Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,826,590 T→C intergenic (+51/‑54) srlD → / → gutM glucitol (sorbitol)‑6‑phosphate dehydrogenase/glucitol operon activator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,826,5900TC100.0% 752.8 / NA 231intergenic (+51/‑54)srlD/gutMglucitol (sorbitol)‑6‑phosphate dehydrogenase/glucitol operon activator
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (129/102);  total (129/102)

Only 100 of 235 total aligned reads displayed.

ACAGTCGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGATGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCC  >  NC_000913/2826500‑2826679
                                                                                          |                                                                                         
  aGTCGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACgcgc                                                                                       >  2:2168601/1‑93 (MQ=255)
   gTCGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCt                                                                                      >  1:4970496/1‑93 (MQ=255)
      gATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGTGCACCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTAct                                                                                   >  2:3171081/1‑92 (MQ=255)
      gATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACg                                                                                   >  2:5099020/1‑93 (MQ=255)
      gATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACg                                                                                   >  1:2125556/1‑93 (MQ=255)
       aTCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATAAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGc                                                                                  <  2:149090/93‑1 (MQ=255)
        tCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCt                                                                                 >  2:3288322/1‑93 (MQ=255)
        tCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCt                                                                                 <  1:4573381/93‑1 (MQ=255)
        tCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCt                                                                                 >  1:5309736/1‑93 (MQ=255)
         catggTCCCCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCtc                                                                                <  1:2187887/89‑1 (MQ=255)
         cAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCtc                                                                                >  2:5993056/1‑93 (MQ=255)
          aaTGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCtca                                                                               >  1:5011555/1‑93 (MQ=255)
          aaTGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCtca                                                                               >  2:3953312/1‑93 (MQ=255)
           aTGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCtcat                                                                              >  2:2364771/1‑93 (MQ=255)
            tGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGctcctc                                                                             >  2:320798/1‑93 (MQ=255)
              tCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAg                                                                           <  1:558854/93‑1 (MQ=255)
              tCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAg                                                                           >  1:1130712/1‑93 (MQ=255)
               cACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAgg                                                                          <  1:299237/93‑1 (MQ=255)
                 ccGGGGGTCAGGTTATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCa                                                                        <  1:4295821/93‑1 (MQ=255)
                 ccGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCa                                                                        <  1:1354/93‑1 (MQ=255)
                  cggcggTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCAt                                                                       <  2:5556800/93‑1 (MQ=255)
                   ggcggTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATa                                                                      <  2:705090/93‑1 (MQ=255)
                    gcggTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATAc                                                                     <  2:2324827/93‑1 (MQ=255)
                     cggTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACa                                                                    <  1:5554610/93‑1 (MQ=255)
                     cggTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACa                                                                    <  1:888994/93‑1 (MQ=255)
                      ggTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAg                                                                   <  2:2594384/93‑1 (MQ=255)
                       gTCAGGTGATTTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAgg                                                                  <  2:266889/93‑1 (MQ=255)
                       gTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAgg                                                                  >  2:2450595/1‑93 (MQ=255)
                       gTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAgg                                                                  >  2:100316/1‑93 (MQ=255)
                        tCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGa                                                                 >  1:1976949/1‑93 (MQ=255)
                            gTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTc                                                             <  1:1025948/93‑1 (MQ=255)
                            gTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTc                                                             <  1:3046732/93‑1 (MQ=255)
                              gATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCg                                                           <  1:4010406/93‑1 (MQ=255)
                              gATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCg                                                           >  1:4187581/1‑93 (MQ=255)
                              gATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCg                                                           >  2:2767968/1‑93 (MQ=255)
                              gATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCg                                                           >  1:68636/1‑93 (MQ=255)
                               aTGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGc                                                          <  1:4844130/93‑1 (MQ=255)
