Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,869,949	T→C	T189A (ACC→GCC)	ygbP ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,869,949	0	T	C	100.0%	798.0 / NA	246	T189A (ACC→GCC)	ygbP	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (121/125); total (121/125)

Only 100 of 254 total aligned reads displayed.

TTCCGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGTAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAAGC  >  NC_000913/2869860‑2870038

ttCCGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAAt                                                                                        >  2:6281517/1‑93 (MQ=255)

   cGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGATTCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGt                                                                                     <  2:2751690/93‑1 (MQ=255)

   cGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGt                                                                                     <  1:1229763/93‑1 (MQ=255)

   cGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGt                                                                                     <  1:1604933/93‑1 (MQ=255)

    gggCGCGTGACTTTAATGTTATCCGCCCGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCGGAGGCTTCGTCGGCAATAGTc                                                                                    <  1:4919416/93‑1 (MQ=255)

     ggCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTcg                                                                                   <  1:598671/93‑1 (MQ=255)

      gcgcGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTcgc                                                                                  <  2:5662039/93‑1 (MQ=255)

      gcgcGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACGGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTcgc                                                                                  <  2:1222321/93‑1 (MQ=255)

        gcgTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCgcgc                                                                                <  1:894204/93‑1 (MQ=255)

         cgTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGcc                                                                               <  1:1472802/93‑1 (MQ=255)

         cgTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATACGCAATATTACAGCGCCGAGGCTTCGTCGGCAATAGGCGCGcc                                                                               >  1:1050807/1‑93 (MQ=255)

          ttGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCt                                                                              >  1:5220943/2‑93 (MQ=255)

          gTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCt                                                                              >  1:399344/1‑93 (MQ=255)

          gTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCt                                                                              <  2:4646665/93‑1 (MQ=255)

           tGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTcg                                                                                   <  1:916508/87‑1 (MQ=255)

           tGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCtt                                                                             >  2:6298513/1‑93 (MQ=255)

            gACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTc                                                                            >  2:2659168/1‑93 (MQ=255)

              cTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCAt                                                                          >  1:1724619/1‑93 (MQ=255)

              cTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCAt                                                                          >  2:3702150/1‑93 (MQ=255)

              cTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCAt                                                                          >  1:4108427/1‑93 (MQ=255)

              cTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCAt                                                                          <  1:2746677/93‑1 (MQ=255)

               tttAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGGATCCGCAATATTCCAGCGCCGTGGCTTCGTCGGAAATAGTCGCGGCTTCGtt                                                                         >  2:3189625/1‑93 (MQ=255)

               tttAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCAtt                                                                         >  1:5523167/1‑93 (MQ=255)

               tttAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCAtt                                                                         >  2:2011417/1‑93 (MQ=255)

               tttAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCAtt                                                                         >  1:4400439/1‑93 (MQ=255)

               tttAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCAtt                                                                         >  1:1902592/1‑93 (MQ=255)

                 tAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTa                                                                       >  1:5387386/1‑93 (MQ=255)

                 tAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTa                                                                       >  2:5360053/1‑93 (MQ=255)

                  taTGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTag                                                                      <  1:447222/92‑1 (MQ=255)

                    tGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTagag                                                                    <  1:198459/93‑1 (MQ=255)

                     gTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAgc                                                                   <  2:2164920/93‑1 (MQ=255)

                      ttATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAgcg                                                                  <  2:2964024/93‑1 (MQ=255)

                      ttATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAgcg                                                                  >  1:2350022/1‑93 (MQ=255)

                         tCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAgcgcgc                                                               >  1:6129023/1‑93 (MQ=255)

                            gCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTc                                                            <  1:4946204/93‑1 (MQ=255)

                             cACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCa                                                           >  1:3396657/1‑93 (MQ=255)

                                 gCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACa                                                       <  2:5463818/93‑1 (MQ=255)

                                 gCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACa                                                       >  2:407505/1‑93 (MQ=255)

                                 gCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACa                                                       <  1:2850583/93‑1 (MQ=255)

                                 gCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACa                                                       >  2:3280365/1‑93 (MQ=255)

