Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,933,024	T→C	R256R (CGT→CGC)	fucP →	fucose permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,933,024	0	T	C	100.0%	832.6 / NA	255	R256R (CGT→CGC)	fucP	fucose permease
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (118/137); total (118/137)

Only 100 of 263 total aligned reads displayed.

ATGCTGACGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGTATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGCTGT  >  NC_000913/2932935‑2933113

 tGCTGACGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTc                                                                                       >  2:4541524/1‑93 (MQ=255)

  gCTGACGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCg                                                                                      <  2:3735454/93‑1 (MQ=255)

  gCTGACGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCACCGCATCGCTTTCTCGCCTGGCGCGCATTCg                                                                                      >  1:5639502/1‑93 (MQ=255)

   cTGACGAAAGTCCCGGCATTGCAGAGTGATAAGCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGc                                                                                     <  2:1475107/93‑1 (MQ=255)

    tGACGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGcc                                                                                    >  2:2913308/1‑93 (MQ=255)

      aCGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCAc                                                                                  <  2:1128177/93‑1 (MQ=255)

         aaaTTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTGGCCACTgg                                                                               >  2:5460453/1‑93 (MQ=255)

         aaaTTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTgg                                                                               >  2:6149612/1‑93 (MQ=255)

         aaaTTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTgg                                                                               >  2:3656430/1‑93 (MQ=255)

         aaaTTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTgg                                                                               >  1:938214/1‑93 (MQ=255)

          aaTTCCCAGCTTTGCAGAGTGATACTCACAGTCCCGCTAAACAAGGATCGTTCTCCTCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGgc                                                                              <  2:2273547/93‑1 (MQ=255)

           aTTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGgcg                                                                             >  2:6267301/1‑93 (MQ=255)

            ttCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGgcgc                                                                            <  1:3315967/93‑1 (MQ=255)

            ttCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGgcgc                                                                            >  1:742306/1‑93 (MQ=255)

             tCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCt                                                                           <  1:1182168/93‑1 (MQ=255)

              cccGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTg                                                                          <  2:3464027/93‑1 (MQ=255)

               ccGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTgg                                                                         <  2:315237/93‑1 (MQ=255)

               ccGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTgg                                                                         >  1:3410118/1‑93 (MQ=255)

                cGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTggg                                                                        <  1:511272/93‑1 (MQ=255)

                cGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTggg                                                                        <  2:1069342/93‑1 (MQ=255)

                  gCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCg                                                                      <  2:5113451/93‑1 (MQ=255)

                    aTTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGt                                                                    >  1:5956198/1‑93 (MQ=255)

                     ttGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTa                                                                   >  2:4600903/1‑93 (MQ=255)

                       gCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTAtt                                                                 >  1:2562796/1‑93 (MQ=255)

                       gCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTAtt                                                                 >  2:2995812/1‑93 (MQ=255)

                        cAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTa                                                                <  1:6071647/93‑1 (MQ=255)

                         agagTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAg                                                               <  1:2085354/93‑1 (MQ=255)

                          gagTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAgc                                                              <  2:1860581/93‑1 (MQ=255)

                           agTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAgcg                                                             <  1:1652901/93‑1 (MQ=255)

                              gATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCaa                                                          <  2:1320694/93‑1 (MQ=255)

                              gATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCaa                                                          >  1:4301247/1‑93 (MQ=255)

                               aTAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAgcg                                                             >  1:6204038/1‑89 (MQ=255)

                                tAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAAtt                                                        >  1:1938604/1‑93 (MQ=255)

                                 aaTCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTc                                                       >  1:1393483/1‑93 (MQ=255)

                                 aaTCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTc                                                       >  1:3648257/1‑93 (MQ=255)

                                 aaTCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTc                                                       <  1:4312930/93‑1 (MQ=255)

                                  aTCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCt                                                      <  2:3977501/93‑1 (MQ=255)