                               aTGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGc                                                          >  2:2860617/1‑93 (MQ=255)
                                tGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGcc                                                         <  1:3944580/93‑1 (MQ=255)
                                 gTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCa                                                        >  2:6258112/1‑93 (MQ=255)
                                   tCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACt                                                      >  1:3624546/1‑93 (MQ=255)
                                   tCTGATCAACAGCGGAGATCCATTAAGGATCGCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACt                                                      <  2:5484339/93‑1 (MQ=255)
                                    cTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTa                                                     >  1:957094/1‑93 (MQ=255)
                                    cTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTa                                                     >  1:1173675/1‑93 (MQ=255)
                                     tGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTAc                                                    >  2:1732939/1‑93 (MQ=255)
                                     tGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTAc                                                    >  1:4385999/1‑93 (MQ=255)
                                      gATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACa                                                   >  1:2702489/1‑93 (MQ=255)
                                       aTCAACAGGGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACAt                                                  <  2:1207850/93‑1 (MQ=255)
                                        tCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACAtt                                                 <  2:943119/93‑1 (MQ=255)
                                        tCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACAtt                                                 >  2:2957504/1‑93 (MQ=255)
                                        tCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACAtt                                                 <  1:3358797/93‑1 (MQ=255)
                                         cAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTa                                                <  2:2982988/93‑1 (MQ=255)
                                         cAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTa                                                >  1:2286555/1‑93 (MQ=255)
                                          aaCAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTaa                                               <  1:389153/93‑1 (MQ=255)
                                           aCAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAg                                              <  2:1942903/93‑1 (MQ=255)
                                           aCAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAg                                              <  1:5471251/93‑1 (MQ=255)
                                             aGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGa                                            <  2:6203029/93‑1 (MQ=255)
                                              gCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGaa                                           >  2:4902980/1‑93 (MQ=255)
                                               cGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGaaa                                          <  1:4486565/93‑1 (MQ=255)
                                                  agaTCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGt                                       >  2:5006296/1‑93 (MQ=255)
                                                   gaTCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGtt                                      <  2:1598817/93‑1 (MQ=255)
                                                     tCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTAt                                    <  2:1831451/93‑1 (MQ=255)
                                                      ccATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATg                                   <  1:4021734/93‑1 (MQ=255)
                                                      ccATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATg                                   <  1:3665431/93‑1 (MQ=255)
                                                        aTTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGt                                 <  2:2056894/93‑1 (MQ=255)
                                                         ttAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTa                                >  1:2827052/1‑93 (MQ=255)
                                                          tAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTAt                               >  1:1552731/1‑93 (MQ=255)
                                                          tAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTAt                               >  1:2509270/1‑93 (MQ=255)
                                                           aaGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATc                              >  2:3634335/1‑93 (MQ=255)
                                                           aaGAATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATc                              <  2:4453877/93‑1 (MQ=255)
                                                            aGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATcc                             >  2:1630935/1‑93 (MQ=255)
                                                             ggATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCg                            >  2:250206/1‑93 (MQ=255)
                                                                tctcCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCAc                         >  1:3526531/1‑93 (MQ=255)
                                                                tctcCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCAc                         >  2:4708007/1‑93 (MQ=255)
                                                                    cGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACtcat                     <  1:1691863/93‑1 (MQ=255)
                                                                     gTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACtcatc                    <  1:3795825/93‑1 (MQ=255)
                                                                     gTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACtcatc                    <  2:4510367/93‑1 (MQ=255)
                                                                      tGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACtcatca                   <  2:3677049/93‑1 (MQ=255)
                                                                      tGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACtcatca                   >  1:1393125/1‑93 (MQ=255)
