ=255)
                                        gcccACCGCCAAAGTGTCGAAAGAAGAGCCGTTCGCCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCaa                                                 <  1:2849503/91‑1 (MQ=255)
                                         gcaaaCGCCAAAGGGTCAAAAGAAGAGCCGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAAt                                                <  2:5501312/90‑1 (MQ=255)
                                          ccAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATg                                               >  1:5163526/1‑93 (MQ=255)
                                          ccAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCCTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATg                                               >  1:204579/1‑93 (MQ=255)
                                              cGCAAAAGTGTCAAAAGAAGAGACGTTCGCCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGacac                                           <  2:5155598/93‑1 (MQ=255)
                                                ccAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCg                                         >  1:100821/1‑93 (MQ=255)
                                                 cAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGa                                        >  1:5515538/1‑93 (MQ=255)
                                                 cAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGa                                        >  2:1378041/1‑93 (MQ=255)
                                                  aaaGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAg                                       >  2:3801168/1‑93 (MQ=255)
                                                   aaGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGt                                      >  2:2432358/1‑93 (MQ=255)
                                                    aGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGtt                                     <  1:5371648/93‑1 (MQ=255)
                                                    aGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGtt                                     <  1:357072/93‑1 (MQ=255)
                                                    aGTGTCAAAAGAAGAGCTGTCCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGtt                                     <  1:2981514/93‑1 (MQ=255)
                                                    aGTGTCAAAAGAAGAGACGTCCGGCCCCCCCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGtt                                     <  2:4806061/93‑1 (MQ=255)
                                                        tCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGc                                 >  2:5353109/1‑93 (MQ=255)
                                                         cGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGcc                                >  2:1438193/1‑93 (MQ=255)
                                                          gAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCt                               >  2:3900913/1‑93 (MQ=255)
                                                           aaaGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCtt                              >  2:4725396/1‑93 (MQ=255)
                                                             agaagaGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTgc                            >  2:4249628/1‑93 (MQ=255)
                                                              gaagaGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTgcc                           >  2:37284/1‑93 (MQ=255)
                                                              gaagaGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTgcc                           >  1:1520453/1‑93 (MQ=255)
                                                               aagaGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTgccg                          >  1:2724318/1‑93 (MQ=255)
                                                                agagACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTgccgc                         >  2:4564576/1‑93 (MQ=255)
                                                                 gagaCGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTgccgcc                        >  2:542455/1‑93 (MQ=255)
                                                                   gaCGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTa                      >  1:1872987/1‑93 (MQ=255)
                                                                    aCGTTCGCCCCCTCCCCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTAt                     <  2:5716079/93‑1 (MQ=255)
                                                                     cGTCCGCCCCCCCCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTAtt                    <  2:4168375/93‑1 (MQ=255)
                                                                       ttCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTc                  >  1:4976529/1‑93 (MQ=255)
                                                                         cGGCCCCCCCTCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTa                <  1:5292809/93‑1 (MQ=255)
                                                                          ggCCCCCTCGCCCCGCCGTTCCGCTTTAAGGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTAc               <  1:834026/93‑1 (MQ=255)
                                                                          gcccccccCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTAc               <  2:2707437/91‑1 (MQ=255)
                                                                           gCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACg              >  2:813315/1‑93 (MQ=255)
                                                                           gCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACg              >  2:2552886/1‑93 (MQ=255)
                                                                             ccccTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGcc            >  2:1131500/1‑93 (MQ=255)
                                                                              cccTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGccc           >  2:1410789/1‑93 (MQ=255)
                                                                              cccTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGccc           >  2:1202019/1‑93 (MQ=255)
                                                                              cccTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGccc           >  1:2685799/1‑93 (MQ=255)
                                                                               ccTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCg          >  1:2914856/1‑93 (MQ=255)
                                                                               ccTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCg          >  1:553419/1‑93 (MQ=255)
                                                                                cccGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTGTACGCCCGt         <  2:1066592/91‑1 (MQ=255)
                                                                                cTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGt         >  1:3184689/1‑93 (MQ=255)
                                                                                 tCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTg        >  2:4308150/1‑93 (MQ=255)
                                                                                   gCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGAt      >  2:5226288/1‑93 (MQ=255)
                                                                                   cccccGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATGGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGAt      <  1:3094761/92‑1 (MQ=255)
                                                                                    ccccGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGAtt     >  1:1427228/1‑93 (MQ=255)
                                                                                    ccccGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGAtt     <  1:2659038/93‑1 (MQ=255)
