Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,798,359	A→G	T65A (ACT→GCT)	b2672 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,798,359	0	A	G	99.6%	728.2 / NA	231	T65A (ACT→GCT)	b2672	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (105/125); minor base C (0/1); total (105/126)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 238 total aligned reads displayed.

TGGGGCAGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTACTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGCAGCT  >  NC_000913/2798269‑2798448

    gCAGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTcgcg                                                                                     >  2:6265645/1‑93 (MQ=255)

      aGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTc                                                                                   >  1:1692390/1‑93 (MQ=255)

      aGCGACGCAAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTc                                                                                   <  2:4482147/93‑1 (MQ=255)

       gCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTcc                                                                                  >  1:2826799/1‑93 (MQ=255)

          aCGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGc                                                                               >  1:2503852/1‑93 (MQ=255)

           cGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCa                                                                              <  1:4881340/93‑1 (MQ=255)

             ccAAAGGGGAAGCTGAAGGCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAg                                                                            >  1:223021/1‑93 (MQ=255)

             ccAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAg                                                                            <  2:6033087/93‑1 (MQ=255)

             ccAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAg                                                                            <  2:3441308/93‑1 (MQ=255)

               aaaGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGcc                                                                          <  2:4960728/93‑1 (MQ=255)

               aaaGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGcc                                                                          >  1:5253851/1‑93 (MQ=255)

               aaaGGGAAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAACCCAGGGCGCGAATGCATGGTCGTCCTCGCGTCCAGCAAGcc                                                                          <  2:4808225/93‑1 (MQ=255)

                aaGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCcg                                                                         >  2:2614479/1‑93 (MQ=255)

                 aGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCcgc                                                                        <  1:1228567/93‑1 (MQ=255)

                   gggAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCcgcgc                                                                      <  1:2002951/93‑1 (MQ=255)

                    ggAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCcgcgcg                                                                     >  2:2811668/1‑93 (MQ=255)

                    ggAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCcgcgcg                                                                     <  2:4037646/93‑1 (MQ=255)

                     gAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGGGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCcgcgcgg                                                                    >  1:917329/1‑92 (MQ=255)

                       aGCTGAAGCCGGACGCAGTAAAGCTCAGGAATTGCTGAAAGAAACCAGGGCGCGAATCCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGa                                                                  <  2:5531316/93‑1 (MQ=255)

                       aGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGa                                                                  <  1:2696637/93‑1 (MQ=255)

                       aGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGa                                                                  <  2:5283705/93‑1 (MQ=255)

                       aGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGa                                                                  <  1:3464904/93‑1 (MQ=255)

                         cTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATg                                                                >  1:5473214/1‑93 (MQ=255)

                          tGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGc                                                               >  1:5563911/1‑93 (MQ=255)

                           gAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGcc                                                              >  1:1507323/1‑93 (MQ=255)

                            aaGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCg                                                             >  1:5045715/1‑93 (MQ=255)

                              gCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCAAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGtt                                                           <  2:5072467/93‑1 (MQ=255)

                                cgcacgcaGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTgg                                                         <  2:186382/93‑1 (MQ=255)

                                cgcacgcaGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTgg                                                         <  2:1587606/93‑1 (MQ=255)

                                 gcacgcaGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGc                                                        <  2:3002788/93‑1 (MQ=255)

                                 gcacgcaGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGc                                                        >  1:2172003/1‑93 (MQ=255)

                                    cgcaGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTgc                                                     <  2:1498647/93‑1 (MQ=255)

                                    cgcaGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTgc                                                     <  1:6100375/93‑1 (MQ=255)

                                    cgcaGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTgc                                                     >  1:5314975/1‑93 (MQ=255)

                                     gcaGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTgcg                                                    <  2:3409281/93‑1 (MQ=255)

                                     gcaGTAAAGCTCAGGCATGGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTgcg                                                    <  1:1128806/93‑1 (MQ=255)

                                         tAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGa                                                <  1:442456/93‑1 (MQ=255)

