Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1548 369.5 20095359 96.9% 19472402 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,877,392 T→C E135G (GAG→GGG)  b2755 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,877,3920TC99.7% 1115.8 / ‑5.5 346E135G (GAG→GGG) b2755hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (156/187);  total (157/189)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

Only 100 of 366 total aligned reads displayed.

TAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCA  >  NC_000913/2877302‑2877481
                                                                                          |                                                                                         
  gCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTAc                                                                                       <  2:8678860/93‑1 (MQ=255)
     aCGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGa                                                                                    >  1:774631/1‑93 (MQ=255)
     aCGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGa                                                                                    >  1:7313726/1‑93 (MQ=255)
     aCGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGa                                                                                    <  1:2921729/93‑1 (MQ=255)
      cGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAg                                                                                   <  1:1720640/93‑1 (MQ=255)
       gTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAgc                                                                                  >  2:8420945/1‑93 (MQ=255)
       gTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTAAGTTGCCTTACGGAgc                                                                                  >  2:2014082/1‑93 (MQ=255)
        tccattccatGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAgcg                                                                                 >  2:7130278/1‑93 (MQ=255)
        tccattccatGTCACGCCGTATTGATTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAgcg                                                                                 >  2:5389283/1‑93 (MQ=255)
          cattccatGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGcc                                                                               <  1:5038924/93‑1 (MQ=255)
           attccatGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACATCTGAGTTGCCCTACGGAGCGCCg                                                                              <  2:6719660/93‑1 (MQ=255)
             tccatGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCggg                                                                            >  2:7420906/1‑93 (MQ=255)
              ccatGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGc                                                                           >  1:9538316/1‑93 (MQ=255)
              ccatGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGc                                                                           <  1:7584928/93‑1 (MQ=255)
               catGTCCCGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCa                                                                          <  1:7511969/93‑1 (MQ=255)
               catGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCa                                                                          <  1:9311952/93‑1 (MQ=255)
               catGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCa                                                                          >  1:4806612/1‑93 (MQ=255)
               catGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCa                                                                          <  1:6443817/93‑1 (MQ=255)
                 tGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAgg                                                                        >  2:3013137/1‑93 (MQ=255)
                 tGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAgg                                                                        <  1:2300384/93‑1 (MQ=255)
                 tGTCACGCCGTATTGCTTCGCCAGAAGTGCCTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAgg                                                                        <  2:1720981/93‑1 (MQ=255)
                   tCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGgcg                                                                      <  2:776787/93‑1 (MQ=255)
                    cACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGgcgc                                                                     <  1:7111083/93‑1 (MQ=255)
                     aCGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCa                                                                    <  1:5282198/93‑1 (MQ=255)
                      cGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGCTGCAATACGGAGCGCCGGGCAGGCGCAg                                                                   >  2:5302159/1‑93 (MQ=255)
                       gCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAgg                                                                  <  2:8010350/93‑1 (MQ=255)
                       gCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAgg                                                                  <  1:8069976/93‑1 (MQ=255)
                        ccGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGt                                                                 >  1:7025472/1‑93 (MQ=255)
                         cGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGtt                                                                <  1:360834/93‑1 (MQ=255)
                         cGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGtt                                                                >  1:1027243/1‑93 (MQ=255)
                          gTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTtc                                                               >  2:8584773/1‑93 (MQ=255)
                           tATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTtct                                                              >  2:3487853/1‑93 (MQ=255)
                           tATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTtct                                                              >  1:4196265/1‑93 (MQ=255)
                           gaTTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTtct                                                              <  1:1479806/92‑1 (MQ=255)
                             ttGCTTCGCCAGAAGTGCGTAGGTTGCCCGCCCGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTcc                                                            <  1:3393630/93‑1 (MQ=255)
                             ttGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTcc                                                            <  2:9733566/93‑1 (MQ=255)
                                cTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCaaa                                                         >  1:433908/1‑93 (MQ=255)
                                 ttCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAAc                                                        <  1:6590849/93‑1 (MQ=255)
                                 ttCGCCAGAAGAGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAAc                                                        >  2:1370972/1‑93 (MQ=255)
                                  tCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAAcc                                                       <  2:3118085/93‑1 (MQ=255)
                                    gCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGa                                                     >  2:5081268/1‑93 (MQ=255)