                                                                       gagaCTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCAc                  <  2:785628/93‑1 (MQ=255)
                                                                       gagaCTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCAc                  <  1:5665456/93‑1 (MQ=255)
                                                                        aaaCTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTCCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCAcc                 <  2:5327119/91‑1 (MQ=255)
                                                                          aCTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGt               <  1:5138313/93‑1 (MQ=255)
                                                                          aCTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGt               <  1:3767558/93‑1 (MQ=255)
                                                                            tataGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCg             >  1:371105/1‑93 (MQ=255)
                                                                            tataGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCg             >  1:1890243/1‑93 (MQ=255)
                                                                              taGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGcc           >  1:2397466/1‑93 (MQ=255)
                                                                                gAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGt         >  2:5893003/1‑93 (MQ=255)
                                                                                gAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGt         >  1:6289732/1‑93 (MQ=255)
                                                                                   tGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTAt      <  2:5956736/93‑1 (MQ=255)
                                                                                    gCCTGACGCGCTACGCTCATCAGGCATACAGGACTTTCGCCACTACATTAAGGAAAAGTTATGGTATCCGCAATCATCACCGTCGCCGTTATc     >  2:1368956/1‑93 (MQ=255)
                                                                                    gCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATc     <  2:5738394/93‑1 (MQ=255)
                                                                                    gCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATc     >  1:5872765/1‑93 (MQ=255)
                                                                                     ccTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCg    >  1:6109691/1‑93 (MQ=255)
                                                                                     ccTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCg    >  2:564112/1‑93 (MQ=255)
                                                                                      cTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGGCGTTATCGc   >  1:5745456/1‑93 (MQ=255)
                                                                                      cTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGc   >  2:438703/1‑93 (MQ=255)
                                                                                      cTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGc   >  1:5813626/1‑93 (MQ=255)
                                                                                       tGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGcc  <  2:5232210/93‑1 (MQ=255)
                                                                                       tGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGcc  >  2:4626809/1‑93 (MQ=255)
                                                                                          |                                                                                         
ACAGTCGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGATGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCC  >  NC_000913/2826500‑2826679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGGACAGTCGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGATGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGG  >  NC_000913/2826497‑2826682
                                                                                             |                                                                                            
CGGACGGTCGATCAATGTCCCGGGCGGTCAGGTGATGTTCTGACCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGAC                                                                                              <  SRR4302533.2225575/94‑1 (MQ=60)
CGGACAGTCGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGAC                                                                                              <  SRR4302533.588506/94‑1 (MQ=60)
 GGACAGTCGATCAATGTCACCGGCGGTCAGTTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACG                                                                                             <  SRR4302533.1912102/94‑1 (MQ=60)
 GGACAGTCGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACG                                                                                             <  SRR4302533.930930/94‑1 (MQ=60)
 GGACAGTCGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACG                                                                                             <  SRR4302533.6021722/94‑1 (MQ=60)
 GGACAGTCGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACG                                                                                             >  SRR4302533.4930250/1‑94 (MQ=60)
 GGACAGTCGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACG                                                                                             >  SRR4302533.5164286/1‑94 (MQ=60)
  GACAGTCGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGC                                                                                            >  SRR4302533.694951/1‑94 (MQ=60)
     AGTCGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCT                                                                                         >  SRR4302533.5000632/1‑94 (MQ=60)
      GTCGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTA                                                                                        <  SRR4302533.5611565/94‑1 (MQ=60)
        CGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACG                                                                                      >  SRR4302533.2138661/1‑94 (MQ=60)
          ATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCT                                                                                    >  SRR4302533.5341556/1‑94 (MQ=60)
          ATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCT                                                                                    >  SRR4302533.971101/1‑94 (MQ=60)
           TCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTC                                                                                   >  SRR4302533.4900164/1‑94 (MQ=60)
           TCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTC                                                                                   <  SRR4302533.4601098/94‑1 (MQ=60)
            catggtccCCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCA                                                                                  <  SRR4302533.2201365/86‑1 (MQ=60)
            CAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCA                                                                                  >  SRR4302533.5041920/1‑94 (MQ=60)
            CAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCA                                                                                  >  SRR4302533.2809980/1‑94 (MQ=60)
             AATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCAT                                                                                 >  SRR4302533.5585311/1‑94 (MQ=60)
               TGTCCCCGGCGGTCAGTTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCA                                                                               <  SRR4302533.5432040/94‑1 (MQ=60)
               TGTCACCGGCGGTCAGGTGATGTTCTTATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCA                                                                               >  SRR4302533.5974991/1‑94 (MQ=60)
               TGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCA                                                                               <  SRR4302533.4079982/94‑1 (MQ=60)
                GTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAG                                                                              >  SRR4302533.3929288/1‑94 (MQ=60)
                GTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAG                                                                              >  SRR4302533.1137431/1‑94 (MQ=60)
                 TCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGG                                                                             <  SRR4302533.562175/94‑1 (MQ=60)
                  CACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGC                                                                            <  SRR4302533.301069/94‑1 (MQ=60)
                    CCGGGGGTCAGGTTATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCAT                                                                          <  SRR4302533.4321659/94‑1 (MQ=60)
                    CCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCAT                                                                          <  SRR4302533.1368/94‑1 (MQ=60)
                        CGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAG                                                                      <  SRR4302533.894215/94‑1 (MQ=60)
                        CGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAG                                                                      <  SRR4302533.5588155/94‑1 (MQ=60)
                        CGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAG                                                                      <  SRR4302533.595259/94‑1 (MQ=60)
                         GGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGG                                                                     >  SRR4302533.3759306/1‑94 (MQ=60)
                          GTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGA                                                                    >  SRR4302533.1989056/1‑94 (MQ=60)
                            CAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACT                                                                  <  SRR4302533.3919038/94‑1 (MQ=60)
                            CAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACT                                                                  >  SRR4302533.4034743/1‑94 (MQ=60)
                            AAGGTGATGTTCTGATCAACAGCGAAGATCCATTAAGGAACTCGGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACT                                                                  <  SRR4302533.1268310/94‑1 (MQ=60)
                             AGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTT                                                                 >  SRR4302533.3785792/1‑94 (MQ=60)
                               GTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCC                                                               >  SRR4302533.5665127/1‑94 (MQ=60)
                               GTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCC                                                               >  SRR4302533.1150543/1‑94 (MQ=60)
                               GTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCC                                                               <  SRR4302533.1031977/94‑1 (MQ=60)
                               GTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCC                                                               <  SRR4302533.3065386/94‑1 (MQ=60)
                               GTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCC                                                               <  SRR4302533.3431776/94‑1 (MQ=60)
                                TGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCG                                                              <  SRR4302533.1279806/94‑1 (MQ=60)
                                TGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCG                                                              >  SRR4302533.69084/1‑94 (MQ=60)
                                TGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCG                                                              >  SRR4302533.1656017/1‑94 (MQ=60)
                                TGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCG                                                              >  SRR4302533.4212940/1‑94 (MQ=60)
                                TGAGGTTTTGATCAACGGGGAAGATCCATTAGGGATCCCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCG                                                              <  SRR4302533.2199193/94‑1 (MQ=60)
                                 GATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGC                                                             <  SRR4302533.2510124/94‑1 (MQ=60)
                                 GATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGC                                                             <  SRR4302533.4034820/94‑1 (MQ=60)
                                  ATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCC                                                            <  SRR4302533.4873489/94‑1 (MQ=60)
                                  ATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCC                                                            >  SRR4302533.3034509/1‑94 (MQ=60)
                                   TGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCA                                                           >  SRR4302533.1948481/1‑94 (MQ=60)
                                   TGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCA                                                           <  SRR4302533.3968642/94‑1 (MQ=60)
                                    GTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCAC                                                          >  SRR4302533.635142/1‑94 (MQ=60)
                                     TTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACT                                                         >  SRR4302533.3646850/1‑94 (MQ=60)