                                             gCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCt                                            >  2:858427/1‑93 (MQ=255)

                                               tCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCttt                                          <  1:4618196/93‑1 (MQ=255)

                                               tCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCttt                                          <  1:1053656/93‑1 (MQ=255)

                                               tCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCttt                                          <  1:240361/93‑1 (MQ=255)

                                               tCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCttt                                          >  1:3355574/1‑93 (MQ=255)

                                                cAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCtttt                                         <  2:4386908/93‑1 (MQ=255)

                                                cAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCtttt                                         >  2:2832677/1‑93 (MQ=255)

                                                cAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCtttt                                         >  1:1387758/1‑93 (MQ=255)

                                                 aGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTg                                        >  2:3235099/1‑93 (MQ=255)

                                                 aGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTg                                        >  2:4638847/1‑93 (MQ=255)

                                                  ggCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGt                                       >  2:2445292/1‑93 (MQ=255)

                                                   gCATTGCTGAAAGAAGCCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGtt                                      <  2:489711/93‑1 (MQ=255)

                                                   gCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGtt                                      <  1:6225573/93‑1 (MQ=255)

                                                   gCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGtt                                      <  1:6147903/93‑1 (MQ=255)

                                                    cATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTc                                     >  1:5225107/1‑93 (MQ=255)

                                                      ttGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGt                                   >  2:6196376/1‑93 (MQ=255)

                                                      ttGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGt                                   >  1:4156408/1‑93 (MQ=255)

                                                       tGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTg                                  <  2:5302381/93‑1 (MQ=255)

                                                        gCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGa                                 <  2:2743519/93‑1 (MQ=255)

                                                          tGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGaaa                               <  2:1774736/93‑1 (MQ=255)

                                                          tGAAAGAAACCAGGGCGCGAATGCATGGAAGTGCTCGCGTCCAGCAAGCCGCGCGGGAGGCCGTTGGCTGCGCGGATTTTTTTGTTCGGGaaa                               >  1:4304796/1‑93 (MQ=255)

                                                           gaaagaaaCCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAg                              >  1:3808101/1‑93 (MQ=255)

                                                            aaagaagCCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGa                             <  2:3906869/93‑1 (MQ=255)

                                                             aagaaaCCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGAc                            >  1:208859/1‑93 (MQ=255)

                                                             aagaaaCCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGAc                            <  2:2081084/93‑1 (MQ=255)

                                                             aagaaaCCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGAc                            >  2:2111301/1‑93 (MQ=255)

                                                              agaaaCCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGGGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGagc                           >  1:3990752/1‑91 (MQ=255)

                                                              agaaaCCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGAcc                           >  2:3550253/1‑93 (MQ=255)

                                                              agaaaCCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGAcc                           <  2:2092074/93‑1 (MQ=255)

                                                               gaaaCCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGAccc                          <  1:2211170/93‑1 (MQ=255)

                                                               gaaaCCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGAccc                          <  2:5818803/93‑1 (MQ=255)

                                                               aaaaCCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGAccc                          <  1:5381723/92‑1 (MQ=255)

                                                                aaaCCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCt                         <  1:3520646/93‑1 (MQ=255)

                                                                aaaCCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCt                         >  2:633310/1‑93 (MQ=255)

                                                                    cAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGgtg                     <  1:4744232/93‑1 (MQ=255)

                                                                     aGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGgtgt                    >  1:3094779/1‑93 (MQ=255)

                                                                     aGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGgtgt                    <  2:5596605/93‑1 (MQ=255)

                                                                       ggCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGTTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAg                  <  1:327704/93‑1 (MQ=255)

                                                                       ggCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAg                  >  1:5621522/1‑93 (MQ=255)

                                                                        gcgcGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGc                 >  1:1416453/1‑93 (MQ=255)

                                                                        gcgcGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGc                 <  1:3929377/93‑1 (MQ=255)

                                                                        gcgcAAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGc                 <  2:5574427/93‑1 (MQ=255)

                                                                         cgcgAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCg                <  1:2065625/93‑1 (MQ=255)