                                    ttCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGTCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTc                                                    <  1:1949944/93‑1 (MQ=255)

                                     tCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCa                                                   >  2:5834673/1‑93 (MQ=255)

                                        aCCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGt                                                >  2:87912/1‑93 (MQ=255)

                                          cAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTaa                                              >  1:3174084/1‑93 (MQ=255)

                                           aaCTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAAc                                             <  2:4816704/93‑1 (MQ=255)

                                           aaCTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAAc                                             >  1:2810107/1‑93 (MQ=255)

                                           aaCTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAAc                                             >  2:1649346/1‑93 (MQ=255)

                                           aaCTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGCCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAAc                                             >  1:5826150/1‑93 (MQ=255)

                                            aCTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACa                                            >  1:3110440/1‑93 (MQ=255)

                                              tGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGc                                          >  2:4638277/1‑93 (MQ=255)

                                              tGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGc                                          >  2:3658575/1‑93 (MQ=255)

                                              tGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGc                                          >  2:1331146/1‑93 (MQ=255)

                                               gAGGATGAAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCt                                         <  2:4473854/93‑1 (MQ=255)

                                                  gATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCAc                                      <  1:2521476/93‑1 (MQ=255)

                                                  gATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCAc                                      >  1:4627917/1‑93 (MQ=255)

                                                    tGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGa                                    <  1:5159047/93‑1 (MQ=255)

                                                    tGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGa                                    <  1:2904574/93‑1 (MQ=255)

                                                     ggAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAg                                   >  2:2401463/1‑93 (MQ=255)

                                                     ggAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAg                                   <  1:2932070/93‑1 (MQ=255)

                                                       aaTCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAggg                                 <  2:3078331/93‑1 (MQ=255)

                                                        aTCTGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAATCGCGCCTTCATTTAGAGCGCGCGTCAGCCAGTCATGTAACAGCTCACGAGGGa                                >  2:605962/1‑93 (MQ=255)

                                                        aTCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGa                                <  1:4705195/93‑1 (MQ=255)

                                                        aTCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGa                                <  2:5225252/93‑1 (MQ=255)

                                                          ccGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGaaa                              >  2:2479647/1‑93 (MQ=255)

                                                            gCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGaaaaa                            >  1:575123/1‑93 (MQ=255)

                                                                tatTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTgc                        >  1:1892071/1‑93 (MQ=255)

                                                                tatTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTgc                        <  1:4026868/93‑1 (MQ=255)

                                                                 atTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTgcg                       <  1:3628797/93‑1 (MQ=255)

                                                                 atTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTgcg                       >  2:1520300/1‑93 (MQ=255)

                                                                 atTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTgcg                       <  1:4168991/93‑1 (MQ=255)

                                                                  ttCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTgcgg                      >  1:5930922/1‑93 (MQ=255)

                                                                   tCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTgcggc                     <  2:2325180/93‑1 (MQ=255)

                                                                   tCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTgcggc                     <  2:3561592/93‑1 (MQ=255)

                                                                    ccAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTgcggcg                    >  2:2219238/1‑93 (MQ=255)

                                                                     cAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGt                   >  1:6214396/1‑93 (MQ=255)

                                                                       gcgcCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCa                 <  2:2548575/93‑1 (MQ=255)

                                                                       gcgcCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCa                 <  2:332397/93‑1 (MQ=255)

                                                                       gcgcCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCa                 <  1:2615843/93‑1 (MQ=255)

                                                                       gcgcCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCa                 >  1:637624/1‑93 (MQ=255)

                                                                        cgcCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAg                <  1:1777244/93‑1 (MQ=255)

                                                                        cgcCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAg                <  2:3969442/93‑1 (MQ=255)

                                                                          ccGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAgcg              <  2:5711178/93‑1 (MQ=255)

                                                                           cGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAgcgc             <  1:5641236/93‑1 (MQ=255)

                                                                            gAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGGGGCGTCAGcgcg            >  1:231485/1‑93 (MQ=255)

                                                                            gAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGcgcg            >  2:380554/1‑93 (MQ=255)

                                                                              ggCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTg          >  1:546712/1‑93 (MQ=255)

                                                                              ggCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTg          >  2:3509196/1‑93 (MQ=255)

                                                                              ggCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGAGTCAGACAGTCATGTAACAGCTCACGAGGGGAAAATTGCGGCGTCAGCGCGTg          >  1:2828075/1‑93 (MQ=255)

                                                                                cTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGcc        >  1:2200490/1‑93 (MQ=255)

                                                                                cTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGcc        >  2:502623/1‑93 (MQ=255)

                                                                                 ttCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCa       <  1:3891679/93‑1 (MQ=255)

                                                                                  tcgtcgGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCAt      <  2:3855257/93‑1 (MQ=255)

                                                                                  tcgtcgGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCAt      >  2:5261917/1‑93 (MQ=255)

                                                                                   cgtcgGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATa     <  2:2388127/93‑1 (MQ=255)

                                                                                   cgtcgGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATa     >  2:4971822/1‑93 (MQ=255)

                                                                                    gtcgGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATaa    <  2:43572/93‑1 (MQ=255)

                                                                                    gtcgGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATaa    <  2:1102512/93‑1 (MQ=255)

                                                                                     tcgGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAAg   <  1:2480144/93‑1 (MQ=255)

                                                                                     tcgGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAAg   >  1:2701084/1‑93 (MQ=255)

                                                                                      cgGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAAGc  <  1:771090/93‑1 (MQ=255)

TTCCGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGTAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAAGC  >  NC_000913/2869860‑2870038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AATCTTCCGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGTAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAAGCCGTT  >  NC_000913/2869856‑2870042

AATCTTCCGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGC                                                                                               <  SRR4302533.6002697/94‑1 (MQ=60)

    TTCCGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATA                                                                                           >  SRR4302533.2979517/1‑94 (MQ=60)

     TCCGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAG                                                                                          <  SRR4302533.1590249/94‑1 (MQ=60)

     TCCGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAG                                                                                          <  SRR4302533.1659307/94‑1 (MQ=60)

     TCCGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAG                                                                                          <  SRR4302533.4051316/94‑1 (MQ=60)

       CGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTC                                                                                        <  SRR4302533.1237125/94‑1 (MQ=60)

       CGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTC                                                                                        <  SRR4302533.1614646/94‑1 (MQ=60)

       CGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTC                                                                                        <  SRR4302533.2478812/94‑1 (MQ=60)

        GGGCGCGTGACTTTAATGTTATCCGCCCGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCGGAGGCTTCGTCGGCAATAGTCG                                                                                       <  SRR4302533.4949217/94‑1 (MQ=60)

        GGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCG                                                                                       >  SRR4302533.1387280/1‑94 (MQ=60)

        GGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCG                                                                                       >  SRR4302533.1963160/1‑94 (MQ=60)

         tgtatGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGC                                                                                      <  SRR4302533.921893/89‑1 (MQ=60)

         GGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGC                                                                                      <  SRR4302533.602196/94‑1 (MQ=60)

         GGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGC                                                                                      <  SRR4302533.5686528/94‑1 (MQ=60)

          GCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATCTTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCG                                                                                     <  SRR4302533.6178950/94‑1 (MQ=60)

          GCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCG                                                                                     <  SRR4302533.578946/94‑1 (MQ=60)

          GCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCG                                                                                     <  SRR4302533.2781748/94‑1 (MQ=60)

            GCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCC                                                                                   <  SRR4302533.899459/94‑1 (MQ=60)

            GCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATACGCAATATTACAGCGCCGAGGCTTCGTCGGCAATAGGCGCGCC                                                                                   >  SRR4302533.1056985/1‑94 (MQ=60)

             CTTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCT                                                                                  >  SRR4302533.5252362/1‑94 (MQ=60)

             CGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCT                                                                                  >  SRR4302533.2630232/1‑94 (MQ=60)

             CGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCT                                                                                  <  SRR4302533.1481702/94‑1 (MQ=60)

             CGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCT                                                                                  >  SRR4302533.401756/1‑94 (MQ=60)

             CGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCT                                                                                  >  SRR4302533.4871037/1‑94 (MQ=60)

              GTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTT                                                                                 <  SRR4302533.1780629/94‑1 (MQ=60)

              GTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTT                                                                                 >  SRR4302533.861473/1‑94 (MQ=60)

               TGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTC                                                                                <  SRR4302533.3556290/94‑1 (MQ=60)

               TGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTC                                                                                >  SRR4302533.2010720/1‑94 (MQ=60)

                GACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCA                                                                               >  SRR4302533.2347029/1‑94 (MQ=60)

                 ACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCAT                                                                              <  SRR4302533.523941/94‑1 (MQ=60)

                 ACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCAT                                                                              >  SRR4302533.327431/1‑94 (MQ=60)

                 ACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCAT                                                                              >  SRR4302533.1735083/1‑94 (MQ=60)

                 ACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCAT                                                                              >  SRR4302533.4133404/1‑94 (MQ=60)

                  CTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATT                                                                             >  SRR4302533.4427009/1‑94 (MQ=60)

                  CTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATT                                                                             <  SRR4302533.45038/94‑1 (MQ=60)

                  CTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATT                                                                             >  SRR4302533.5556514/1‑94 (MQ=60)

                  CTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATT                                                                             >  SRR4302533.1914204/1‑94 (MQ=60)

                  CTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATT                                                                             <  SRR4302533.2763517/94‑1 (MQ=60)

                   TTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTT                                                                            >  SRR4302533.693331/1‑94 (MQ=60)

                   TTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTT                                                                            >  SRR4302533.6006734/1‑94 (MQ=60)

                    TTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTA                                                                           >  SRR4302533.5983869/1‑94 (MQ=60)

                    TTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTA                                                                           >  SRR4302533.5419757/1‑94 (MQ=60)

                    TTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTA                                                                           >  SRR4302533.828060/1‑94 (MQ=60)

                     TAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAG                                                                          >  SRR4302533.1370729/1‑94 (MQ=60)

                      TATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGA                                                                         <  SRR4302533.449897/94‑1 (MQ=60)

                       ATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAG                                                                        <  SRR4302533.2680182/94‑1 (MQ=60)

                        TGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGC                                                                       <  SRR4302533.199713/94‑1 (MQ=60)

                        TGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGC                                                                       <  SRR4302533.1944093/94‑1 (MQ=60)

                         GTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCG                                                                      >  SRR4302533.2364558/1‑94 (MQ=60)

                         GTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCG                                                                      <  SRR4302533.4572302/94‑1 (MQ=60)

                         GTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCG                                                                      >  SRR4302533.1894295/1‑94 (MQ=60)

                           TATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCG                                                                    >  SRR4302533.1689808/1‑94 (MQ=60)

                           TATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCG                                                                    <  SRR4302533.2874335/94‑1 (MQ=60)

                            ATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGC                                                                   >  SRR4302533.6165957/1‑94 (MQ=60)

                            ATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGC                                                                   >  SRR4302533.1905420/1‑94 (MQ=60)

                              CCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGT                                                                 >  SRR4302533.4136740/1‑94 (MQ=60)

                                GCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCA                                                               <  SRR4302533.5197580/94‑1 (MQ=60)

                                GCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCA                                                               >  SRR4302533.3417632/1‑94 (MQ=60)

                                GCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCA                                                               <  SRR4302533.4976140/94‑1 (MQ=60)

                                    GGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCGGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACA                                                           >  SRR4302533.4457760/1‑94 (MQ=60)

                                     GCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAG                                                          <  SRR4302533.2868123/94‑1 (MQ=60)

                                       CTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTC                                                        >  SRR4302533.206890/1‑94 (MQ=60)

                                       CTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTC                                                        >  SRR4302533.6240645/1‑94 (MQ=60)

                                       CTGCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTC                                                        <  SRR4302533.2918601/94‑1 (MQ=60)

                                        TTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGTCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCA                                                       <  SRR4302533.1961828/94‑1 (MQ=60)

                                         TCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCAT                                                      <  SRR4302533.6262139/94‑1 (MQ=60)