                                     ccAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGaa                                                    >  1:3759371/1‑93 (MQ=255)
                                      cAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAg                                                   <  2:6394068/93‑1 (MQ=255)
                                      cAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAg                                                   >  2:7827861/1‑93 (MQ=255)
                                      cAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAg                                                   >  2:2085485/1‑93 (MQ=255)
                                       aGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGt                                                  >  2:2800511/1‑93 (MQ=255)
                                       aGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGt                                                  >  1:8930958/1‑93 (MQ=255)
                                       aGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGt                                                  >  1:4615319/1‑93 (MQ=255)
                                        gAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGtt                                                 >  1:1911226/1‑93 (MQ=255)
                                           gTGCGTAGGTTGCTCTCACGCGACTGCCTTCTATACCTCTGAGTGGCGCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCaa                                              <  2:3993517/93‑1 (MQ=255)
                                           gTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCaa                                              <  2:9255986/93‑1 (MQ=255)
                                           gTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCaa                                              <  2:8391643/93‑1 (MQ=255)
                                              cGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACa                                           <  2:5828759/93‑1 (MQ=255)
                                               gTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCATGCGCAGGTTCTCCAAACCGAAGTTCAAACAt                                          >  1:441579/1‑93 (MQ=255)
                                               gTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACAt                                          >  1:8732043/1‑93 (MQ=255)
                                                tAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACAtt                                         <  2:1818979/93‑1 (MQ=255)
                                                tAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACAtt                                         <  2:4169779/93‑1 (MQ=255)
                                                  ggTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACAtttt                                       <  1:4105674/93‑1 (MQ=255)
                                                   gTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTta                                      >  2:3333766/1‑93 (MQ=255)
                                                     tGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTtacg                                    <  1:9694800/93‑1 (MQ=255)
                                                     tGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTtacg                                    <  1:1348683/93‑1 (MQ=255)
                                                      gCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTtacgt                                   <  2:5551079/93‑1 (MQ=255)
                                                       cccGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTtacgta                                  <  2:1230852/93‑1 (MQ=255)
                                                       cccGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTtacgta                                  <  1:6081887/93‑1 (MQ=255)
                                                         cGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTtacgtacg                                <  1:3961815/93‑1 (MQ=255)
                                                         cGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTtacgtacg                                >  1:54457/1‑93 (MQ=255)
                                                          gCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGa                               <  1:8484538/93‑1 (MQ=255)
                                                           cACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGAc                              <  1:7940688/93‑1 (MQ=255)
                                                           cACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGAc                              <  2:4514249/93‑1 (MQ=255)
                                                           cACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGAc                              <  1:6370327/93‑1 (MQ=255)
                                                              gcgACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCtt                           >  2:3653930/1‑93 (MQ=255)
                                                              gcgACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCtt                           >  2:2197183/1‑93 (MQ=255)
                                                              gcgACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCtt                           >  1:7669563/1‑93 (MQ=255)
                                                               cgACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTc                          <  2:4416182/93‑1 (MQ=255)
                                                                gACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCa                         >  1:553173/1‑93 (MQ=255)
                                                                 aCTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAg                        >  2:6153392/1‑93 (MQ=255)
                                                                 aCTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAg                        >  2:7261511/1‑93 (MQ=255)
                                                                  cTGCCTTCTATGCCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGa                       <  1:2553629/93‑1 (MQ=255)
                                                                  cTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGa                       <  1:2838002/93‑1 (MQ=255)
                                                                  cTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGa                       <  1:2999566/93‑1 (MQ=255)
                                                                  cTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGa                       >  1:8306898/1‑93 (MQ=255)
                                                                  cTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGa                       <  2:518652/93‑1 (MQ=255)
                                                                   tGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGAc                      >  2:3571345/1‑93 (MQ=255)
                                                                    gCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACg                     >  2:10043729/1‑93 (MQ=255)
                                                                    gCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACg                     <  2:9551524/93‑1 (MQ=255)
                                                                     ccTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGc                    <  2:6983655/93‑1 (MQ=255)
                                                                      cTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCa                   >  2:5473139/1‑93 (MQ=255)