                                                                           cgAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTATTCGTGAAAGACCCTGGTGTAGCGTg              >  1:4482990/1‑93 (MQ=255)

                                                                            gAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTgg             >  1:2933426/1‑93 (MQ=255)

                                                                            gAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTgg             <  1:5132370/93‑1 (MQ=255)

                                                                            gAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTgg             >  1:1601366/1‑93 (MQ=255)

                                                                             aaTGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTggg            <  1:3014880/93‑1 (MQ=255)

                                                                             aaTGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTggg            >  1:5600410/1‑93 (MQ=255)

                                                                              aTGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGt           >  2:4504556/1‑93 (MQ=255)

                                                                               tGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTa          <  1:6012195/93‑1 (MQ=255)

                                                                               tGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTa          <  2:2762865/93‑1 (MQ=255)

                                                                                gCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTAc         <  2:723332/93‑1 (MQ=255)

                                                                                gCATGGTCGTGCTCGCGTCCAGCAAGCCGCACGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTAc         <  1:936823/93‑1 (MQ=255)

                                                                                  aTGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTAcag       >  2:4780937/1‑93 (MQ=255)

                                                                                  aTGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTAcag       >  1:5866668/1‑93 (MQ=255)

                                                                                   tgttCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTAcagc      <  1:2372106/90‑1 (MQ=255)

                                                                                   tGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTAcagc      >  1:755944/1‑93 (MQ=255)

                                                                                   tGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTAcagc      >  2:2480094/1‑93 (MQ=255)

                                                                                     gTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTAcagcag    <  1:3581617/93‑1 (MQ=255)

                                                                                     gTCGTGCTCGCGCCGCGCAAGCCGCGCTCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTAcagcag    <  2:1703909/93‑1 (MQ=255)

                                                                                       cGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGCAGCt  <  2:3583980/93‑1 (MQ=255)

                                                                                       cGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGCAGCt  <  1:4124691/93‑1 (MQ=255)

TGGGGCAGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTACTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGCAGCT  >  NC_000913/2798269‑2798448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCCTGGGGCAGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTACTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGCAGCTG  >  NC_000913/2798266‑2798449

TCCTGGGGCAGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTG                                                                                            >  SRR4302533.216368/1‑94 (MQ=60)

 CCTGGGGCAGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGC                                                                                           <  SRR4302533.4230296/94‑1 (MQ=60)

  CTGGGGCAGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCT                                                                                          <  SRR4302533.239280/94‑1 (MQ=60)

  CTGGGGCAGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCT                                                                                          <  SRR4302533.3904056/94‑1 (MQ=60)

  CTGGGGCAGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCT                                                                                          >  SRR4302533.2909052/1‑94 (MQ=60)

    GGGGCAGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCG                                                                                        >  SRR4302533.1768342/1‑94 (MQ=60)

       GCAGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGT                                                                                     >  SRR4302533.6198117/1‑94 (MQ=60)

        CAGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTC                                                                                    >  SRR4302533.1702643/1‑94 (MQ=60)

         AGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCC                                                                                   <  SRR4302533.1244018/94‑1 (MQ=60)

         AGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCC                                                                                   >  SRR4302533.2844192/1‑94 (MQ=60)

         AGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCC                                                                                   <  SRR4302533.5780799/94‑1 (MQ=60)

           CGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAG                                                                                 <  SRR4302533.5317244/94‑1 (MQ=60)

            GACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGC                                                                                >  SRR4302533.2519290/1‑94 (MQ=60)

              CGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAA                                                                              <  SRR4302533.4910913/94‑1 (MQ=60)

              CGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAA                                                                              <  SRR4302533.5389358/94‑1 (MQ=60)

               GCCAAAGGGGAAGCTGAAGGCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAG                                                                             >  SRR4302533.224413/1‑94 (MQ=60)

               GCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAG                                                                             <  SRR4302533.3293136/94‑1 (MQ=60)

               GCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGGGCTCGCGTCCAGCAAG                                                                             >  SRR4302533.4576720/1‑94 (MQ=60)

                CCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGC                                                                            >  SRR4302533.2234573/1‑94 (MQ=60)