                                  aTCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCt                                                      >  1:1530158/1‑93 (MQ=255)

                                  aTCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCt                                                      <  2:2815658/93‑1 (MQ=255)

                                    cccaGTGACGCCAAACAAGGATCGTTCTCCGCAGCGCTTTCTCGCCTGGCGCGCATTCGCCAGTGGCGCTGGGCGGTATTAGCGCAATTCTGc                                                    <  1:1025073/91‑1 (MQ=255)

                                     acaGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCt                                                   >  2:2860042/1‑93 (MQ=255)

                                      caGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTa                                                  >  2:2960817/1‑93 (MQ=255)

                                      caGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTa                                                  <  2:1583192/93‑1 (MQ=255)

                                      caGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTa                                                  <  2:5352850/93‑1 (MQ=255)

                                       aGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTAt                                                 <  1:4981307/93‑1 (MQ=255)

                                       aGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTAt                                                 <  2:4065524/93‑1 (MQ=255)

                                        gTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATg                                                <  1:1342889/93‑1 (MQ=255)

                                        gTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATg                                                >  1:3051436/1‑93 (MQ=255)

                                         tGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGt                                               <  1:2176405/93‑1 (MQ=255)

                                          gACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTc                                              <  1:3228253/93‑1 (MQ=255)

                                             gCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGgc                                           >  2:4935108/1‑93 (MQ=255)

                                             gCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGgc                                           >  1:5486763/1‑93 (MQ=255)

                                               cAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGgcgc                                         >  2:1635990/1‑93 (MQ=255)

                                                aaaCAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGca                                        >  1:2913328/1‑93 (MQ=255)

                                                aaaCAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGca                                        >  1:5021847/1‑93 (MQ=255)

                                                    aaGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACaaa                                    <  1:320382/93‑1 (MQ=255)

                                                    aaGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACaaa                                    <  1:2194027/93‑1 (MQ=255)

                                                    aaGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACaaa                                    >  1:5458457/1‑93 (MQ=255)

                                                    aaGGACCGTCCTCCGCACCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACaaa                                    <  2:792836/93‑1 (MQ=255)

                                                     aGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAAc                                   >  2:2144850/1‑93 (MQ=255)

                                                     aGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAAc                                   <  1:3795494/93‑1 (MQ=255)

                                                      ggATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACg                                  >  2:4449681/1‑93 (MQ=255)

                                                         tCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGcc                               <  1:3971180/93‑1 (MQ=255)

                                                         tCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGcc                               <  1:5742839/93‑1 (MQ=255)

                                                         tCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGcc                               <  2:4340409/93‑1 (MQ=255)

                                                         tCGTGCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACggtc                               <  2:6210575/93‑3 (MQ=255)

                                                           gTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCctg                             >  1:781416/1‑93 (MQ=255)

                                                            ttCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCctgc                            <  1:1727296/93‑1 (MQ=255)

                                                            ttCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCctgc                            <  2:4857859/93‑1 (MQ=255)

                                                             tctcCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCctgct                           <  1:5809189/93‑1 (MQ=255)

                                                              ctcCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCctgctg                          <  1:4069958/93‑1 (MQ=255)

                                                                 cGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAg                       <  1:2054042/93‑1 (MQ=255)

                                                                  gCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGc                      >  1:4576759/1‑93 (MQ=255)

                                                                  gCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGc                      >  1:505338/1‑93 (MQ=255)

                                                                  gCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGc                      <  2:5386144/93‑1 (MQ=255)

                                                                    aTCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTa                    <  2:2168327/93‑1 (MQ=255)

                                                                    aTCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTa                    <  2:3633905/93‑1 (MQ=255)

                                                                     tCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTAt                   >  2:3811018/1‑93 (MQ=255)

                                                                     tCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTAt                   <  2:5549140/93‑1 (MQ=255)

                                                                     tCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTAt                   >  1:248912/1‑93 (MQ=255)