                                                                      cTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCa                   >  2:8222489/1‑93 (MQ=255)
                                                                       ttCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCCAACCGACGTTCAAACATTTTACGTACGACCTTCAGACGaaa                  >  1:2689850/1‑93 (MQ=255)
                                                                       ttCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCaa                  >  1:9766894/1‑93 (MQ=255)
                                                                       ttCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCaa                  >  2:4720241/1‑93 (MQ=255)
                                                                       ttCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGGTCAAACATTTTACGTACGACCTTCAGACGaaa                  >  2:2717844/1‑93 (MQ=255)
                                                                        tCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCaaa                 >  1:5633958/1‑93 (MQ=255)
                                                                          tataCCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATc               <  1:1237776/93‑1 (MQ=255)
                                                                              ccTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCa           >  2:6817759/1‑93 (MQ=255)
                                                                              ccTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCa           >  2:9095965/1‑93 (MQ=255)
                                                                                  tGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCa       <  2:6589514/93‑1 (MQ=255)
                                                                                   gAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCag      <  2:37850/93‑1 (MQ=255)
                                                                                    aGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCaga     <  1:3073330/93‑1 (MQ=255)
                                                                                       tGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCa  >  2:2548074/1‑93 (MQ=255)
                                                                                          |                                                                                         
TAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCA  >  NC_000913/2877302‑2877481

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTT  >  NC_000913/2877299‑2877485
                                                                                             |                                                                                             
TCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCC                                                                                               <  SRR4302540.10025274/94‑1 (MQ=60)
 CGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCC                                                                                              <  SRR4302540.632352/94‑1 (MQ=60)
  GTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCT                                                                                             <  SRR4302540.1988361/94‑1 (MQ=60)
  GTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCT                                                                                             >  SRR4302540.1925611/1‑94 (MQ=60)
  GTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCT                                                                                             >  SRR4302540.8123387/1‑94 (MQ=60)
  GTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCT                                                                                             >  SRR4302540.4897675/1‑94 (MQ=60)
   TAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTA                                                                                            <  SRR4302540.5626416/94‑1 (MQ=60)
    tgcgacttgtATTCCATGTGACGCCTTATTGCTTCGCCAGGAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTAC                                                                                           <  SRR4302540.1717335/84‑1 (MQ=60)
    AGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTAC                                                                                           <  SRR4302540.1149077/94‑1 (MQ=60)
     GCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGTCTGCCTTCTATCCCTCTGAGTTGCCCTACG                                                                                          <  SRR4302540.107811/94‑1 (MQ=60)
     GCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACG                                                                                          <  SRR4302540.6229248/94‑1 (MQ=60)
     GCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACG                                                                                          <  SRR4302540.5780178/94‑1 (MQ=60)
      CGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGG                                                                                         <  SRR4302540.2623891/94‑1 (MQ=60)
      CGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGG                                                                                         >  SRR4302540.2447269/1‑94 (MQ=60)
      CGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGG                                                                                         >  SRR4302540.3171984/1‑94 (MQ=60)
       GACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGA                                                                                        >  SRR4302540.782862/1‑94 (MQ=60)
       GACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGA                                                                                        >  SRR4302540.7395394/1‑94 (MQ=60)
       CACGTCCATTCCATGTCACGCCGTATTGCTTCGCCGGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGA                                                                                        <  SRR4302540.386693/94‑1 (MQ=60)
        ACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAG                                                                                       <  SRR4302540.2953747/94‑1 (MQ=60)
        ACGTCCAGTCCATCTCCCGCCGTATTGTTTCGCCAGAAGGGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAG                                                                                       <  SRR4302540.2953748/94‑1 (MQ=60)
         CGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGC                                                                                      <  SRR4302540.4763936/94‑1 (MQ=60)
         CGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGC                                                                                      <  SRR4302540.17206/94‑1 (MQ=60)
         CGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGC                                                                                      <  SRR4302540.1739212/94‑1 (MQ=60)
          GTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCG                                                                                     >  SRR4302540.10080027/1‑94 (MQ=60)
          GTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCG                                                                                     <  SRR4302540.4051534/94‑1 (MQ=60)
           TCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCAGGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGCAGCGC                                                                                    >  SRR4302540.5478434/1‑94 (MQ=60)
           TCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGC                                                                                    >  SRR4302540.8111795/1‑94 (MQ=60)
            CCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCC                                                                                   <  SRR4302540.8021808/94‑1 (MQ=60)
             CATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCG                                                                                  <  SRR4302540.5093432/94‑1 (MQ=60)
             CATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCG                                                                                  >  SRR4302540.4366100/1‑94 (MQ=60)
             CATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCA                                                                                  <  SRR4302540.3439815/94‑1 (MQ=60)
              ATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGG                                                                                 <  SRR4302540.5611731/94‑1 (MQ=60)
              ATACCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATCCCTCTGAGTTGCCCTACGGAGCGCCGG                                                                                 <  SRR4302540.5350576/94‑1 (MQ=60)
                TCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGC                                                                               >  SRR4302540.9651203/1‑94 (MQ=60)
                TCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGC                                                                               <  SRR4302540.8227281/94‑1 (MQ=60)
                 CCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCA                                                                              <  SRR4302540.1506642/94‑1 (MQ=60)
                 CCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCA                                                                              <  SRR4302540.7670084/94‑1 (MQ=60)
                 CCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCA                                                                              >  SRR4302540.4858059/1‑94 (MQ=60)
                  CATGTCCCGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAG                                                                             <  SRR4302540.7595940/94‑1 (MQ=60)
                  CATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAG                                                                             >  SRR4302540.7748476/1‑94 (MQ=60)
                  CATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAG                                                                             <  SRR4302540.9423107/94‑1 (MQ=60)
                  CATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAG                                                                             <  SRR4302540.9423108/94‑1 (MQ=60)
                  CATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAG                                                                             <  SRR4302540.6515547/94‑1 (MQ=60)
                  CATGTCACGCCGTATTGCTTCGCCAGAAGTGCGGAGGTTCCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAG                                                                             <  SRR4302540.7595941/94‑1 (MQ=60)
                   ATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATCCCTCTGAGTTGCCCTACGGAGCGCCGGGCAGG                                                                            <  SRR4302540.5408166/94‑1 (MQ=60)
                   ATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGG                                                                            >  SRR4302540.4533710/1‑94 (MQ=60)
                   ATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGG                                                                            <  SRR4302540.6609698/94‑1 (MQ=60)
                    TGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGC                                                                           >  SRR4302540.9575276/1‑94 (MQ=60)
                    TGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGC                                                                           <  SRR4302540.3079655/94‑1 (MQ=60)
                    TGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGC                                                                           <  SRR4302540.2325127/94‑1 (MQ=60)
                     GTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCG                                                                          <  SRR4302540.2927224/94‑1 (MQ=60)
                       CACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATGCCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCA                                                                        <  SRR4302540.1414485/94‑1 (MQ=60)
                       CACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCA                                                                        <  SRR4302540.1414486/94‑1 (MQ=60)
                       CACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCA                                                                        <  SRR4302540.7190230/94‑1 (MQ=60)
                        CCGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAG                                                                       <  SRR4302540.441290/94‑1 (MQ=60)
                        CCGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAG                                                                       <  SRR4302540.441289/94‑1 (MQ=60)
                        ACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAG                                                                       <  SRR4302540.5339907/94‑1 (MQ=60)
                        ACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAG                                                                       <  SRR4302540.6089443/94‑1 (MQ=60)
                          GCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGT                                                                     <  SRR4302540.8163611/94‑1 (MQ=60)
                          GCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGT                                                                     >  SRR4302540.7103516/1‑94 (MQ=60)
                           CCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTT                                                                    >  SRR4302540.1037663/1‑94 (MQ=60)
                           CCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTT                                                                    <  SRR4302540.7686594/94‑1 (MQ=60)
                            CGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTC                                                                   >  SRR4302540.3721862/1‑94 (MQ=60)
                            CGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTC                                                                   <  SRR4302540.364541/94‑1 (MQ=60)
                            CGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTC                                                                   >  SRR4302540.3629220/1‑94 (MQ=60)
                             GTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCT                                                                  <  SRR4302540.7581705/94‑1 (MQ=60)
                             GTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCT                                                                  <  SRR4302540.9037732/94‑1 (MQ=60)
                             GTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCT                                                                  >  SRR4302540.5104169/1‑94 (MQ=60)
                             GTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCT                                                                  >  SRR4302540.8801382/1‑94 (MQ=60)