                 CAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCC                                                                           >  SRR4302533.5285416/1‑94 (MQ=60)

                  AAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCG                                                                          >  SRR4302533.396524/1‑94 (MQ=60)

                  AAAGGGGAAGCTAAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCG                                                                          <  SRR4302533.5280501/94‑1 (MQ=60)

                   AAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGC                                                                         >  SRR4302533.4151033/1‑94 (MQ=60)

                   AAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGC                                                                         >  SRR4302533.610811/1‑94 (MQ=60)

                    AGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCG                                                                        <  SRR4302533.3675917/94‑1 (MQ=60)

                    AGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCG                                                                        <  SRR4302533.1235922/94‑1 (MQ=60)

                      GGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCG                                                                      <  SRR4302533.2015288/94‑1 (MQ=60)

                      GGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCG                                                                      <  SRR4302533.2275503/94‑1 (MQ=60)

                      GGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCG                                                                      <  SRR4302533.352878/94‑1 (MQ=60)

                       GGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGGGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGG                                                                     >  SRR4302533.922718/1‑94 (MQ=60)

                        GAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCG                                                                    >  SRR4302533.2027127/1‑94 (MQ=60)

                         AAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGA                                                                   <  SRR4302533.5196186/94‑1 (MQ=60)

                         AAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGA                                                                   <  SRR4302533.5242812/94‑1 (MQ=60)

                          AGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGAT                                                                  <  SRR4302533.3486290/94‑1 (MQ=60)

                          AGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGAT                                                                  <  SRR4302533.2713162/94‑1 (MQ=60)

                           GCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATG                                                                 <  SRR4302533.5936086/94‑1 (MQ=60)

                           GCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATG                                                                 >  SRR4302533.5506203/1‑94 (MQ=60)

                            CTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGC                                                                <  SRR4302533.3078503/94‑1 (MQ=60)

                            CTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGC                                                                >  SRR4302533.6181940/1‑94 (MQ=60)

                            CTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGC                                                                >  SRR4302533.3450037/1‑94 (MQ=60)

                            CTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGC                                                                >  SRR4302533.5597541/1‑94 (MQ=60)

                             TGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCC                                                               >  SRR4302533.1516406/1‑94 (MQ=60)

                             TGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCC                                                               <  SRR4302533.1555790/94‑1 (MQ=60)

                             TGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCC                                                               >  SRR4302533.4144004/1‑94 (MQ=60)

                              GAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCG                                                              >  SRR4302533.5122262/1‑94 (MQ=60)

                              GAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCG                                                              >  SRR4302533.5076242/1‑94 (MQ=60)

                              GAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCG                                                              <  SRR4302533.3010288/94‑1 (MQ=60)

                                 GCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTG                                                           <  SRR4302533.4823996/94‑1 (MQ=60)

                                 GCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTG                                                           <  SRR4302533.1093529/94‑1 (MQ=60)

                                 GCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTG                                                           <  SRR4302533.4556601/94‑1 (MQ=60)

                                  CCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGG                                                          <  SRR4302533.2738649/94‑1 (MQ=60)

                                   CGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGC                                                         >  SRR4302533.6084112/1‑94 (MQ=60)

                                   CGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGC                                                         >  SRR4302533.2185357/1‑94 (MQ=60)

                                      ACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGC                                                      >  SRR4302533.5346826/1‑94 (MQ=60)

                                      ACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGC                                                      <  SRR4302533.1442199/94‑1 (MQ=60)

                                       CGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCG                                                     <  SRR4302533.6137212/94‑1 (MQ=60)

                                        GCAGTAAAGCTCAGGCATGGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGC                                                    <  SRR4302533.1135513/94‑1 (MQ=60)

                                         CAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCG                                                   >  SRR4302533.2306204/1‑94 (MQ=60)

                                            TAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGAT                                                <  SRR4302533.445102/94‑1 (MQ=60)

                                             AAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATT                                               <  SRR4302533.3615138/94‑1 (MQ=60)

                                              AAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTC                                              <  SRR4302533.651895/94‑1 (MQ=60)

                                               AGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCTCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCT                                             <  SRR4302533.3407213/94‑1 (MQ=60)

                                               AGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCT                                             <  SRR4302533.5438317/94‑1 (MQ=60)

                                                 CTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTT                                           >  SRR4302533.1653490/1‑94 (MQ=60)

                                                 CTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTT                                           <  SRR4302533.1415498/94‑1 (MQ=60)

                                                 CTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTT                                           >  SRR4302533.4409489/1‑94 (MQ=60)

                                                 CTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTT                                           >  SRR4302533.3376309/1‑94 (MQ=60)

                                                 CTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTT                                           >  SRR4302533.6263440/1‑94 (MQ=60)

                                                 CTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTT                                           >  SRR4302533.2099825/1‑94 (MQ=60)

                                                  TCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTT                                          <  SRR4302533.4646183/94‑1 (MQ=60)

                                                  TCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTT                                          <  SRR4302533.1059862/94‑1 (MQ=60)

                                                  TCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTT                                          <  SRR4302533.5849563/94‑1 (MQ=60)

                                                  TCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTT                                          >  SRR4302533.1396113/1‑94 (MQ=60)

                                                  TCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTT                                          <  SRR4302533.241852/94‑1 (MQ=60)

                                                  TCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTT                                          >  SRR4302533.2889157/1‑94 (MQ=60)

                                                   CAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTG                                         >  SRR4302533.118968/1‑94 (MQ=60)

                                                      GCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTC                                      >  SRR4302533.5256551/1‑94 (MQ=60)

                                                      GCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTC                                      <  SRR4302533.6262872/94‑1 (MQ=60)

                                                      GCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTC                                      <  SRR4302533.6184914/94‑1 (MQ=60)

                                                       CATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCG                                     <  SRR4302533.5573971/94‑1 (MQ=60)

                                                       CATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCG                                     <  SRR4302533.4749948/94‑1 (MQ=60)

                                                        ATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGT                                    >  SRR4302533.4181589/1‑94 (MQ=60)

                                                            CTGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAA                                >  SRR4302533.888350/1‑94 (MQ=60)

                                                            CTGAAAGAAACCAGGGCGCGAATGCATGGAAGTGCTCGCGTCCAGCAAGCCGCGCGGGAGGCCGTTGGCTGCGCGGATTTTTTTGTTCGGGAAA                                >  SRR4302533.4330696/1‑94 (MQ=60)

                                                             TGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAG                               >  SRR4302533.3831396/1‑94 (MQ=60)

                                                             TGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAG                               >  SRR4302533.2514778/1‑94 (MQ=60)

                                                             TGAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAG                               >  SRR4302533.2107891/1‑94 (MQ=60)

                                                              GAAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGA                              >  SRR4302533.2212767/1‑94 (MQ=60)

                                                               AAAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGAC                             >  SRR4302533.210180/1‑94 (MQ=60)

                                                                AAGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGGGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGAGC                            >  SRR4302533.4015056/1‑94 (MQ=60)

                                                                 AGAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCC                           <  SRR4302533.4916940/94‑1 (MQ=60)

                                                                  GAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCT                          <  SRR4302533.2224805/94‑1 (MQ=60)

                                                                  GAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCT                          <  SRR4302533.5653308/94‑1 (MQ=60)

                                                                  AAAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCT                          <  SRR4302533.5414055/94‑1 (MQ=60)

                                                                   AAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTG                         <  SRR4302533.3542349/94‑1 (MQ=60)

                                                                   AAACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTG                         <  SRR4302533.2660245/94‑1 (MQ=60)

                                                                    AACCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGG                        >  SRR4302533.446425/1‑94 (MQ=60)

                                                                      CCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGCTTCTTTTGTTCGTGAAAGACCCTGGTG                      >  SRR4302533.2411239/1‑94 (MQ=60)

                                                                      CCAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTG                      <  SRR4302533.1238681/94‑1 (MQ=60)

                                                                       CAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGT                     >  SRR4302533.3113804/1‑94 (MQ=60)

                                                                       CAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGT                     >  SRR4302533.3324075/1‑94 (MQ=60)

