Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,840,573	T→C	intergenic (+136/+23)	ascB → / ← hycI	6‑phospho‑beta‑glucosidase/HycI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,840,573	0	T	C	100.0%	718.5 / NA	222	intergenic (+136/+23)	ascB/hycI	6‑phospho‑beta‑glucosidase/HycI
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (113/109); total (113/109)

Only 100 of 230 total aligned reads displayed.

CGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGATAA  >  NC_000913/2840484‑2840662

cGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTc                                                                                        >  1:6036913/1‑93 (MQ=255)

cGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTc                                                                                        >  2:2260601/1‑93 (MQ=255)

   aCGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTg                                                                                     >  1:3727275/1‑93 (MQ=255)

   aCGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTg                                                                                     >  2:4938881/1‑93 (MQ=255)

     gAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGAt                                                                                   >  2:3106936/1‑93 (MQ=255)

     gAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGAt                                                                                   <  1:4187881/93‑1 (MQ=255)

       aCCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTc                                                                                 >  1:4275167/1‑93 (MQ=255)

       aCCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTc                                                                                 >  1:2064353/1‑93 (MQ=255)

        ccATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTcc                                                                                <  2:4715701/93‑1 (MQ=255)

        ccATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTcc                                                                                >  2:5989876/1‑93 (MQ=255)

        ccATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTcc                                                                                >  2:2176454/1‑93 (MQ=255)

         cATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCt                                                                               <  1:5564713/93‑1 (MQ=255)

          aTGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCtt                                                                              <  1:1088593/93‑1 (MQ=255)

          aTGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCtt                                                                              >  1:624603/1‑93 (MQ=255)

              aGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATg                                                                          >  1:1860838/1‑93 (MQ=255)

              aGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATg                                                                          <  2:5926388/93‑1 (MQ=255)

                gCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGaa                                                                        <  2:1762317/93‑1 (MQ=255)

                 cccGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGaaa                                                                       >  1:4416506/1‑93 (MQ=255)

                   cGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGaaaaa                                                                     >  1:568798/1‑93 (MQ=255)

                    gATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAac                                                                    >  2:4033731/1‑93 (MQ=255)

                    gATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAac                                                                    >  2:4109206/1‑93 (MQ=255)

                    gATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAac                                                                    >  1:3844438/1‑93 (MQ=255)

                      tAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAacta                                                                  <  1:5233032/93‑1 (MQ=255)

                      tAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAacta                                                                  <  1:1397575/93‑1 (MQ=255)

                       aaGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAactac                                                                 >  1:134016/1‑93 (MQ=255)

                       aaGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAactac                                                                 <  2:4123955/93‑1 (MQ=255)

                        agcgcagcgcATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAactact                                                                <  2:5216619/93‑1 (MQ=255)

                          cgcagcgcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTActct                                                              <  1:1275978/93‑1 (MQ=255)

                           gcagcgcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACtctt                                                             >  1:4825670/1‑93 (MQ=255)

                           gcagcgcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACtctt                                                             >  1:3508756/1‑93 (MQ=255)

                            cagcgcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACtcttc                                                            <  2:3208244/93‑1 (MQ=255)

                             agcgcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACtcttct                                                           <  2:911227/93‑1 (MQ=255)

                             agcgcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACtcttct                                                           >  1:2807786/1‑93 (MQ=255)

                               cgcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCttcttc                                                         <  2:5324951/93‑1 (MQ=255)

                               cgcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCttcttc                                                         <  2:1819860/93‑1 (MQ=255)

                               cgcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCttcttc                                                         <  1:2975508/93‑1 (MQ=255)

                                gcaTCAGCCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTcc                                                        <  2:4589712/93‑1 (MQ=255)

                                  aTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCAc                                                      >  1:5810073/1‑93 (MQ=255)

                                    cGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCg                                                    >  2:3890595/1‑93 (MQ=255)

                                    cGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCg                                                    <  1:3429174/93‑1 (MQ=255)

                                        cAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTaa                                                >  1:4381936/1‑93 (MQ=255)

                                        cAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTaa                                                <  2:1412974/93‑1 (MQ=255)

                                         aaTTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAATATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAAc                                               >  1:3385088/1‑93 (MQ=255)

                                         aaTTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAAc                                               <  1:973117/93‑1 (MQ=255)

