Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1548	369.5	20095359	96.9%	19472402	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,834,144	T→C	L435L (TTA→TTG)	hypF ←	transcriptional regulatory protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,834,144	0	T	C	100.0%	864.9 / NA	271	L435L (TTA→TTG)	hypF	transcriptional regulatory protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (149/122); total (149/122)

Only 100 of 283 total aligned reads displayed.

TTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCA  >  NC_000913/2834054‑2834233

ttCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCaa                                                                                         <  1:476061/93‑1 (MQ=255)

ttCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCaa                                                                                         >  2:6529402/1‑93 (MQ=255)

   aCGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGc                                                                                      >  1:3181174/1‑93 (MQ=255)

     gcgcCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCtt                                                                                    <  1:9413573/93‑1 (MQ=255)

     gcgcCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAAGCGCAAAGCtt                                                                                    >  2:9219883/1‑93 (MQ=255)

     gcgcCCACTGGCTGGAGACATAACCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGTTGTTTTGCATCAGGCGCAACGCtt                                                                                    >  2:7023568/1‑93 (MQ=255)

        cccACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTcgc                                                                                 >  1:4955224/1‑93 (MQ=255)

           aCTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCCACGCTTCGCGcc                                                                              >  2:7784109/1‑93 (MQ=255)

           aCTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGcc                                                                              >  1:4510742/1‑93 (MQ=255)

             tggctggAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCAc                                                                            >  2:8641787/1‑93 (MQ=255)

             tggctggAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCAc                                                                            <  2:1999275/93‑1 (MQ=255)

              ggctggAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACt                                                                           >  1:4306044/1‑93 (MQ=255)

               gctggAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTg                                                                          >  2:7486851/1‑93 (MQ=255)

                ctggAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGc                                                                         <  2:5197416/93‑1 (MQ=255)

                 tggAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCa                                                                        >  1:5406989/1‑93 (MQ=255)

                 tggAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCa                                                                        >  2:9158064/1‑93 (MQ=255)

                 tggAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCa                                                                        >  1:8066154/1‑93 (MQ=255)

                  ggAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCAt                                                                       >  2:3478595/1‑93 (MQ=255)

                   gagaCATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATc                                                                      >  2:1535669/1‑93 (MQ=255)

                    agaCATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCt                                                                     <  2:5279927/93‑1 (MQ=255)

                    agaCATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCt                                                                     <  1:5080299/93‑1 (MQ=255)

                     gaCATAGCCCGGATGCGCTTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCAATGCATCTg                                                                    <  2:2261303/93‑1 (MQ=255)

                     gaCATAGCCCGGATGCGCGTCATGCACAACGCATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTg                                                                    >  2:9911576/1‑93 (MQ=255)

                       cctcgCCCGGATGCGCGTTGTCCCCGACGTATCGGTGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGa                                                                  <  1:708007/89‑1 (MQ=255)

                       cATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGa                                                                  >  2:1269501/1‑93 (MQ=255)

                       cATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGa                                                                  >  2:4731323/1‑93 (MQ=255)

                        aTAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGAt                                                                 <  2:7911824/93‑1 (MQ=255)

                         tAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATg                                                                >  1:2583735/1‑93 (MQ=255)

                           gCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGcc                                                              <  1:1463943/93‑1 (MQ=255)

                            cccGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCa                                                             <  1:8695425/93‑1 (MQ=255)

                             ccGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCAt                                                            <  2:8884821/93‑1 (MQ=255)

                             ccGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCAt                                                            <  1:7250787/93‑1 (MQ=255)

                              cGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATc                                                           <  1:3013342/93‑1 (MQ=255)

                               ggATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCg                                                          >  1:9681812/1‑93 (MQ=255)

                                gATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGt                                                         >  2:9425651/1‑93 (MQ=255)

                                 aTGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTc                                                        >  2:2726520/1‑93 (MQ=255)

                                  tGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCa                                                       <  2:6308112/93‑1 (MQ=255)

                                  tGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCa                                                       >  1:10032174/1‑93 (MQ=255)

                                   gcgcGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCAc                                                      >  2:8229181/1‑93 (MQ=255)

                                   gcgcGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCAc                                                      >  2:4306094/1‑93 (MQ=255)

                                        tCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTaaa                                                 <  1:5239400/93‑1 (MQ=255)

                                        tCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTaaa                                                 >  1:4142313/1‑93 (MQ=255)

                                          aTGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATc                                               <  1:2694261/93‑1 (MQ=255)

                                           tGCACAACGTTTTGCGGGGTAAAATCGTAGATGTTTTTCATCAGGCGCAACGCTACGCGCCACTGCATCTGGATGCCATCGGCACCTAAATCg                                              >  2:8940012/1‑93 (MQ=255)

                                           tGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCg                                              >  2:7756027/1‑93 (MQ=255)

                                           tGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCg                                              >  1:5293494/1‑93 (MQ=255)

                                           tGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCg                                              >  1:1297373/1‑93 (MQ=255)

                                            gCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGc                                             >  1:6329240/1‑93 (MQ=255)

                                              acaACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGccc                                           <  1:3748407/93‑1 (MQ=255)

                                               caACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCa                                          >  2:6654347/1‑93 (MQ=255)

                                                aaCGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAg                                         <  1:9244772/93‑1 (MQ=255)

                                                aaCGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAg                                         >  1:5215061/1‑93 (MQ=255)

                                                 aCGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAAACGCCCAGa                                        <  2:9329469/93‑1 (MQ=255)

                                                  cGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGAt                                       <  1:2865907/93‑1 (MQ=255)

                                                  cGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGAt                                       <  1:8186882/93‑1 (MQ=255)

                                                  cGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGAt                                       >  1:7780385/1‑93 (MQ=255)

                                                   gTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATg                                      >  1:3617503/1‑93 (MQ=255)

                                                   gTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATg                                      <  2:2869808/93‑1 (MQ=255)

                                                   gTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATg                                      >  2:2136045/1‑93 (MQ=255)

                                                    tATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGc                                     >  2:6139233/1‑93 (MQ=255)

                                                    tATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGc                                     >  2:39170/1‑93 (MQ=255)

                                                    tATTGCGGGGTAAAATCGGAGATGTTTTGCATCAGGCCCAACGCTTCGCGCCACTGCATCTGGATACCATCGTCACTTAAATCGCCCAGATGc                                     <  2:9704181/93‑1 (MQ=255)

                                                     aTTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCt                                    >  2:1769923/1‑93 (MQ=255)

                                                        gCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGAc                                 >  2:5001003/1‑93 (MQ=255)

                                                         cGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACt                                <  2:4611144/93‑1 (MQ=255)

                                                           gggTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCa                              >  2:6253792/1‑93 (MQ=255)

                                                           gggTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCa                              >  1:601543/1‑93 (MQ=255)

                                                           gggTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCa                              <  1:3856440/93‑1 (MQ=255)

                                                           gggTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCa                              >  2:2502764/1‑93 (MQ=255)

                                                             gTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAac                            >  1:1924377/1‑93 (MQ=255)

                                                              tAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAaca                           >  2:5562994/1‑93 (MQ=255)

                                                              tAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAaca                           >  1:3272121/1‑93 (MQ=255)

                                                              tAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAaca                           <  1:7559034/93‑1 (MQ=255)

                                                              tAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCACCGCTTAAATCGCCCAGATGCTGACTCGaca                           >  2:73168/1‑93 (MQ=255)

                                                               aaaaTCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAacac                          <  2:3504638/93‑1 (MQ=255)

                                                                aaaTCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACAcc                         <  2:9060732/93‑1 (MQ=255)

                                                                aaaTCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACAcc                         >  1:1643942/1‑93 (MQ=255)

                                                                aaaTCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACAcc                         >  2:1322734/1‑93 (MQ=255)

                                                                aaaTCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACAcc                         <  2:5546421/93‑1 (MQ=255)

                                                                 aaTCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCg                        >  2:7187614/1‑93 (MQ=255)

                                                                      tAGATGTTTTGCATCAGGCGCAACGCTTCGCGACACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGt                   >  2:8415991/1‑93 (MQ=255)

                                                                       aGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGtt                  <  1:6733301/93‑1 (MQ=255)

                                                                       aGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGtt                  >  2:7946920/1‑93 (MQ=255)

                                                                         aTGTTATGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGTATGCCATCGTCACTTAAAGCGCCCAGATGCTGACTCAACACCGCTTGTTCa                <  2:6550389/93‑1 (MQ=255)

                                                                          tGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCAc               <  1:2063600/93‑1 (MQ=255)

                                                                          tGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCAc               >  1:4856556/1‑93 (MQ=255)

                                                                            ttttGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACcg             >  2:3745826/1‑93 (MQ=255)

                                                                            ttttGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACcg             >  2:5821223/1‑93 (MQ=255)

                                                                             tttGCATCAGGCGCACCGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACcgc            <  1:6192343/93‑1 (MQ=255)

                                                                               tGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCgcgc          <  2:10000705/93‑1 (MQ=255)

                                                                                gCATCAGGCGCAACGCTTCGCTCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCa         >  1:1847298/1‑93 (MQ=255)

                                                                                 cATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCAc        <  2:851228/93‑1 (MQ=255)

                                                                                   tCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCa      >  2:4894667/1‑93 (MQ=255)

                                                                                   tCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCa      <  1:8461207/93‑1 (MQ=255)

                                                                                   tCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCa      >  1:6486438/1‑93 (MQ=255)

                                                                                    cAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAg     <  2:3281908/93‑1 (MQ=255)

                                                                                    cAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAg     >  2:4471336/1‑93 (MQ=255)

                                                                                     aGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAgg    <  2:3060604/93‑1 (MQ=255)

                                                                                      ggCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGc   <  2:1563299/93‑1 (MQ=255)

                                                                                      ggCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGAATCAACACCGCTTGTTCACCGCGCACCAGGc   >  1:6921087/1‑93 (MQ=255)

TTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCA  >  NC_000913/2834054‑2834233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGAAG  >  NC_000913/2834052‑2834237

ATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCA                                                                                              >  SRR4302540.8805712/1‑94 (MQ=60)

ATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCA                                                                                              >  SRR4302540.2213194/1‑94 (MQ=60)

 TTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAA                                                                                             <  SRR4302540.3027175/94‑1 (MQ=60)

 TTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAA                                                                                             <  SRR4302540.6778294/94‑1 (MQ=60)

  TTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAAC                                                                                            <  SRR4302540.9225710/94‑1 (MQ=60)

  TTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAAC                                                                                            <  SRR4302540.481157/94‑1 (MQ=60)

    CACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGC                                                                                          >  SRR4302540.3215733/1‑94 (MQ=60)

     ACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCT                                                                                         <  SRR4302540.1944516/94‑1 (MQ=60)

       GCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTC                                                                                       <  SRR4302540.9525495/94‑1 (MQ=60)

       GCGCCCACTGCCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTC                                                                                       <  SRR4302540.6749147/94‑1 (MQ=60)

        CGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCG                                                                                      >  SRR4302540.499861/1‑94 (MQ=60)

         GCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGC                                                                                     >  SRR4302540.5008766/1‑94 (MQ=60)

          CCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCG                                                                                    <  SRR4302540.4426201/94‑1 (MQ=60)

            CACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCC                                                                                  >  SRR4302540.4559618/1‑94 (MQ=60)

            CACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCC                                                                                  >  SRR4302540.8377649/1‑94 (MQ=60)

             ACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCA                                                                                 >  SRR4302540.3880702/1‑94 (MQ=60)

               ggggtgtcggcaatgcccggattcgcgtccttgccatgggATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACT                                                                               <  SRR4302540.5186407/54‑1 (MQ=60)

               TGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACT                                                                               >  SRR4302540.6346114/1‑94 (MQ=60)

               TGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACT                                                                               <  SRR4302540.5186406/94‑1 (MQ=60)

               TGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACT                                                                               >  SRR4302540.4352909/1‑94 (MQ=60)

                 GCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGC                                                                             >  SRR4302540.5015757/1‑94 (MQ=60)

                 GCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGC                                                                             >  SRR4302540.4688780/1‑94 (MQ=60)

                  CTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCA                                                                            >  SRR4302540.5466448/1‑94 (MQ=60)

                  CTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCA                                                                            >  SRR4302540.8159759/1‑94 (MQ=60)

                    GGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATC                                                                          >  SRR4302540.2040110/1‑94 (MQ=60)

                      AGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTG                                                                        <  SRR4302540.5135224/94‑1 (MQ=60)

                         cctcgcccggatgcgcgttgtccccgacgtatcggtGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGAT                                                                     <  SRR4302540.715620/58‑1 (MQ=60)

                         CATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGAT                                                                     <  SRR4302540.715325/94‑1 (MQ=60)

                         CATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGAT                                                                     <  SRR4302540.3421629/94‑1 (MQ=60)

                         CATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGAT                                                                     <  SRR4302540.8522980/94‑1 (MQ=60)

                         CATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGAT                                                                     <  SRR4302540.9908343/94‑1 (MQ=60)

                          ATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATG                                                                    >  SRR4302540.2611585/1‑94 (MQ=60)

                          ATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATG                                                                    <  SRR4302540.1747754/94‑1 (MQ=60)

                             GCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCA                                                                 >  SRR4302540.1815311/1‑94 (MQ=60)

                             GCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCA                                                                 <  SRR4302540.1479908/94‑1 (MQ=60)

                              CCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCAT                                                                <  SRR4302540.8796368/94‑1 (MQ=60)

                               CCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATC                                                               <  SRR4302540.5154307/94‑1 (MQ=60)

                               CCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATC                                                               <  SRR4302540.7331693/94‑1 (MQ=60)

                                CGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCG                                                              >  SRR4302540.9795723/1‑94 (MQ=60)

                                CGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCG                                                              >  SRR4302540.9010257/1‑94 (MQ=60)

                                CGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCG                                                              >  SRR4302540.5444136/1‑94 (MQ=60)

                                CGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCG                                                              <  SRR4302540.3046482/94‑1 (MQ=60)

                                 GGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGT                                                             >  SRR4302540.4324701/1‑94 (MQ=60)

                                   ATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCA                                                           >  SRR4302540.10148869/1‑94 (MQ=60)

                                      CGCGTCATGCTCAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTT                                                        >  SRR4302540.3120566/1‑94 (MQ=60)

                                      CGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTT                                                        >  SRR4302540.5292258/1‑94 (MQ=60)

                                      CGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTT                                                        >  SRR4302540.8721908/1‑94 (MQ=60)

                                      CGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTCCATCAGCCGCAACCGTTCGCGCCACTGCATCTGGATGCAATGGTCCCTT                                                        >  SRR4302540.8268342/1‑94 (MQ=60)

                                       GCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTA                                                       >  SRR4302540.5333976/1‑94 (MQ=60)

                                       GCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTA                                                       >  SRR4302540.8709866/1‑94 (MQ=60)

                                        CGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAA                                                      <  SRR4302540.3810814/94‑1 (MQ=60)

                                         GTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAA                                                     >  SRR4302540.4187132/1‑94 (MQ=60)

                                         GTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAA                                                     >  SRR4302540.3167504/1‑94 (MQ=60)

                                          TCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCTATCGTCACTTAAAT                                                    >  SRR4302540.2933716/1‑94 (MQ=60)

                                          TCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAAT                                                    <  SRR4302540.5296556/94‑1 (MQ=60)

                                          TCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAAT                                                    <  SRR4302540.1619174/94‑1 (MQ=60)

                                           CATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATC                                                   >  SRR4302540.302194/1‑94 (MQ=60)

                                            ATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCG                                                  >  SRR4302540.1310813/1‑94 (MQ=60)

                                            ATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCG                                                  <  SRR4302540.2723348/94‑1 (MQ=60)

                                            ATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCG                                                  >  SRR4302540.5351374/1‑94 (MQ=60)

                                             TGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGC                                                 >  SRR4302540.6399720/1‑94 (MQ=60)

                                              GCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCC                                                <  SRR4302540.3687076/94‑1 (MQ=60)

                                               CACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCC                                               <  SRR4302540.136219/94‑1 (MQ=60)

                                                ACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCA                                              >  SRR4302540.2237812/1‑94 (MQ=60)

                                                ACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCA                                              >  SRR4302540.3732479/1‑94 (MQ=60)

                                                ACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCA                                              <  SRR4302540.7473076/94‑1 (MQ=60)

                                                ACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCA                                              <  SRR4302540.3789305/94‑1 (MQ=60)

                                                ACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCA                                              <  SRR4302540.423043/94‑1 (MQ=60)

                                                 CAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAG                                             >  SRR4302540.5271897/1‑94 (MQ=60)

                                                 CAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAG                                             <  SRR4302540.9435314/94‑1 (MQ=60)

                                                  AACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGA                                            >  SRR4302540.5322772/1‑94 (MQ=60)

                                                  AACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGA                                            <  SRR4302540.9355476/94‑1 (MQ=60)

                                                   ACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGAT                                           <  SRR4302540.8159535/94‑1 (MQ=60)

                                                   ACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGAT                                           >  SRR4302540.7871337/1‑94 (MQ=60)

                                                   ACGTATTGCAGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGAT                                           <  SRR4302540.5123482/94‑1 (MQ=60)

                                                    CGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATG                                          >  SRR4302540.3657074/1‑94 (MQ=60)

                                                    CGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATG                                          <  SRR4302540.8281991/94‑1 (MQ=60)

                                                    CGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATG                                          <  SRR4302540.2897009/94‑1 (MQ=60)

                                                    CGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATG                                          <  SRR4302540.1196485/94‑1 (MQ=60)

                                                     GTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGC                                         <  SRR4302540.3404644/94‑1 (MQ=60)

                                                      TATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCT                                        >  SRR4302540.6409883/1‑94 (MQ=60)

                                                      TATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCATCACTTACATCGCCCAGATGCT                                        >  SRR4302540.2630854/1‑94 (MQ=60)

                                                         TGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGAC                                     <  SRR4302540.5835197/94‑1 (MQ=60)

                                                         TGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGAC                                     >  SRR4302540.5824756/1‑94 (MQ=60)

                                                           CGGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTC                                   <  SRR4302540.8269454/94‑1 (MQ=60)

                                                            GGGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCA                                  >  SRR4302540.607987/1‑94 (MQ=60)

                                                             GGGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAA                                 <  SRR4302540.3898367/94‑1 (MQ=60)

                                                              GGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAAC                                >  SRR4302540.6973204/1‑94 (MQ=60)

                                                              GGTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAAC                                >  SRR4302540.1945355/1‑94 (MQ=60)

                                                               GTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACC                               >  SRR4302540.3307836/1‑94 (MQ=60)

                                                               GTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACA                               >  SRR4302540.2786286/1‑94 (MQ=60)

                                                               GTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACA                               >  SRR4302540.3307837/1‑94 (MQ=60)

                                                               GTAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACA                               >  SRR4302540.8141673/1‑94 (MQ=60)

                                                                TAAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACAC                              <  SRR4302540.7643804/94‑1 (MQ=60)

                                                                 AAAATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACC                             >  SRR4302540.1661899/1‑94 (MQ=60)

                                                                   AATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGC                           <  SRR4302540.4869525/94‑1 (MQ=60)

                                                                   AATCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGC                           >  SRR4302540.4752026/1‑94 (MQ=60)

                                                                     TCGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTT                         <  SRR4302540.9589558/94‑1 (MQ=60)

                                                                      CGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTG                        <  SRR4302540.7835120/94‑1 (MQ=60)

                                                                      CGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTG                        <  SRR4302540.8206796/94‑1 (MQ=60)

                                                                      CGTAGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTG                        >  SRR4302540.4909702/1‑94 (MQ=60)

                                                                         AGATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTC                     <  SRR4302540.6807660/94‑1 (MQ=60)

                                                                          GATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCA                    <  SRR4302540.6269656/94‑1 (MQ=60)

                                                                          GATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCA                    <  SRR4302540.4863837/94‑1 (MQ=60)

                                                                           ATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCAC                   <  SRR4302540.1555499/94‑1 (MQ=60)

                                                                           ATGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCAC                   >  SRR4302540.4908618/1‑94 (MQ=60)

                                                                            TGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACC                  <  SRR4302540.4098188/94‑1 (MQ=60)

                                                                            TGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACC                  <  SRR4302540.2085805/94‑1 (MQ=60)

                                                                            TGTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACC                  >  SRR4302540.618941/1‑94 (MQ=60)

                                                                             GTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCG                 >  SRR4302540.7465723/1‑94 (MQ=60)

                                                                             GTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCG                 >  SRR4302540.6145874/1‑94 (MQ=60)

                                                                             GTTTTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCG                 >  SRR4302540.7329798/1‑94 (MQ=60)

                                                                               TTTGCATCAGGCGCACCGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCG               <  SRR4302540.6261293/94‑1 (MQ=60)

                                                                                TTGCATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGC              >  SRR4302540.6844891/1‑94 (MQ=60)

                                                                                 TGCATCAGGCGCAACGCTTCGCTCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCA             >  SRR4302540.1867553/1‑94 (MQ=60)

                                                                                   CATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACC           <  SRR4302540.7107297/94‑1 (MQ=60)

                                                                                   CATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACC           >  SRR4302540.1872535/1‑94 (MQ=60)

                                                                                    ATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCA          >  SRR4302540.10078230/1‑94 (MQ=60)

                                                                                    ATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCA          <  SRR4302540.1459490/94‑1 (MQ=60)

                                                                                    ATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCA          >  SRR4302540.7208073/1‑94 (MQ=60)

                                                                                    ATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCA          >  SRR4302540.286971/1‑94 (MQ=60)

                                                                                    ATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCA          >  SRR4302540.6558577/1‑94 (MQ=60)

                                                                                    ATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCA          >  SRR4302540.6558576/1‑94 (MQ=60)

                                                                                    ATCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCCCGCACCA          >  SRR4302540.3938427/1‑94 (MQ=60)

                                                                                     TCAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAG         <  SRR4302540.8559449/94‑1 (MQ=60)

                                                                                      CAGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGG        <  SRR4302540.2574081/94‑1 (MQ=60)

                                                                                       AGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGC       >  SRR4302540.540579/1‑94 (MQ=60)

                                                                                       AGGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGAATCAACACCGCTTGTTCACCGCGCACCAGGC       >  SRR4302540.6998102/1‑94 (MQ=60)

                                                                                        GGCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCA      >  SRR4302540.2661617/1‑94 (MQ=60)

                                                                                         GCGCAGCGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAG     <  SRR4302540.1764685/94‑1 (MQ=60)

                                                                                         GCGCAGCGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAG     <  SRR4302540.4199027/94‑1 (MQ=60)

                                                                                         GCGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAG     <  SRR4302540.9738829/94‑1 (MQ=60)

                                                                                          CGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGA    >  SRR4302540.7694304/1‑94 (MQ=60)

                                                                                          CGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGA    <  SRR4302540.9205822/94‑1 (MQ=60)

                                                                                          CGCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGA    <  SRR4302540.6267067/94‑1 (MQ=60)

                                                                                           GCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGAA   >  SRR4302540.1707729/1‑94 (MQ=60)

                                                                                           GCAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGAA   >  SRR4302540.2979773/1‑94 (MQ=60)

                                                                                            CAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGAAG  <  SRR4302540.1048771/94‑1 (MQ=60)

                                                                                            CAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGAAG  <  SRR4302540.684188/94‑1 (MQ=60)

                                                                                            CAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGAAG  <  SRR4302540.987288/94‑1 (MQ=60)

ATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGAAG  >  NC_000913/2834052‑2834237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`