                                      TCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTA                                                        >  SRR4302533.962723/1‑94 (MQ=60)
                                      TCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTA                                                        >  SRR4302533.1180719/1‑94 (MQ=60)
                                       CTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTAC                                                       >  SRR4302533.4412482/1‑94 (MQ=60)
                                        TGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACA                                                      >  SRR4302533.2719066/1‑94 (MQ=60)
                                         GATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACAT                                                     >  SRR4302533.2012557/1‑94 (MQ=60)
                                          ATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATT                                                    <  SRR4302533.5241917/94‑1 (MQ=60)
                                           TCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTA                                                   >  SRR4302533.2300708/1‑94 (MQ=60)
                                           TCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTA                                                   <  SRR4302533.3379551/94‑1 (MQ=60)
                                             AACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAG                                                 <  SRR4302533.391502/94‑1 (MQ=60)
                                              ACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGG                                                <  SRR4302533.5504223/94‑1 (MQ=60)
                                              ACAGCGGAGATCAATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGG                                                <  SRR4302533.3723598/94‑1 (MQ=60)
                                               CAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGA                                               <  SRR4302533.5219938/94‑1 (MQ=60)
                                                  CGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAA                                            <  SRR4302533.4322981/94‑1 (MQ=60)
                                                  CGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAA                                            >  SRR4302533.3066660/1‑94 (MQ=60)
                                                  CGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAA                                            <  SRR4302533.4513728/94‑1 (MQ=60)
                                                   gaacgtcaattaagccgCTCCGGGAGACGATAGAATGCCTGACTCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAG                                           <  SRR4302533.1270934/77‑1 (MQ=60)
                                                   GGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAG                                           <  SRR4302533.4051525/94‑1 (MQ=60)
                                                   GGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAG                                           >  SRR4302533.5901956/1‑94 (MQ=60)
                                                    GAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGT                                          <  SRR4302533.5113732/94‑1 (MQ=60)
                                                    GAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGT                                          <  SRR4302533.5716201/94‑1 (MQ=60)
                                                     AGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTT                                         >  SRR4302533.4424277/1‑94 (MQ=60)
                                                      GATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTA                                        <  SRR4302533.6274418/94‑1 (MQ=60)
                                                       ATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTAT                                       <  SRR4302533.3812831/94‑1 (MQ=60)
                                                        TCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATG                                      <  SRR4302533.3587802/94‑1 (MQ=60)
                                                         CCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGG                                     <  SRR4302533.3687964/94‑1 (MQ=60)
                                                         CCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGG                                     <  SRR4302533.4559561/94‑1 (MQ=60)
                                                         CCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGG                                     <  SRR4302533.4843337/94‑1 (MQ=60)
                                                         CCATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGG                                     <  SRR4302533.4046222/94‑1 (MQ=60)
                                                          CATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGT                                    >  SRR4302533.1800336/1‑94 (MQ=60)
                                                           ATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTA                                   >  SRR4302533.4505133/1‑94 (MQ=60)
                                                           ATTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTA                                   >  SRR4302533.2844447/1‑94 (MQ=60)
                                                            TTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTAT                                  >  SRR4302533.1562081/1‑94 (MQ=60)
                                                            TTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTAT                                  >  SRR4302533.2524730/1‑94 (MQ=60)
                                                            TTAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTAT                                  >  SRR4302533.1561247/1‑94 (MQ=60)
                                                             TAAGGATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATC                                 <  SRR4302533.4309829/94‑1 (MQ=60)
                                                             TAAGAATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATC                                 <  SRR4302533.2227067/94‑1 (MQ=60)
                                                                 GATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCA                             >  SRR4302533.2610806/1‑94 (MQ=60)
                                                                  ATCTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCAC                            >  SRR4302533.3548262/1‑94 (MQ=60)
                                                                    CTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTC                          >  SRR4302533.2984253/1‑94 (MQ=60)