                                         aaTTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAAc                                               >  1:2478296/1‑93 (MQ=255)

                                         aaTTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAAc                                               >  2:4269085/1‑93 (MQ=255)

                                         aaTTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAAc                                               <  1:1019567/93‑1 (MQ=255)

                                         aaTTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAAc                                               <  1:3601569/93‑1 (MQ=255)

                                          aTTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACt                                              >  2:5610099/1‑93 (MQ=255)

                                           tttAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTg                                             <  2:629664/93‑1 (MQ=255)

                                           tttAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTg                                             >  2:5495508/1‑93 (MQ=255)

                                            ttAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTgc                                            <  2:5551279/93‑1 (MQ=255)

                                            ttAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTgc                                            <  1:1765215/93‑1 (MQ=255)

                                             tAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTgcg                                           <  2:2589990/93‑1 (MQ=255)

                                              aGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTgcgc                                          >  1:2732154/1‑93 (MQ=255)

                                                 aTTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGac                                       >  1:790280/1‑92 (MQ=255)

                                                  tttGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAg                                      >  1:1640602/1‑93 (MQ=255)

                                                  tttGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAg                                      >  1:1213277/1‑93 (MQ=255)

                                                    tGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAgcc                                    >  1:4550557/1‑93 (MQ=255)

                                                        aTCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCa                                <  2:2064559/93‑1 (MQ=255)

                                                        aTCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCa                                >  2:1159392/1‑93 (MQ=255)

                                                         tCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGGCGCCAt                               >  2:2715615/1‑93 (MQ=255)

                                                         tCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCAt                               >  2:2373674/1‑93 (MQ=255)

                                                         tCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCAt                               <  2:2900335/93‑1 (MQ=255)

                                                          cAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCAtt                              <  1:2275513/93‑1 (MQ=255)

                                                          cAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCAtt                              <  1:6090331/93‑1 (MQ=255)

                                                           agagCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCAttt                             >  2:5340638/1‑93 (MQ=255)

                                                           agagCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCAttt                             >  2:6035112/1‑93 (MQ=255)

                                                           agagCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCAttt                             <  1:4200658/93‑1 (MQ=255)

                                                           agagCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCAttt                             <  1:3231360/93‑1 (MQ=255)

                                                           agagCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCAttt                             >  1:5892295/1‑93 (MQ=255)

                                                           agagCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCAttt                             >  1:867547/1‑93 (MQ=255)

                                                            gagCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATttc                            >  2:5803669/1‑93 (MQ=255)

                                                            gagCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATttc                            >  1:1662816/1‑93 (MQ=255)

                                                             agCTGGTGCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATttcc                           <  1:3312909/93‑1 (MQ=255)

                                                              gCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATttcct                          <  2:2450147/93‑1 (MQ=255)

                                                               cTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATttcctt                         <  1:2514354/93‑1 (MQ=255)

                                                                tGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATttccttc                        <  1:2120232/93‑1 (MQ=255)

                                                                 ggTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATttccttcc                       <  2:2687971/93‑1 (MQ=255)

                                                                   ttCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCa                     <  1:2164874/93‑1 (MQ=255)

                                                                     cACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGc                   >  1:4156628/1‑93 (MQ=255)

                                                                      aCCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGcc                  >  2:3295819/1‑93 (MQ=255)

                                                                       ccccATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCt                 <  2:2751607/93‑1 (MQ=255)

                                                                        cccATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCtt                <  2:5857093/93‑1 (MQ=255)

                                                                         ccATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTc               >  2:3534142/1‑93 (MQ=255)

                                                                         ccATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTc               >  2:2955483/1‑93 (MQ=255)

                                                                         ccATAAAGAACATCCCCGTCCTGATTCCTTAATGAAACACTGCTCTTCTTCCCCCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTc               <  2:1401186/93‑1 (MQ=255)

                                                                          cATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTcc              <  1:3085088/93‑1 (MQ=255)

                                                                          cATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTcc              <  2:3767463/93‑1 (MQ=255)

                                                                           aTCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCa             <  2:4190863/93‑1 (MQ=255)

                                                                           aTCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCa             <  1:4052278/93‑1 (MQ=255)

                                                                           aTCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCa             >  2:839760/1‑93 (MQ=255)

                                                                            tCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAg            <  2:5278635/93‑1 (MQ=255)

                                                                              aaGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTc          >  1:2367970/1‑93 (MQ=255)