                             GTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCT                                                                  >  SRR4302540.6413717/1‑94 (MQ=60)
                             GTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCT                                                                  >  SRR4302540.4241911/1‑94 (MQ=60)
                             GTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCT                                                                  >  SRR4302540.5567644/1‑94 (MQ=60)
                             GTATTGCTTCGCCAGAAGAGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCT                                                                  >  SRR4302540.4241913/1‑94 (MQ=60)
                              TATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTC                                                                 >  SRR4302540.7929261/1‑94 (MQ=60)
                              GATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTC                                                                 <  SRR4302540.1496014/94‑1 (MQ=60)
                               ATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCC                                                                <  SRR4302540.8402520/94‑1 (MQ=60)
                               ATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCC                                                                >  SRR4302540.2173218/1‑94 (MQ=60)
                                TTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCCCGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCA                                                               <  SRR4302540.3430652/94‑1 (MQ=60)
                                 TGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAA                                                              <  SRR4302540.2905639/94‑1 (MQ=60)
                                 TGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAA                                                              <  SRR4302540.3738185/94‑1 (MQ=60)
                                  GCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAA                                                             >  SRR4302540.438495/1‑94 (MQ=60)
                                    TTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACC                                                           <  SRR4302540.974503/94‑1 (MQ=60)
                                    TTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACC                                                           <  SRR4302540.6546012/94‑1 (MQ=60)
                                    TTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACC                                                           <  SRR4302540.6562631/94‑1 (MQ=60)
                                    TTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACC                                                           <  SRR4302540.6663843/94‑1 (MQ=60)
                                     TCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCG                                                          >  SRR4302540.1931683/1‑94 (MQ=60)
                                      CGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGA                                                         >  SRR4302540.4947107/1‑94 (MQ=60)
                                      CGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGA                                                         >  SRR4302540.3023253/1‑94 (MQ=60)
                                      CGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGA                                                         >  SRR4302540.9706083/1‑94 (MQ=60)
                                       GCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAA                                                        >  SRR4302540.3800382/1‑94 (MQ=60)
                                       GCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAA                                                        >  SRR4302540.249738/1‑94 (MQ=60)
                                        CCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAG                                                       <  SRR4302540.7321519/94‑1 (MQ=60)
                                         CAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGT                                                      >  SRR4302540.9035173/1‑94 (MQ=60)
                                         CAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGT                                                      >  SRR4302540.4664830/1‑94 (MQ=60)
                                          AGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTT                                                     >  SRR4302540.1932107/1‑94 (MQ=60)
                                          AGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTT                                                     <  SRR4302540.7833064/94‑1 (MQ=60)
                                          AGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTT                                                     >  SRR4302540.1932105/1‑94 (MQ=60)
                                          AGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTT                                                     <  SRR4302540.4049127/94‑1 (MQ=60)
                                          AGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTT                                                     <  SRR4302540.4049126/94‑1 (MQ=60)
                                          AGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTT                                                     >  SRR4302540.752063/1‑94 (MQ=60)
                                           GAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTC                                                    <  SRR4302540.7602654/94‑1 (MQ=60)
                                           GAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTC                                                    <  SRR4302540.7602652/94‑1 (MQ=60)
                                               tgccgAGGTTGCCCGCACCCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAAC                                                <  SRR4302540.778865/89‑1 (MQ=60)
                                               TGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTGTCCAAACCGAAGTTCAAAA                                                >  SRR4302540.7211562/1‑94 (MQ=60)
                                               TGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAAC                                                <  SRR4302540.778864/94‑1 (MQ=60)
                                               TGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGACCTACGGAGCGCGGGGAAGGCGCAGGTTCTCCAAccggaggttcaaaa                                                >  SRR4302540.7211561/1‑80 (MQ=60)
                                                 CGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCATGCGCAGGTTCTCCAAACCGAAGTTCAAACAT                                              >  SRR4302540.446279/1‑94 (MQ=60)
                                                 CGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACAT                                              >  SRR4302540.5507178/1‑94 (MQ=60)
                                                 CGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACAT                                              >  SRR4302540.2418806/1‑94 (MQ=60)
                                                 CGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACAT                                              >  SRR4302540.8833450/1‑94 (MQ=60)
                                                 CGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGATCTCCAAACCGAACTTCAAACGT                                              >  SRR4302540.3414495/1‑94 (MQ=60)