                                                                       CAGGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGT                     <  SRR4302533.4772992/94‑1 (MQ=60)

                                                                         GGGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAG                   >  SRR4302533.5655502/1‑94 (MQ=60)

                                                                          GGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGTTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGC                  <  SRR4302533.329698/94‑1 (MQ=60)

                                                                          GGCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGC                  >  SRR4302533.1425023/1‑94 (MQ=60)

                                                                           GCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCG                 <  SRR4302533.3953366/94‑1 (MQ=60)

                                                                           GCGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCG                 <  SRR4302533.3953367/94‑1 (MQ=60)

                                                                            CGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGT                <  SRR4302533.2078355/94‑1 (MQ=60)

                                                                            CGCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGT                >  SRR4302533.3902327/1‑94 (MQ=60)

                                                                             GCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTG               >  SRR4302533.3228564/1‑94 (MQ=60)

                                                                             GCGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTATTCGTGAAAGACCCTGGTGTAGCGTG               >  SRR4302533.4510138/1‑94 (MQ=60)

                                                                              CGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGG              <  SRR4302533.4910152/94‑1 (MQ=60)

                                                                              CGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGG              >  SRR4302533.931191/1‑94 (MQ=60)

                                                                              CGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGG              >  SRR4302533.2951364/1‑94 (MQ=60)

                                                                              CGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGG              <  SRR4302533.1849593/94‑1 (MQ=60)

                                                                              CGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGG              >  SRR4302533.1611061/1‑94 (MQ=60)

                                                                              CGAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGG              <  SRR4302533.3552277/94‑1 (MQ=60)

                                                                               GAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGG             >  SRR4302533.5634247/1‑94 (MQ=60)

                                                                               GAATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGG             <  SRR4302533.5163375/94‑1 (MQ=60)

                                                                                AATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGT            <  SRR4302533.3033317/94‑1 (MQ=60)

                                                                                AATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGT            <  SRR4302533.538610/94‑1 (MQ=60)

                                                                                 ATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTC           >  SRR4302533.4194443/1‑94 (MQ=60)

                                                                                 ATGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTA           >  SRR4302533.5623084/1‑94 (MQ=60)

                                                                                  TGCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTAC          <  SRR4302533.6048619/94‑1 (MQ=60)

                                                                                   GCATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACA         >  SRR4302533.4241361/1‑94 (MQ=60)

                                                                                   GCATGGTCGTGCTCGCGTCCAGCAAGCCGCACGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACA         <  SRR4302533.942328/94‑1 (MQ=60)

                                                                                    CATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAG        >  SRR4302533.5902131/1‑94 (MQ=60)

                                                                                     ATGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGC       >  SRR4302533.760392/1‑94 (MQ=60)

                                                                                      TGTTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGCA      <  SRR4302533.2386783/94‑1 (MQ=60)

                                                                                      TGGTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGCA      <  SRR4302533.2426755/94‑1 (MQ=60)

                                                                                        GTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGCAGC    <  SRR4302533.3603680/94‑1 (MQ=60)

                                                                                        GTCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGCAGC    <  SRR4302533.1526/94‑1 (MQ=60)

                                                                                         TCGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGCAGCT   <  SRR4302533.5527827/94‑1 (MQ=60)

                                                                                          CGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGCAGCTG  >  SRR4302533.6002776/1‑94 (MQ=60)

                                                                                          CGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGCAGCTG  <  SRR4302533.4149731/94‑1 (MQ=60)

                                                                                          CGTGCTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGCAGCTG  <  SRR4302533.2136674/94‑1 (MQ=60)

TCCTGGGGCAGCGACGCCAAAGGGGAAGCTGAAGCCGCACGCAGTAAAGCTCAGGCATTGCTGAAAGAAACCAGGGCGCGAATGCATGGTCGTACTCGCGTCCAGCAAGCCGCGCGCGATGCCGTTGGCTGCGCGGATTCTTTTGTTCGTGAAAGACCCTGGTGTAGCGTGGGTACAGCAGCTG  >  NC_000913/2798266‑2798449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`