                                                                               aGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCg         >  1:4762902/1‑93 (MQ=255)

                                                                                aaaCATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGt        <  2:4904590/92‑1 (MQ=255)

                                                                                   cATCCCCGTCCTGATTCCTTAATGAAAATCTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGa     <  2:455461/93‑1 (MQ=255)

                                                                                    aTCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGAt    >  2:5068465/1‑93 (MQ=255)

                                                                                     tCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGATa   <  1:2701618/93‑1 (MQ=255)

                                                                                      ccccGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGATaa  >  2:3715861/1‑93 (MQ=255)

CGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGATAA  >  NC_000913/2840484‑2840662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGATAAACG  >  NC_000913/2840480‑2840665

ATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCC                                                                                              <  SRR4302533.965488/94‑1 (MQ=60)

ATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCC                                                                                              <  SRR4302533.64953/94‑1 (MQ=60)

ATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCC                                                                                              <  SRR4302533.1734748/94‑1 (MQ=60)

ATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCC                                                                                              <  SRR4302533.1526754/94‑1 (MQ=60)

   TCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTC                                                                                           >  SRR4302533.6073495/1‑94 (MQ=60)

     GCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCT                                                                                         <  SRR4302533.4025225/94‑1 (MQ=60)

      CACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTG                                                                                        <  SRR4302533.3033314/94‑1 (MQ=60)

      CACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTG                                                                                        >  SRR4302533.3750139/1‑94 (MQ=60)

       ACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGA                                                                                       >  SRR4302533.3546951/1‑94 (MQ=60)

         GAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATT                                                                                     <  SRR4302533.4185767/94‑1 (MQ=60)

         GAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATT                                                                                     <  SRR4302533.4213241/94‑1 (MQ=60)

          AACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTC                                                                                    >  SRR4302533.4300885/1‑94 (MQ=60)

          AACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTC                                                                                    >  SRR4302533.2077077/1‑94 (MQ=60)

          AACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTC                                                                                    >  SRR4302533.1658794/1‑94 (MQ=60)

          AACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTC                                                                                    <  SRR4302533.6134230/94‑1 (MQ=60)

           ACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCC                                                                                   >  SRR4302533.3424410/1‑94 (MQ=60)

            CCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCT                                                                                  <  SRR4302533.1726838/94‑1 (MQ=60)

            CCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCT                                                                                  >  SRR4302533.5666089/1‑94 (MQ=60)

             CATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTT                                                                                 >  SRR4302533.628270/1‑94 (MQ=60)

             CATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTT                                                                                 <  SRR4302533.5598348/94‑1 (MQ=60)

              ATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTA                                                                                <  SRR4302533.1095005/94‑1 (MQ=60)

              ATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTA                                                                                <  SRR4302533.4574812/94‑1 (MQ=60)

              ATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTA                                                                                >  SRR4302533.5015581/1‑94 (MQ=60)

                 AAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATG                                                                             >  SRR4302533.1872185/1‑94 (MQ=60)

                  AGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGA                                                                            <  SRR4302533.2820222/94‑1 (MQ=60)

                    GCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAA                                                                          >  SRR4302533.4443208/1‑94 (MQ=60)

                    GCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAA                                                                          >  SRR4302533.960446/1‑94 (MQ=60)

                      CCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAA                                                                        >  SRR4302533.572161/1‑94 (MQ=60)

                      CCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAA                                                                        >  SRR4302533.1280496/1‑94 (MQ=60)

                      CCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAA                                                                        >  SRR4302533.915053/1‑94 (MQ=60)

                       CGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAAC                                                                       >  SRR4302533.3867917/1‑94 (MQ=60)

                          TAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTAC                                                                    <  SRR4302533.5264504/94‑1 (MQ=60)

                          TAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTAC                                                                    >  SRR4302533.134864/1‑94 (MQ=60)

                          TAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTAC                                                                    <  SRR4302533.1405998/94‑1 (MQ=60)

                           AAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACT                                                                   <  SRR4302533.5769859/94‑1 (MQ=60)

                           AAGCGCAGCGCATCGGGCAATTTAGCATTTGGCAGCAGAGCTGGTTCACCCCATCAAGAACAGCCCCGTCCTGATTCCTTAATGAAAAACTACT                                                                   <  SRR4302533.1917915/94‑1 (MQ=60)

                              CGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTT                                                                <  SRR4302533.2475471/94‑1 (MQ=60)

                              CGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTT                                                                >  SRR4302533.3530389/1‑94 (MQ=60)

                              CGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTT                                                                <  SRR4302533.1283649/94‑1 (MQ=60)

                              CGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTT                                                                >  SRR4302533.4854913/1‑94 (MQ=60)

                               GCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTC                                                               <  SRR4302533.2938125/94‑1 (MQ=60)

                               GCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTC                                                               <  SRR4302533.3143772/94‑1 (MQ=60)

                                CAGCGTATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCT                                                              <  SRR4302533.2743967/94‑1 (MQ=60)

                                CAGCGCATCGGGCAATTTAGCATTTGGCATCATAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCT                                                              <  SRR4302533.84856/94‑1 (MQ=60)

                                CAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCT                                                              <  SRR4302533.3280687/94‑1 (MQ=60)

                                CAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCT                                                              >  SRR4302533.2825066/1‑94 (MQ=60)

                                CAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCT                                                              <  SRR4302533.4300604/94‑1 (MQ=60)

                                CAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCT                                                              <  SRR4302533.2131701/94‑1 (MQ=60)

                                 AGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTT                                                             >  SRR4302533.1978076/1‑94 (MQ=60)

                                   CGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCC                                                           >  SRR4302533.2501150/1‑94 (MQ=60)

                                   CGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCC                                                           <  SRR4302533.2993714/94‑1 (MQ=60)

                                   CGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCC                                                           >  SRR4302533.4804883/1‑94 (MQ=60)

                                    GCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTACTTAATGAACAACTACTCTTCTTCCA                                                          >  SRR4302533.2371669/1‑94 (MQ=60)

                                     CATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCAC                                                         >  SRR4302533.5845160/1‑94 (MQ=60)

                                      ATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACC                                                        <  SRR4302533.3500046/94‑1 (MQ=60)

                                      ATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACC                                                        >  SRR4302533.2581912/1‑94 (MQ=60)

                                        CGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGC                                                      <  SRR4302533.3450359/94‑1 (MQ=60)

                                         GGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCT                                                     >  SRR4302533.2195029/1‑94 (MQ=60)

                                          GGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTA                                                    >  SRR4302533.4217725/1‑94 (MQ=60)

                                           GCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAA                                                   >  SRR4302533.1188692/1‑94 (MQ=60)

                                           GCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAA                                                   >  SRR4302533.4408393/1‑94 (MQ=60)

                                            CAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAATATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAAC                                                  >  SRR4302533.3405987/1‑94 (MQ=60)

                                            CAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAAC                                                  >  SRR4302533.2493580/1‑94 (MQ=60)

                                             AATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACT                                                 <  SRR4302533.978830/94‑1 (MQ=60)

                                             AATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACT                                                 >  SRR4302533.338126/1‑94 (MQ=60)

                                             AATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACT                                                 <  SRR4302533.1025559/94‑1 (MQ=60)

                                             AATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACT                                                 <  SRR4302533.3623732/94‑1 (MQ=60)

                                             AATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACT                                                 <  SRR4302533.3623733/94‑1 (MQ=60)

                                               TTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGC                                               >  SRR4302533.109513/1‑94 (MQ=60)

                                                TTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCG                                              <  SRR4302533.1775965/94‑1 (MQ=60)

                                                 TAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGC                                             >  SRR4302533.2748919/1‑94 (MQ=60)

                                                   GCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGA                                           >  SRR4302533.2147464/1‑94 (MQ=60)

                                                    CATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAC                                          >  SRR4302533.794933/1‑94 (MQ=60)

                                                     ATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAG                                         >  SRR4302533.1220570/1‑94 (MQ=60)

                                                     ATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAG                                         >  SRR4302533.1650542/1‑94 (MQ=60)

                                                       TTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCC                                       >  SRR4302533.4578152/1‑94 (MQ=60)

                                                         GGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGAGAAGCCGC                                     >  SRR4302533.2839359/1‑94 (MQ=60)

                                                            ATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCAT                                  <  SRR4302533.4865956/94‑1 (MQ=60)

                                                            ATCAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCAT                                  <  SRR4302533.1669030/94‑1 (MQ=60)

                                                              CAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTT                                <  SRR4302533.2289602/94‑1 (MQ=60)

                                                              CAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTT                                >  SRR4302533.5927885/1‑94 (MQ=60)

                                                              CAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTT                                <  SRR4302533.6127141/94‑1 (MQ=60)

                                                              CAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTT                                >  SRR4302533.4025305/1‑94 (MQ=60)

                                                              CAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTT                                >  SRR4302533.872630/1‑94 (MQ=60)

                                                              CAGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTT                                >  SRR4302533.3570320/1‑94 (MQ=60)

                                                               AGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTC                               <  SRR4302533.4226077/94‑1 (MQ=60)

                                                               AGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTC                               >  SRR4302533.6077224/1‑94 (MQ=60)

                                                               AGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTC                               >  SRR4302533.1672867/1‑94 (MQ=60)

                                                               AGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTC                               <  SRR4302533.1340736/94‑1 (MQ=60)

                                                               AGAGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTC                               <  SRR4302533.3251278/94‑1 (MQ=60)

                                                                 AGCTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCT                             <  SRR4302533.3366653/94‑1 (MQ=60)

                                                                 AGCTGGTGCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCT                             <  SRR4302533.3333364/94‑1 (MQ=60)

                                                                   CTGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTC                           <  SRR4302533.2529846/94‑1 (MQ=60)

                                                                    TGGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCC                          <  SRR4302533.2133307/94‑1 (MQ=60)

                                                                     GGTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCC                         <  SRR4302533.6288022/94‑1 (MQ=60)

                                                                      GTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAATCTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCA                        <  SRR4302533.269402/94‑1 (MQ=60)

                                                                      GTTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCA                        <  SRR4302533.4127598/94‑1 (MQ=60)

                                                                       TTCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAG                       <  SRR4302533.2178191/94‑1 (MQ=60)

                                                                        TCACCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGC                      >  SRR4302533.4181812/1‑94 (MQ=60)

                                                                           CCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAACCTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTT                   <  SRR4302533.5455332/94‑1 (MQ=60)

                                                                           CCCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTT                   <  SRR4302533.1335308/94‑1 (MQ=60)

                                                                            CCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTC                  >  SRR4302533.4330405/1‑94 (MQ=60)

                                                                            CCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTC                  >  SRR4302533.6142868/1‑94 (MQ=60)

                                                                            CCCATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTC                  >  SRR4302533.5921950/1‑94 (MQ=60)

                                                                              CATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCA                <  SRR4302533.3104057/94‑1 (MQ=60)

                                                                               ATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAACCTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAG               <  SRR4302533.4282910/94‑1 (MQ=60)

                                                                               ATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAG               <  SRR4302533.5864690/94‑1 (MQ=60)

                                                                               ATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAG               <  SRR4302533.4076956/94‑1 (MQ=60)

                                                                               ATCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAG               <  SRR4302533.4426929/94‑1 (MQ=60)

                                                                                TCAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGT              <  SRR4302533.1838675/94‑1 (MQ=60)

                                                                                 CAAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTC             >  SRR4302533.2382621/1‑94 (MQ=60)

                                                                                  AAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCG            >  SRR4302533.4791788/1‑94 (MQ=60)

                                                                                  AAGAACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCG            <  SRR4302533.4451191/94‑1 (MQ=60)

                                                                                      ACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCTGTCGTTGA        <  SRR4302533.2366139/94‑1 (MQ=60)

                                                                                      ACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGA        <  SRR4302533.4747989/94‑1 (MQ=60)

                                                                                      ACATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGA        >  SRR4302533.1386927/1‑94 (MQ=60)

                                                                                       CATCCCCGCCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGAT       <  SRR4302533.6002644/94‑1 (MQ=60)

                                                                                       CAGCCCGGTCCTGATTCCGTAATGAAAAACTACGCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGAT       <  SRR4302533.1464678/94‑1 (MQ=60)

                                                                                        ATCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGATA      >  SRR4302533.3775070/1‑94 (MQ=60)

                                                                                         TCCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGATAA     <  SRR4302533.2718192/94‑1 (MQ=60)

                                                                                          CCCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGATAAA    >  SRR4302533.2646542/1‑94 (MQ=60)

                                                                                           CCCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGATAAAC   <  SRR4302533.6317395/94‑1 (MQ=60)

                                                                                            CCGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGATAAACG  >  SRR4302533.5941019/1‑94 (MQ=60)

ATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTCCTTAATGAAAAACTACTCTTCTTCCACCGCTAACTGCGCGAAGCCGCCATTTCCTTCCCAGCCTTCCAGTCGTTGATAAACG  >  NC_000913/2840480‑2840665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`