                                                  GTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTTCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATT                                             >  SRR4302540.821744/1‑94 (MQ=60)
                                                  GTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATT                                             >  SRR4302540.8884778/1‑94 (MQ=60)
                                                  GTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATT                                             >  SRR4302540.8573528/1‑94 (MQ=60)
                                                   TAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTT                                            <  SRR4302540.4854145/94‑1 (MQ=60)
                                                    AGGTAGCCCGCACGCGACTGCCTTCTATACCTCTGAGTAGCCCTACAGAGCGCCGGGCAGGCGCAGGTACTCCAAACCGAAGTTCAAACATTTT                                           <  SRR4302540.9026269/94‑1 (MQ=60)
                                                     GGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGTGCAGGTTCTCCAAACCGAAGTTCAAACATTTTA                                          >  SRR4302540.9806922/1‑94 (MQ=60)
                                                     GGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTA                                          >  SRR4302540.1340092/1‑94 (MQ=60)
                                                     GGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTA                                          <  SRR4302540.4149970/94‑1 (MQ=60)
                                                     GGTTGCCCGCACGCGACTGCCTTCTAGACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTA                                          <  SRR4302540.3003880/94‑1 (MQ=60)
                                                      GTTGCCCGCTGGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAACCCGAAGTTCAAACATTTTAC                                         <  SRR4302540.2876543/94‑1 (MQ=60)
                                                      GTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTAC                                         <  SRR4302540.1351057/94‑1 (MQ=60)
                                                      GTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTAC                                         <  SRR4302540.8832768/94‑1 (MQ=60)
                                                       TTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACG                                        >  SRR4302540.3153858/1‑94 (MQ=60)
                                                       TTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACG                                        <  SRR4302540.2646693/94‑1 (MQ=60)
                                                       TTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACG                                        <  SRR4302540.7748450/94‑1 (MQ=60)
                                                       TTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACG                                        <  SRR4302540.4437657/94‑1 (MQ=60)
                                                        TGCCCGCACGCGAGTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGT                                       >  SRR4302540.3866951/1‑94 (MQ=60)
                                                        TGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGT                                       <  SRR4302540.2201382/94‑1 (MQ=60)
                                                        TGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGT                                       <  SRR4302540.1362851/94‑1 (MQ=60)
                                                        TGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGT                                       <  SRR4302540.9808811/94‑1 (MQ=60)
                                                          CCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTAC                                     <  SRR4302540.1600650/94‑1 (MQ=60)
                                                          CCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTAA                                     <  SRR4302540.6149549/94‑1 (MQ=60)
                                                           CCGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACG                                    >  SRR4302540.55002/1‑94 (MQ=60)
                                                            CGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGA                                   <  SRR4302540.4004541/94‑1 (MQ=60)
                                                            CGCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGA                                   >  SRR4302540.5946277/1‑94 (MQ=60)
                                                             GCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGAC                                  >  SRR4302540.7172594/1‑94 (MQ=60)
                                                             GCACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGAC                                  <  SRR4302540.8583105/94‑1 (MQ=60)
                                                              CACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACC                                 <  SRR4302540.6441262/94‑1 (MQ=60)
                                                              CACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACC                                 >  SRR4302540.273674/1‑94 (MQ=60)
                                                              CACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACC                                 <  SRR4302540.8033228/94‑1 (MQ=60)
                                                              CACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACC                                 <  SRR4302540.3091800/94‑1 (MQ=60)
                                                               ACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCT                                <  SRR4302540.928462/94‑1 (MQ=60)
                                                               ACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCT                                >  SRR4302540.3984600/1‑94 (MQ=60)
                                                               ACGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCT                                >  SRR4302540.6974064/1‑94 (MQ=60)
                                                                CGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTT                               <  SRR4302540.3519316/94‑1 (MQ=60)
                                                                CGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTT                               >  SRR4302540.7756026/1‑94 (MQ=60)
                                                                CGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTT                               >  SRR4302540.7756027/1‑94 (MQ=60)
                                                                CGCGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTT                               >  SRR4302540.6311922/1‑94 (MQ=60)
                                                                  CGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCA                             <  SRR4302540.7181964/94‑1 (MQ=60)
                                                                  CGACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCA                             >  SRR4302540.559204/1‑94 (MQ=60)
                                                                   gaccaCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACTACCTTCAG                            <  SRR4302540.6943469/89‑1 (MQ=60)
                                                                   GACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAG                            <  SRR4302540.6943470/94‑1 (MQ=60)
                                                                   GACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAG                            >  SRR4302540.9868700/1‑94 (MQ=60)