                                         TCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCAT                                                      <  SRR4302533.187759/94‑1 (MQ=60)

                                          CGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATG                                                     >  SRR4302533.6294072/1‑94 (MQ=60)

                                           GACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGT                                                    <  SRR4302533.2508644/94‑1 (MQ=60)

                                             CCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAA                                                  >  SRR4302533.3193618/1‑94 (MQ=60)

                                             CCAACTGAGGATGGAATCAGCAATATTCCAGAGCCGAGGCTTCGTCGGCAATAGTCGAGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAA                                                  >  SRR4302533.470408/1‑94 (MQ=60)

                                              CAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAAC                                                 <  SRR4302533.5642017/94‑1 (MQ=60)

                                              CAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAAC                                                 >  SRR4302533.5649908/1‑94 (MQ=60)

                                              CAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAAC                                                 >  SRR4302533.2827399/1‑94 (MQ=60)

                                              CAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAAC                                                 <  SRR4302533.2835390/94‑1 (MQ=60)

                                              CAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGCCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAAC                                                 >  SRR4302533.5861354/1‑94 (MQ=60)

                                               AACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACA                                                >  SRR4302533.3129561/1‑94 (MQ=60)

                                                ACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAG                                               <  SRR4302533.2336061/94‑1 (MQ=60)

                                                 CTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGC                                              <  SRR4302533.2719722/94‑1 (MQ=60)

                                                  TGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCT                                             <  SRR4302533.2268921/94‑1 (MQ=60)

                                                   GAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTC                                            <  SRR4302533.5892884/94‑1 (MQ=60)

                                                    AGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCA                                           <  SRR4302533.5375330/94‑1 (MQ=60)

                                                     GGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCAC                                          >  SRR4302533.4655964/1‑94 (MQ=60)

                                                      GATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACG                                         <  SRR4302533.2537012/94‑1 (MQ=60)

                                                        TGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAG                                       <  SRR4302533.5190188/94‑1 (MQ=60)

                                                        TGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAG                                       <  SRR4302533.2922413/94‑1 (MQ=60)

                                                        TGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAG                                       <  SRR4302533.6089633/94‑1 (MQ=60)

                                                         GGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGG                                      <  SRR4302533.2949881/94‑1 (MQ=60)

                                                         GGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGG                                      <  SRR4302533.2950001/94‑1 (MQ=60)

                                                         GGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGG                                      >  SRR4302533.3505374/1‑94 (MQ=60)

                                                          GAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGG                                     >  SRR4302533.3202272/1‑94 (MQ=60)

                                                            ATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAA                                   <  SRR4302533.4733713/94‑1 (MQ=60)

                                                             TCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAA                                  <  SRR4302533.286577/94‑1 (MQ=60)

                                                             TCCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAA                                  <  SRR4302533.2734035/94‑1 (MQ=60)

                                                              CCGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAA                                 >  SRR4302533.4009038/1‑94 (MQ=60)

                                                               CGCAATATTCCAGCGCCGAGTCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTACCAGCTCACGAGGGAAAAA                                <  SRR4302533.2140250/94‑1 (MQ=60)

                                                               CGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAA                                >  SRR4302533.4055019/1‑94 (MQ=60)

                                                               CGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAA                                >  SRR4302533.578516/1‑94 (MQ=60)

                                                               CGCAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAA                                >  SRR4302533.411801/1‑94 (MQ=60)

                                                                 CAATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATT                              <  SRR4302533.5458539/94‑1 (MQ=60)

                                                                   ATATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGC                            >  SRR4302533.1903619/1‑94 (MQ=60)

                                                                    TATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCG                           <  SRR4302533.4051381/94‑1 (MQ=60)

                                                                    TAGTCCAGCGCCGAGCCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCTTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCG                           <  SRR4302533.985947/94‑1 (MQ=60)

                                                                     ATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGG                          <  SRR4302533.5554257/94‑1 (MQ=60)

                                                                     ATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGG                          >  SRR4302533.5966778/1‑94 (MQ=60)

                                                                     ATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGG                          <  SRR4302533.903658/94‑1 (MQ=60)