                                                                                    ccccGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGAtt     >  1:6217697/1‑93 (MQ=255)
                                                                                      ccgccgTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCAGCCTATTTCTACGCCCTGGATTTa   >  2:4235857/1‑93 (MQ=255)
                                                                                      ccGCGGTTCCGCTTAAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTa   <  1:4039492/93‑1 (MQ=255)
                                                                                       cGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTaa  >  2:5622473/1‑93 (MQ=255)
                                                                                       cGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTaa  >  1:565624/1‑93 (MQ=255)
                                                                                          |                                                                                         
GCGGCAACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCTGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAA  >  NC_000913/2790384‑2790563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGCGGCAACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCTGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAAGCCG  >  NC_000913/2790383‑2790567
                                                                                           |                                                                                             
GGCGGCAACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGT                                                                                             >  SRR4302533.4221221/1‑94 (MQ=60)
 GCGGCAACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTT                                                                                            <  SRR4302533.5255341/94‑1 (MQ=60)
 GCGGCAACTTCTCCCAGCCGACCATTCTGGTGGACGTCCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTT                                                                                            <  SRR4302533.1482023/94‑1 (MQ=60)
  GGGCAACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTC                                                                                           <  SRR4302533.1874929/94‑1 (MQ=60)
  CGGCAACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTC                                                                                           >  SRR4302533.1018952/1‑94 (MQ=60)
  CGGCAACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTC                                                                                           >  SRR4302533.3420964/1‑94 (MQ=60)
  CGGCAACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTC                                                                                           >  SRR4302533.3951276/1‑94 (MQ=60)
    GCAACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCG                                                                                         <  SRR4302533.5028501/94‑1 (MQ=60)
      AACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCT                                                                                       >  SRR4302533.4048042/1‑94 (MQ=60)
      AACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCT                                                                                       >  SRR4302533.3527299/1‑94 (MQ=60)
       ACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTT                                                                                      >  SRR4302533.1386275/1‑94 (MQ=60)
        CTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTT                                                                                     >  SRR4302533.67283/1‑94 (MQ=60)
        CTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGCTCCGCTTT                                                                                     >  SRR4302533.2435220/1‑94 (MQ=60)
          TCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAA                                                                                   <  SRR4302533.1266266/94‑1 (MQ=60)
            tacgagcgGACCATTCTGGTGGACTTTCCGGCCAACGCCAAAGTGTCAAAAGAAGAGACGTTCGCCCCCCTCGCCCCGCCGTTCCGCTTTAAAG                                                                                 <  SRR4302533.5751585/86‑1 (MQ=60)
            TTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAG                                                                                 >  SRR4302533.2237858/1‑94 (MQ=60)
            TTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAG                                                                                 >  SRR4302533.3428105/1‑94 (MQ=60)
               CAGCGGACCATTCTGTTGGACTTGCCGCCCAACGCCAAAGAGTCGAAAGAAGAGACGTTCGCCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATG                                                                              <  SRR4302533.3134083/94‑1 (MQ=60)
               CAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATG                                                                              <  SRR4302533.1049655/94‑1 (MQ=60)
                AGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCGCCCTCGCCCCGCCGTTCCGCTTTAAAGATGA                                                                             >  SRR4302533.4485632/1‑94 (MQ=60)
                AGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGA                                                                             <  SRR4302533.1041847/94‑1 (MQ=60)
                AGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGA                                                                             <  SRR4302533.5658882/94‑1 (MQ=60)
                  CCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAG                                                                           >  SRR4302533.3307171/1‑94 (MQ=60)
                  CCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAG                                                                           >  SRR4302533.1864440/1‑94 (MQ=60)
                  CCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAG                                                                           >  SRR4302533.634488/1‑94 (MQ=60)
                   CGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGC                                                                          <  SRR4302533.4405849/94‑1 (MQ=60)
                    GACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCT                                                                         <  SRR4302533.6135598/94‑1 (MQ=60)
                     ACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTG                                                                        <  SRR4302533.5888884/94‑1 (MQ=60)
                      CCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGA                                                                       >  SRR4302533.5580995/1‑94 (MQ=60)
                      CCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGA                                                                       >  SRR4302533.5819575/1‑94 (MQ=60)
                        ATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATG                                                                     >  SRR4302533.3428291/1‑94 (MQ=60)
                        ATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATG                                                                     >  SRR4302533.1970338/1‑94 (MQ=60)
                         TTCTGGTGGACGTTCCGGCCACCCCCAAAGTGTGGATAGAAGAGACGTTCGCCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGT                                                                    <  SRR4302533.5221139/94‑1 (MQ=60)
                         TTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGT                                                                    <  SRR4302533.3972260/94‑1 (MQ=60)
                         TTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGT                                                                    <  SRR4302533.2692934/94‑1 (MQ=60)
                         TTCTGGTGGACGTTCCGCCCAACGCCAAAGTGCCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGT                                                                    <  SRR4302533.5983134/94‑1 (MQ=60)
                           CTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGA                                                                  >  SRR4302533.324633/1‑94 (MQ=60)
                            TGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGAT                                                                 <  SRR4302533.871163/94‑1 (MQ=60)
                            TGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGAT                                                                 <  SRR4302533.4738219/94‑1 (MQ=60)
                              GTGGACGTTCCGGCCAACGCCAAAGTTTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTG                                                               <  SRR4302533.4374775/94‑1 (MQ=60)
                              GTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTG                                                               <  SRR4302533.637337/94‑1 (MQ=60)
                                GGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGCCGTTCGACCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCG                                                             <  SRR4302533.1335347/94‑1 (MQ=60)
                                GGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCG                                                             >  SRR4302533.4844239/1‑94 (MQ=60)
                                GGACGTTCCGCCCAACGCCAAGGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCG                                                             <  SRR4302533.2817223/94‑1 (MQ=60)
                                 GACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGC                                                            <  SRR4302533.4471696/94‑1 (MQ=60)
                                   CGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAA                                                          >  SRR4302533.1311965/1‑94 (MQ=60)
                                    GTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAG                                                         >  SRR4302533.1907318/1‑94 (MQ=60)
                                    GTCCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAG                                                         <  SRR4302533.2256000/94‑1 (MQ=60)
                                      TCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCC                                                       <  SRR4302533.2277214/94‑1 (MQ=60)
                                      TCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCC                                                       >  SRR4302533.5669101/1‑94 (MQ=60)
                                      TCCGCCCAACGCAAAAGTGTCGAAAGAAGAGCCGTTCGCCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCC                                                       <  SRR4302533.3588833/94‑1 (MQ=60)
                                       cggcccaacccaAAAGTGTCGAAAGAAGGGACGTTGGGCCCCCCCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCA                                                      <  SRR4302533.4178484/82‑1 (MQ=60)
                                         gcggaacgcaaaagtggttaaaaaggatgCGTTCGGCCCCCGCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAAT                                                    <  SRR4302533.4039954/65‑1 (MQ=60)
                                         GGCCAACGCCAAAGTGTCGAAAGAAGAGAGGTTGGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAAT                                                    <  SRR4302533.2821538/94‑1 (MQ=60)
                                         GCCCACCGCCAAAGTGTCGAAAGAAGAGCCGTTCGCCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAAT                                                    <  SRR4302533.2867036/94‑1 (MQ=60)
                                          GCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATG                                                   >  SRR4302533.5194704/1‑94 (MQ=60)
                                          GCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCCTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATG                                                   >  SRR4302533.205881/1‑94 (MQ=60)
                                            CAACGCAAAAGTGTCAAAAGAAGAGCCGTCCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGAC                                                 <  SRR4302533.3608529/94‑1 (MQ=60)
                                            CAACGCAAAAGTGGCGAAAGAAGAGACGTGCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGAC                                                 <  SRR4302533.4085773/94‑1 (MQ=60)
                                               CGCCAAAGTGTCAAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACC                                              <  SRR4302533.6121824/94‑1 (MQ=60)
                                                GCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCG                                             >  SRR4302533.101448/1‑94 (MQ=60)
                                                 CCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGA                                            >  SRR4302533.5548835/1‑94 (MQ=60)
                                                   AAGGTGTAGAAAGAAGAGACGTCCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGT                                          <  SRR4302533.5345582/94‑1 (MQ=60)
                                                   AAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGT                                          >  SRR4302533.2739038/1‑94 (MQ=60)
                                                    AAGTGTCAAAAGAAGAGACGTTCGGCCCCCGCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTT                                         <  SRR4302533.6041564/94‑1 (MQ=60)
                                                     AGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTT                                        <  SRR4302533.5403922/94‑1 (MQ=60)
                                                     AGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTT                                        <  SRR4302533.359247/94‑1 (MQ=60)
                                                     AGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTT                                        >  SRR4302533.5497262/1‑94 (MQ=60)
                                                     AGTGTCAAAAGAAGAGCTGTCCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTT                                        <  SRR4302533.2999751/94‑1 (MQ=60)
                                                       tgtgaAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGG                                      <  SRR4302533.1374770/89‑1 (MQ=60)
                                                         TCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCC                                    >  SRR4302533.1421405/1‑94 (MQ=60)
                                                          CGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCT                                   >  SRR4302533.1381473/1‑94 (MQ=60)
                                                          CGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCT                                   >  SRR4302533.2253150/1‑94 (MQ=60)
                                                          AGAAAGAAGAGACGTCCGGCCCCCTCACCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCT                                   <  SRR4302533.2101593/94‑1 (MQ=60)
                                                             AAGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGC                                <  SRR4302533.2349162/94‑1 (MQ=60)
                                                              AGAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCC                               >  SRR4302533.1529607/1‑94 (MQ=60)
                                                               GAAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCG                              >  SRR4302533.2741034/1‑94 (MQ=60)