                                                                    CTCCGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTC                          >  SRR4302533.3668104/1‑94 (MQ=60)
                                                                       CGTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATC                       <  SRR4302533.1702108/94‑1 (MQ=60)
                                                                        GTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCA                      >  SRR4302533.5708379/1‑94 (MQ=60)
                                                                        GTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCA                      <  SRR4302533.3819058/94‑1 (MQ=60)
                                                                        GTGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCA                      >  SRR4302533.1401518/1‑94 (MQ=60)
                                                                         TGAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCAC                     >  SRR4302533.2779371/1‑94 (MQ=60)
                                                                          GAGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACC                    <  SRR4302533.5699684/94‑1 (MQ=60)
                                                                           AGACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCG                   <  SRR4302533.2408472/94‑1 (MQ=60)
                                                                            GACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGT                  >  SRR4302533.1396172/1‑94 (MQ=60)
                                                                            GACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGT                  >  SRR4302533.2050518/1‑94 (MQ=60)
                                                                            GACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGT                  >  SRR4302533.3850793/1‑94 (MQ=60)
                                                                            GACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGT                  <  SRR4302533.698158/94‑1 (MQ=60)
                                                                             ACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTC                 <  SRR4302533.5169362/94‑1 (MQ=60)
                                                                             ACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTC                 <  SRR4302533.3790660/94‑1 (MQ=60)
                                                                             ACTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTC                 >  SRR4302533.5787054/1‑94 (MQ=60)
                                                                              CTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCG                >  SRR4302533.373345/1‑94 (MQ=60)
                                                                              CTATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCG                >  SRR4302533.1901784/1‑94 (MQ=60)
                                                                               TATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGC               >  SRR4302533.55449/1‑94 (MQ=60)
                                                                                ATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCC              >  SRR4302533.2412265/1‑94 (MQ=60)
                                                                                ATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCC              >  SRR4302533.1687654/1‑94 (MQ=60)
                                                                                ATAGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCC              >  SRR4302533.5007615/1‑94 (MQ=60)
                                                                                  AGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGT            >  SRR4302533.6327244/1‑94 (MQ=60)
                                                                                  AGAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGT            >  SRR4302533.3233613/1‑94 (MQ=60)
                                                                                   GAATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGCTAACGTGATGGGATCCGCACTCATCACCGgcgctgcg           >  SRR4302533.928790/1‑86 (MQ=60)
                                                                                     ATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCGGCACTCATCACCGTCGCCGTTAT         <  SRR4302533.105508/94‑1 (MQ=60)
                                                                                     ATGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTAT         <  SRR4302533.4039852/94‑1 (MQ=60)
                                                                                      TGCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATC        >  SRR4302533.5908261/1‑94 (MQ=60)
                                                                                       GCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCG       >  SRR4302533.6146574/1‑94 (MQ=60)
                                                                                       GCCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCG       >  SRR4302533.2389901/1‑94 (MQ=60)
                                                                                        CCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGGCGTTATCGC      >  SRR4302533.5780126/1‑94 (MQ=60)
                                                                                        CCTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGC      >  SRR4302533.5848738/1‑94 (MQ=60)
                                                                                         CTGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCC     >  SRR4302533.4879985/1‑94 (MQ=60)
                                                                                          TGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCT    <  SRR4302533.3555601/94‑1 (MQ=60)
                                                                                          TGACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCT    >  SRR4302533.5053713/1‑94 (MQ=60)
                                                                                           GACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTG   <  SRR4302533.3260841/94‑1 (MQ=60)
                                                                                           GACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTG   >  SRR4302533.1098562/1‑94 (MQ=60)
                                                                                            ACGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGG  <  SRR4302533.5585473/94‑1 (MQ=60)
                                                                                             |                                                                                            
CGGACAGTCGATCAATGTCACCGGCGGTCAGGTGATGTTCTGATCAACAGCGGAGATCCATTAAGGATCTCCGTGAGACTATAGAATGCCTGATGCGCTACGCTCATCAGGCATACAGGACTTCCGCCACTACATTAAGGAAAAGTTATGGTATCCGCACTCATCACCGTCGCCGTTATCGCCTGG  >  NC_000913/2826497‑2826682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