                                                                     tCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTAt                   >  1:4471575/1‑93 (MQ=255)

                                                                      cGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTAtt                  <  2:5998270/93‑1 (MQ=255)

                                                                      cGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTAtt                  <  1:3431947/93‑1 (MQ=255)

                                                                        cTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTg                >  1:840700/1‑93 (MQ=255)

                                                                         tttCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGa               <  1:2300316/93‑1 (MQ=255)

                                                                           tctcGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGAtt             >  2:5841941/1‑93 (MQ=255)

                                                                           tctcGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGATATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGAtt             >  1:5432495/1‑93 (MQ=255)

                                                                            ctcGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTc            <  2:4160189/93‑1 (MQ=255)

                                                                            cgcGCCTGGCGAGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTc            <  2:2056555/91‑1 (MQ=255)

                                                                             tcGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACAGCCTGCTGGAGCTATTTGATTCg           >  2:24573/1‑93 (MQ=255)

                                                                              cGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGc          >  2:5748804/1‑93 (MQ=255)

                                                                               gCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCt         >  1:6281180/1‑93 (MQ=255)

                                                                                ccTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTa        <  2:3913386/93‑1 (MQ=255)

                                                                                ccTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTa        <  2:3421151/93‑1 (MQ=255)

                                                                                 cTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTAc       >  2:1175808/1‑93 (MQ=255)

                                                                                 cTGGCGCGCATTCGCAACTGGCGCTGGGCGGGATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTAc       >  1:552284/1‑93 (MQ=255)

                                                                                  tGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACg      >  2:261010/1‑93 (MQ=255)

                                                                                   ggCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGc     <  1:472921/93‑1 (MQ=255)

                                                                                     cgcgCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGCTg   <  2:3567098/93‑1 (MQ=255)

                                                                                      gcgcATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGCTGt  <  2:5203358/93‑1 (MQ=255)

ATGCTGACGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGTATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGCTGT  >  NC_000913/2932935‑2933113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGCTGACGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGTATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGCTGTAGAA  >  NC_000913/2932935‑2933117

ATGCTGACGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTC                                                                                           >  SRR4302533.3879238/1‑94 (MQ=60)

 TGCTGACGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCG                                                                                          >  SRR4302533.782663/1‑94 (MQ=60)

 TGCTGACGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCACCGCATCGCTTTCTCGCCTGGCGCGCATTCG                                                                                          >  SRR4302533.5673593/1‑94 (MQ=60)

  GCTGACGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGC                                                                                         >  SRR4302533.1756488/1‑94 (MQ=60)

   CTGACGAAATTCCCGGCATTGCAGAGCGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCC                                                                                        >  SRR4302533.3435269/1‑94 (MQ=60)

    TGACGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCA                                                                                       >  SRR4302533.2814325/1‑94 (MQ=60)

     GACGACATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCAC                                                                                      >  SRR4302533.509511/1‑94 (MQ=60)

     GACGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCAC                                                                                      <  SRR4302533.1283186/94‑1 (MQ=60)

       CGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTG                                                                                    >  SRR4302533.5113788/1‑94 (MQ=60)

        GAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGG                                                                                   >  SRR4302533.2243282/1‑94 (MQ=60)

        GAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGG                                                                                   <  SRR4302533.733006/94‑1 (MQ=60)

        GAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGG                                                                                   >  SRR4302533.943725/1‑94 (MQ=60)

         AAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGC                                                                                  <  SRR4302533.3336978/94‑1 (MQ=60)

         AAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGC                                                                                  <  SRR4302533.6277731/94‑1 (MQ=60)

         AAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGC                                                                                  <  SRR4302533.4016004/94‑1 (MQ=60)

         AAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGC                                                                                  <  SRR4302533.4513874/94‑1 (MQ=60)

           ATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGC                                                                                >  SRR4302533.492421/1‑94 (MQ=60)

           ATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGC                                                                                >  SRR4302533.1445453/1‑94 (MQ=60)

           ATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGC                                                                                >  SRR4302533.229205/1‑94 (MQ=60)

           ATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGC                                                                                >  SRR4302533.746676/1‑94 (MQ=60)

            TTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCT                                                                               <  SRR4302533.3336441/94‑1 (MQ=60)

            TTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCT                                                                               <  SRR4302533.5639479/94‑1 (MQ=60)

            TTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCT                                                                               <  SRR4302533.1293120/94‑1 (MQ=60)

            TTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCT                                                                               <  SRR4302533.6295901/94‑1 (MQ=60)

            TTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCT                                                                               <  SRR4302533.2201264/94‑1 (MQ=60)

             TCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTG                                                                              <  SRR4302533.6077012/94‑1 (MQ=60)

             TCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTG                                                                              <  SRR4302533.2496433/94‑1 (MQ=60)

             TCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTG                                                                              <  SRR4302533.1189269/94‑1 (MQ=60)

              CCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGG                                                                             >  SRR4302533.3431180/1‑94 (MQ=60)

               CCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGG                                                                            <  SRR4302533.2046781/94‑1 (MQ=60)

               CCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGG                                                                            >  SRR4302533.5711254/1‑94 (MQ=60)

                CGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGC                                                                           <  SRR4302533.514310/94‑1 (MQ=60)

                  GCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGG                                                                         <  SRR4302533.3435272/94‑1 (MQ=60)

                  GCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGG                                                                         <  SRR4302533.4589578/94‑1 (MQ=60)

                   CATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGT                                                                        >  SRR4302533.5992227/1‑94 (MQ=60)

                    ATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTA                                                                       >  SRR4302533.367661/1‑94 (MQ=60)

                    ATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTA                                                                       >  SRR4302533.2334570/1‑94 (MQ=60)

                      TGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATT                                                                     >  SRR4302533.2578574/1‑94 (MQ=60)

                        CAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAG                                                                   <  SRR4302533.6108379/94‑1 (MQ=60)

                        CAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAG                                                                   <  SRR4302533.1547962/94‑1 (MQ=60)

                        CAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAG                                                                   >  SRR4302533.5479639/1‑94 (MQ=60)

                         AGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGC                                                                  >  SRR4302533.1107637/1‑94 (MQ=60)

                         AGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGC                                                                  <  SRR4302533.4331521/94‑1 (MQ=60)

                         AGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGC                                                                  <  SRR4302533.2098193/94‑1 (MQ=60)

                         AGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGC                                                                  >  SRR4302533.140593/1‑94 (MQ=60)

                           AGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGC                                                                <  SRR4302533.1662912/94‑1 (MQ=60)

                            GTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCA                                                               >  SRR4302533.2521880/1‑94 (MQ=60)

                             TGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAA                                                              >  SRR4302533.4327118/1‑94 (MQ=60)

                              GATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAta                                                             >  SRR4302533.6241244/1‑92 (MQ=60)

                               ATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATT                                                            >  SRR4302533.1950425/1‑94 (MQ=60)

                               ATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATT                                                            >  SRR4302533.2070690/1‑94 (MQ=60)

                                TAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTC                                                           >  SRR4302533.3161975/1‑94 (MQ=60)

                                TAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTC                                                           >  SRR4302533.3061574/1‑94 (MQ=60)

                                TAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTC                                                           >  SRR4302533.1401879/1‑94 (MQ=60)

                                TAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTC                                                           >  SRR4302533.3670690/1‑94 (MQ=60)

                                TAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTC                                                           <  SRR4302533.2176960/94‑1 (MQ=60)

                                 AATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCT                                                          <  SRR4302533.4338895/94‑1 (MQ=60)

                                 AATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCT                                                          <  SRR4302533.3683070/94‑1 (MQ=60)

                                 AATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCT                                                          >  SRR4302533.1539358/1‑94 (MQ=60)

                                  ATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTG                                                         >  SRR4302533.2116680/1‑94 (MQ=60)

                                  ATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTG                                                         >  SRR4302533.5900549/1‑94 (MQ=60)

                                    CCCAGTGACGCCAAACAAGGATCGTTCTCCGCAGCGCTTTCTCGCCTGGCGCGCATTCGCCAGTGGCGCTGGGCGGTATTAGCGCAATTCTGCT                                                       <  SRR4302533.1031098/94‑1 (MQ=60)

                                    CACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCT                                                       >  SRR4302533.822402/1‑94 (MQ=60)

                                      CAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTAT                                                     <  SRR4302533.5034112/94‑1 (MQ=60)

                                       AGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATG                                                    <  SRR4302533.5011505/94‑1 (MQ=60)

                                       AGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATG                                                    <  SRR4302533.5313383/94‑1 (MQ=60)

                                       AGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATG                                                    >  SRR4302533.3057462/1‑94 (MQ=60)

                                       AGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATG                                                    >  SRR4302533.3070120/1‑94 (MQ=60)

                                        GTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGT                                                   >  SRR4302533.3353851/1‑94 (MQ=60)

                                        GTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGT                                                   <  SRR4302533.1350973/94‑1 (MQ=60)

                                         TGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTC                                                  <  SRR4302533.2189821/94‑1 (MQ=60)

                                          GACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCG                                                 <  SRR4302533.3248154/94‑1 (MQ=60)

                                          GACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCG                                                 <  SRR4302533.4336020/94‑1 (MQ=60)

                                            CGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGC                                               >  SRR4302533.5519838/1‑94 (MQ=60)

                                             GCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCG                                              >  SRR4302533.5516768/1‑94 (MQ=60)

                                              CCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGC                                             >  SRR4302533.2672368/1‑94 (MQ=60)

                                               CAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCA                                            >  SRR4302533.2931204/1‑94 (MQ=60)

                                               CAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCA                                            >  SRR4302533.5052260/1‑94 (MQ=60)

                                                AAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCAC                                           >  SRR4302533.6091662/1‑94 (MQ=60)

                                                  ACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAA                                         <  SRR4302533.1359056/94‑1 (MQ=60)

                                                   CAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAA                                        >  SRR4302533.5491339/1‑94 (MQ=60)

                                                   CAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAA                                        >  SRR4302533.3231732/1‑94 (MQ=60)

                                                    AAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAAC                                       <  SRR4302533.322342/94‑1 (MQ=60)

                                                    AAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAAC                                       <  SRR4302533.2207550/94‑1 (MQ=60)

                                                     AGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACG                                      <  SRR4302533.3818725/94‑1 (MQ=60)

                                                        ATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCC                                   >  SRR4302533.3973834/1‑94 (MQ=60)

                                                         TCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCT                                  <  SRR4302533.5777495/94‑1 (MQ=60)

                                                         TCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCT                                  <  SRR4302533.3995367/94‑1 (MQ=60)

                                                         TCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCT                                  <  SRR4302533.176005/94‑1 (MQ=60)

                                                          CGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTG                                 <  SRR4302533.948652/94‑1 (MQ=60)

                                                          CGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTG                                 >  SRR4302533.786017/1‑94 (MQ=60)

                                                          CGTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTG                                 >  SRR4302533.5830943/1‑94 (MQ=60)

                                                           GTTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGC                                <  SRR4302533.783588/94‑1 (MQ=60)

                                                            TTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCT                               <  SRR4302533.5038314/94‑1 (MQ=60)

                                                            TTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCT                               <  SRR4302533.1675010/94‑1 (MQ=60)

                                                            TTCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCT                               <  SRR4302533.1737778/94‑1 (MQ=60)

                                                             TCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTG                              <  SRR4302533.5844269/94‑1 (MQ=60)

                                                             TCTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTG                              >  SRR4302533.864168/1‑94 (MQ=60)

                                                              CTCCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGG                             <  SRR4302533.4094733/94‑1 (MQ=60)

                                                                CCGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAG                           <  SRR4302533.3529664/94‑1 (MQ=60)

                                                                 CGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGC                          <  SRR4302533.2066715/94‑1 (MQ=60)

                                                                 CGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGC                          >  SRR4302533.4604497/1‑94 (MQ=60)

                                                                 CGCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGC                          >  SRR4302533.508337/1‑94 (MQ=60)

                                                                  GCATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCT                         <  SRR4302533.4852135/94‑1 (MQ=60)

                                                                    ATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTAT                       >  SRR4302533.250448/1‑94 (MQ=60)

                                                                    ATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTAT                       <  SRR4302533.5518570/94‑1 (MQ=60)

                                                                    ATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTAT                       >  SRR4302533.4498619/1‑94 (MQ=60)

                                                                    ATCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTAT                       >  SRR4302533.4623054/1‑94 (MQ=60)

                                                                     TCGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATT                      <  SRR4302533.800168/94‑1 (MQ=60)

                                                                      CGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTT                     <  SRR4302533.5525026/94‑1 (MQ=60)

                                                                      CGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTT                     <  SRR4302533.3453149/94‑1 (MQ=60)

                                                                      CGCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTT                     >  SRR4302533.3249/1‑94 (MQ=60)

                                                                       GCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTG                    >  SRR4302533.845618/1‑94 (MQ=60)

                                                                       GCTTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTG                    >  SRR4302533.4355912/1‑94 (MQ=60)

                                                                         TTTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGAT                  <  SRR4302533.2314572/94‑1 (MQ=60)

                                                                          TTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATT                 <  SRR4302533.1990368/94‑1 (MQ=60)

                                                                          TTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATT                 <  SRR4302533.5595641/94‑1 (MQ=60)

                                                                          TTCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGATATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATT                 >  SRR4302533.5465210/1‑94 (MQ=60)

                                                                           TCTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTC                >  SRR4302533.1619285/1‑94 (MQ=60)

                                                                            CTCGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCG               <  SRR4302533.5058248/94‑1 (MQ=60)

                                                                              CGCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCT             >  SRR4302533.6318669/1‑94 (MQ=60)

                                                                               GCCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTA            <  SRR4302533.5848723/94‑1 (MQ=60)

                                                                                CCTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTAC           <  SRR4302533.4314548/94‑1 (MQ=60)

                                                                                CCTGGCGCGCATTCGCAACTGGCGCTGGGCGGGATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTAC           >  SRR4302533.555558/1‑94 (MQ=60)

                                                                                 CTGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACG          <  SRR4302533.3324847/94‑1 (MQ=60)

                                                                                  TGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGC         <  SRR4302533.6237920/94‑1 (MQ=60)

                                                                                  TGGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGC         >  SRR4302533.5736068/1‑94 (MQ=60)

                                                                                   GGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGCT        >  SRR4302533.4301727/1‑94 (MQ=60)

                                                                                   GGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGCT        <  SRR4302533.475748/94‑1 (MQ=60)

                                                                                   GGCGCGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGCT        <  SRR4302533.5195183/94‑1 (MQ=60)

                                                                                       CGCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATCTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGCTGTAG    >  SRR4302533.994069/1‑94 (MQ=60)

                                                                                        GCATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGCTGTAGA   >  SRR4302533.1985962/1‑94 (MQ=60)

                                                                                         CATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGCTGTAGAA  <  SRR4302533.3054563/94‑1 (MQ=60)

                                                                                         CATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGCTGTAGAA  >  SRR4302533.710666/1‑94 (MQ=60)

ATGCTGACGAAATTCCCGGCATTGCAGAGTGATAATCACAGTGACGCCAAACAAGGATCGTTCTCCGCATCGCTTTCTCGCCTGGCGCGTATTCGCCACTGGCGCTGGGCGGTATTAGCGCAATTCTGCTATGTCGGCGCACAAACGGCCTGCTGGAGCTATTTGATTCGCTACGCTGTAGAA  >  NC_000913/2932935‑2933117

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`