                                                                     ATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGG                          <  SRR4302533.3651126/94‑1 (MQ=60)

                                                                     ATTCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGG                          <  SRR4302533.4194256/94‑1 (MQ=60)

                                                                       TCCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCG                        <  SRR4302533.2575391/94‑1 (MQ=60)

                                                                        CCAGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGT                       >  SRR4302533.6251661/1‑94 (MQ=60)

                                                                          AGCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCA                     >  SRR4302533.641375/1‑94 (MQ=60)

                                                                           GCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAG                    <  SRR4302533.2631900/94‑1 (MQ=60)

                                                                           GCGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAG                    <  SRR4302533.3925978/94‑1 (MQ=60)

                                                                            CGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGC                   >  SRR4302533.2828812/1‑94 (MQ=60)

                                                                            CGCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGC                   <  SRR4302533.1788062/94‑1 (MQ=60)

                                                                             GCCGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCG                  >  SRR4302533.4963809/1‑94 (MQ=60)

                                                                               CGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTGACAGCTCACGAGGGAAAACTTGCGGCGTCAGCGCG                >  SRR4302533.4980288/1‑94 (MQ=60)

                                                                               CGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGGGGCGTCAGCGCG                >  SRR4302533.232916/1‑94 (MQ=60)

                                                                               CGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCG                <  SRR4302533.5675334/94‑1 (MQ=60)

                                                                               CGAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCG                <  SRR4302533.315339/94‑1 (MQ=60)

                                                                                GAGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGT               >  SRR4302533.4303280/1‑94 (MQ=60)

                                                                                 AGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTG              >  SRR4302533.549959/1‑94 (MQ=60)

                                                                                 AGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTG              >  SRR4302533.2393121/1‑94 (MQ=60)

                                                                                 AGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTG              <  SRR4302533.1124596/94‑1 (MQ=60)

                                                                                 AGGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGAGTCAGACAGTCATGTAACAGCTCACGAGGGGAAAATTGCGGCGTCAGCGCGTG              >  SRR4302533.2845475/1‑94 (MQ=60)

                                                                                  GGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGC             <  SRR4302533.2972625/94‑1 (MQ=60)

                                                                                  GGCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGC             >  SRR4302533.4996318/1‑94 (MQ=60)

                                                                                   GCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCC            >  SRR4302533.5833325/1‑94 (MQ=60)

                                                                                   GCTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCC            >  SRR4302533.2214047/1‑94 (MQ=60)

                                                                                    CTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCA           <  SRR4302533.3740899/94‑1 (MQ=60)

                                                                                    CTTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCA           >  SRR4302533.1960751/1‑94 (MQ=60)

                                                                                     TTCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCAT          <  SRR4302533.3915426/94‑1 (MQ=60)

                                                                                      TCGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATA         >  SRR4302533.4422225/1‑94 (MQ=60)

                                                                                       CGTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAA        >  SRR4302533.4941250/1‑94 (MQ=60)

                                                                                        GTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAAG       <  SRR4302533.5453887/94‑1 (MQ=60)

                                                                                        GTCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAAG       >  SRR4302533.2717655/1‑94 (MQ=60)

                                                                                         TCGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAAGC      <  SRR4302533.2495438/94‑1 (MQ=60)

                                                                                          CGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAAGCC     >  SRR4302533.2649021/1‑94 (MQ=60)

                                                                                          CGGCAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAAGCC     <  SRR4302533.775629/94‑1 (MQ=60)

                                                                                             CAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAAGCCGTT  >  SRR4302533.1078890/1‑94 (MQ=60)

                                                                                             CAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAAGCCGTT  >  SRR4302533.2835319/1‑94 (MQ=60)

AATCTTCCGGGCGCGTGACTTTAATGTTATCCGCACGGCCTTCGACCAACTGAGGATGGAATCCGCAATATTCCAGCGCCGAGGCTTCGTCGGTAATAGTCGCGCCTTCATTTAGAGCGCGCGTCAGACAGTCATGTAACAGCTCACGAGGGAAAAATTGCGGCGTCAGCGCGTGCCATAAGCCGTT  >  NC_000913/2869856‑2870042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`