                                                                AAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGCTTGCGCAAGCGAATGACACCGAGTTTGGatacagcag                             >  SRR4302533.5902508/1‑85 (MQ=60)
                                                                AAGAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGC                             >  SRR4302533.3106473/1‑94 (MQ=60)
                                                                  GAGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCT                           >  SRR4302533.1689559/1‑94 (MQ=60)
                                                                   AGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTA                          >  SRR4302533.1884404/1‑94 (MQ=60)
                                                                   AGACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTA                          >  SRR4302533.2878692/1‑94 (MQ=60)
                                                                     acttgctcccccccccCCCCGGTGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATT                        <  SRR4302533.1370005/78‑1 (MQ=60)
                                                                     ACGTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATT                        >  SRR4302533.5892081/1‑94 (MQ=60)
                                                                       GTTCGGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTC                      >  SRR4302533.5006705/1‑94 (MQ=60)
                                                                       GTCCGCCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTC                      <  SRR4302533.1769874/94‑1 (MQ=60)
                                                                          CGGCCCCCCCTCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTAC                   <  SRR4302533.5324494/94‑1 (MQ=60)
                                                                          CGCCCCCCTCCCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTAC                   <  SRR4302533.2665349/94‑1 (MQ=60)
                                                                           GGCCCCCTCGCCCCGCCGTTCCGCTTTAAGGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACG                  <  SRR4302533.838913/94‑1 (MQ=60)
                                                                           GGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACG                  >  SRR4302533.4898737/1‑94 (MQ=60)
                                                                           GGCCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACG                  >  SRR4302533.4208237/1‑94 (MQ=60)
                                                                             CCCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCC                >  SRR4302533.5552273/1‑94 (MQ=60)
                                                                              CCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCC               >  SRR4302533.3168815/1‑94 (MQ=60)
                                                                              CCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCC               >  SRR4302533.2702258/1‑94 (MQ=60)
                                                                              CCCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCC               >  SRR4302533.2766974/1‑94 (MQ=60)
                                                                              CCCCTCCCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCC               <  SRR4302533.6240669/94‑1 (MQ=60)
                                                                               CCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCG              >  SRR4302533.4345955/1‑94 (MQ=60)
                                                                               CCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCG              >  SRR4302533.2932735/1‑94 (MQ=60)
                                                                               CCCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCG              >  SRR4302533.556700/1‑94 (MQ=60)
                                                                                CCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGT             >  SRR4302533.3204277/1‑94 (MQ=60)
                                                                                CCTCGCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGG             >  SRR4302533.2986018/1‑94 (MQ=60)
                                                                                    GCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATT         >  SRR4302533.3461374/1‑94 (MQ=60)
                                                                                    GCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATT         >  SRR4302533.6254980/1‑94 (MQ=60)
                                                                                    GCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATT         >  SRR4302533.1435853/1‑94 (MQ=60)
                                                                                    CCCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATGGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATT         <  SRR4302533.3113786/94‑1 (MQ=60)
                                                                                     CCCCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTT        <  SRR4302533.2675370/94‑1 (MQ=60)
                                                                                      CCCGCAGTTCCGCTTTAAATATGAAGCTGATGTGATGGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTA       <  SRR4302533.2864225/94‑1 (MQ=60)
                                                                                       CCGCGGTTCCGCTTAAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAA      <  SRR4302533.4064072/94‑1 (MQ=60)
                                                                                       CCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAA      >  SRR4302533.568976/1‑94 (MQ=60)
                                                                                       CCGCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAA      >  SRR4302533.1886894/1‑94 (MQ=60)
                                                                                         GCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAAGC    >  SRR4302533.1407387/1‑94 (MQ=60)
                                                                                         GCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAAGC    >  SRR4302533.2270422/1‑94 (MQ=60)
                                                                                         GCCGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAAGC    >  SRR4302533.3659260/1‑94 (MQ=60)
                                                                                           CGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAAGCCG  >  SRR4302533.3781824/1‑94 (MQ=60)
                                                                                           CGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAAGCCG  <  SRR4302533.829534/94‑1 (MQ=60)
                                                                                           CGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAAGCCG  >  SRR4302533.107415/1‑94 (MQ=60)
                                                                                           CGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAAGCCG  >  SRR4302533.2196253/1‑94 (MQ=60)
                                                                                           CGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAAGCCG  <  SRR4302533.1347194/94‑1 (MQ=60)
                                                                                           |                                                                                             
GGCGGCAACTTCTTCCAGCCGACCATTCTGGTGGACGTTCCGGCCAACGCCAAAGTGTCGAAAGAAGAGACGTTCGGCCCCCTCGCCCCGCTGTTCCGCTTTAAAGATGAAGCTGATGTGATTGCGCAAGCCAATGACACCGAGTTTGGCCTTGCCGCCTATTTCTACGCCCGTGATTTAAGCCG  >  NC_000913/2790383‑2790567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