                                                                   GACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAG                            >  SRR4302540.4167530/1‑94 (MQ=60)
                                                                    ACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGA                           >  SRR4302540.8403346/1‑94 (MQ=60)
                                                                    ACTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGA                           >  SRR4302540.5063601/1‑94 (MQ=60)
                                                                     CTGCCTTCTATGCCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGAC                          <  SRR4302540.2581148/94‑1 (MQ=60)
                                                                     CTGCCTTCTATCCCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGAC                          <  SRR4302540.4726856/94‑1 (MQ=60)
                                                                     CTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGAC                          <  SRR4302540.3032611/94‑1 (MQ=60)
                                                                     CTGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGAC                          <  SRR4302540.2868699/94‑1 (MQ=60)
                                                                      TGCCTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACG                         <  SRR4302540.5217956/94‑1 (MQ=60)
                                                                         CTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCCAACCGACGTTCAAACATTTTACGTACGACCTTCAGACGAAA                      >  SRR4302540.2718910/1‑94 (MQ=60)
                                                                         CTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAA                      >  SRR4302540.9881427/1‑94 (MQ=60)
                                                                         CTTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAA                      >  SRR4302540.8730470/1‑94 (MQ=60)
                                                                          TTCTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAA                     >  SRR4302540.5695967/1‑94 (MQ=60)
                                                                            CTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATC                   <  SRR4302540.2729092/94‑1 (MQ=60)
                                                                            CTATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATC                   >  SRR4302540.644530/1‑94 (MQ=60)
                                                                             TATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCT                  <  SRR4302540.9834002/94‑1 (MQ=60)
                                                                             TATACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCT                  <  SRR4302540.1250411/94‑1 (MQ=60)
                                                                               TACCTCTGAGTTTCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGACGGTCAAACATTTTACGTACGACCTTCAGACGCACATCTTC                >  SRR4302540.9995123/1‑94 (MQ=60)
                                                                                ACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCA               >  SRR4302540.6485819/1‑94 (MQ=60)
                                                                                ACCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGGTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCA               >  SRR4302540.2697520/1‑94 (MQ=60)
                                                                                 CCTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCAT              <  SRR4302540.5526053/94‑1 (MQ=60)
                                                                                  CTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATC             >  SRR4302540.8131764/1‑94 (MQ=60)
                                                                                  CTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATC             >  SRR4302540.7438964/1‑94 (MQ=60)
                                                                                  CTCTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATC             >  SRR4302540.8573515/1‑94 (MQ=60)
                                                                                    CTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCA           >  SRR4302540.9534183/1‑94 (MQ=60)
                                                                                    CTGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGATCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGAAAATCTTCATCCA           >  SRR4302540.4183215/1‑94 (MQ=60)
                                                                                     TGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAG          <  SRR4302540.6743803/94‑1 (MQ=60)
                                                                                     TGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAG          <  SRR4302540.4527961/94‑1 (MQ=60)
                                                                                     TGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAG          <  SRR4302540.125268/94‑1 (MQ=60)
                                                                                     TGAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAG          <  SRR4302540.9914794/94‑1 (MQ=60)
                                                                                      GAGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGA         <  SRR4302540.4273606/94‑1 (MQ=60)
                                                                                       AGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAG        <  SRR4302540.9002162/94‑1 (MQ=60)
                                                                                       AGTTGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAG        <  SRR4302540.3107047/94‑1 (MQ=60)
                                                                                        GTCGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGC       <  SRR4302540.5668327/94‑1 (MQ=60)
                                                                                          TGCCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAA     >  SRR4302540.7367076/1‑94 (MQ=60)
                                                                                            CCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGT   <  SRR4302540.5032373/94‑1 (MQ=60)
                                                                                            CCCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGT   <  SRR4302540.1923788/94‑1 (MQ=60)
                                                                                             CCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTT  <  SRR4302540.8467064/94‑1 (MQ=60)
                                                                                             CCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTT  <  SRR4302540.10140245/94‑1 (MQ=60)
                                                                                             CCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTT  <  SRR4302540.6262840/94‑1 (MQ=60)
                                                                                             |                                                                                             
TCGTAGCGACGTCCATTCCATGTCACGCCGTATTGCTTCGCCAGAAGTGCGTAGGTTGCCCGCACGCGACTGCCTTCTATACCTCTGAGTTGCTCTACGGAGCGCCGGGCAGGCGCAGGTTCTCCAAACCGAAGTTCAAACATTTTACGTACGACCTTCAGACGCAAATCTTCATCCAGAGCAAGTT  >  NC_000913/2877299‑2877485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: