Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1624	250.6	12620048	98.0%	12367647	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,940,324	G→A	A89V (GCC→GTC)	gcvA ←	GcvA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,940,324	0	G	A	100.0%	968.6 / NA	264	A89V (GCC→GTC)	gcvA	GcvA
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (123/141); total (123/141)

Only 100 of 269 total aligned reads displayed.

GCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGT  >  NC_000913/2940234‑2940413

 ctaaaTTAAAGCTGGAAAGTCGCGGACCCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCt                                                                                        <  2:5721774/90‑1 (MQ=255)

 cTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCt                                                                                        >  2:5511257/1‑93 (MQ=255)

 cTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCt                                                                                        <  1:2178285/93‑1 (MQ=255)

  tGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTg                                                                                       <  1:6302743/93‑1 (MQ=255)

   gAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTgg                                                                                      >  1:4006489/1‑93 (MQ=255)

    aaTTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGa                                                                                     >  2:6138605/1‑93 (MQ=255)

      ttAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGt                                                                                   >  2:4050764/1‑93 (MQ=255)

           gCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTAcg                                                                              <  1:4246551/93‑1 (MQ=255)

              ggAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGt                                                                           <  1:3834172/93‑1 (MQ=255)

                aaaGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCg                                                                         >  2:1619655/1‑93 (MQ=255)

                  aGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCt                                                                       <  1:5778252/93‑1 (MQ=255)

                    tCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTc                                                                     >  1:5521629/1‑93 (MQ=255)

                    tCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTc                                                                     >  2:3471409/1‑93 (MQ=255)

                     cgcgGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCg                                                                    >  2:3916094/1‑93 (MQ=255)

                      gcgGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCgg                                                                   <  1:4887660/93‑1 (MQ=255)

                      gcgGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCgg                                                                   >  2:912122/1‑93 (MQ=255)

                       cgGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGAACTGGAGTTTACGCGTCGCTTCGGt                                                                  >  2:2219672/1‑93 (MQ=255)

                          aaccaaccAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTaa                                                               <  1:2101346/93‑1 (MQ=255)

                          aaccaaccAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCT‑GAGTTTAACGGTCGCTTCGGTTAAt                                                              >  1:1071554/1‑93 (MQ=255)

                           accaaccaATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAAt                                                              <  2:3240826/93‑1 (MQ=255)

                            ccaaccaaTGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAAtt                                                             <  2:5941997/93‑1 (MQ=255)

                            ccaaccaaTGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAAtt                                                             >  1:5351549/1‑93 (MQ=255)

                            ccaaccaaTGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAAtt                                                             <  2:4033617/93‑1 (MQ=255)

                             caaccaaTGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTg                                                            <  1:4087627/93‑1 (MQ=255)

                              aaccaaTGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGc                                                           >  1:3174835/1‑93 (MQ=255)

                              aaccaaTGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGc                                                           <  1:1409833/93‑1 (MQ=255)

                                ccaaTGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGa                                                         >  2:4984429/1‑93 (MQ=255)

                                  aatgaatgGCGAACCTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCACTTCGGTTAATTGCGaaa                                                       <  1:4381776/93‑1 (MQ=255)

                                  aatgaatgGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGaaa                                                       >  1:6066671/1‑93 (MQ=255)

                                   atgaatgGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGaaaa                                                      <  2:22572/93‑1 (MQ=255)

                                   atgaatgGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGaaaa                                                      <  1:5322857/93‑1 (MQ=255)

                                   atgaatgGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGaaaa                                                      >  1:926196/1‑93 (MQ=255)

                                    tgaatgGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAat                                                     <  2:4942302/93‑1 (MQ=255)

                                    tgaatgGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAat                                                     <  1:344835/93‑1 (MQ=255)

                                     gaatgGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAata                                                    <  2:4351916/93‑1 (MQ=255)

                                     gaatgGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGGTTACGCGTCGCTTCGGTTAATTGCGAAAata                                                    >  1:297122/1‑93 (MQ=255)

                                      aatgGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAatat                                                   <  2:2607843/93‑1 (MQ=255)

                                       atgGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATAtc                                                  <  2:1908620/93‑1 (MQ=255)

                                       atgGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATAtc                                                  <  2:1635886/93‑1 (MQ=255)

                                        tgGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATAtct                                                 <  1:3352889/93‑1 (MQ=255)

                                         ggCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATAtctc                                                <  1:5636043/93‑1 (MQ=255)

                                         ggCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATAtctc                                                <  2:2650727/93‑1 (MQ=255)

                                          gCGAAACTGGGGAGTAAACTGACAGTCAACGCCCGCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATctct                                               <  2:1034986/93‑1 (MQ=255)

                                           cGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCtt                                              <  1:1376803/93‑1 (MQ=255)

                                            gAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCttt                                             <  2:18072/93‑1 (MQ=255)

                                            gAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCttt                                             <  2:5148340/93‑1 (MQ=255)

                                            gAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCttt                                             <  1:6020802/93‑1 (MQ=255)

                                             aaaCTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTg                                            >  1:3722979/1‑93 (MQ=255)

                                             aaaCTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTg                                            >  1:2873895/1‑93 (MQ=255)

                                              aaCTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGa                                           <  1:1627896/93‑1 (MQ=255)

                                                cTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGata                                         <  1:852938/93‑1 (MQ=255)

                                                cTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGata                                         <  2:3128444/93‑1 (MQ=255)

                                                cTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGata                                         <  1:5939998/93‑1 (MQ=255)

                                                 tGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGatat                                        >  2:3738609/1‑93 (MQ=255)

                                                 tGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGatat                                        <  1:1646121/93‑1 (MQ=255)

                                                 tGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGatat                                        <  1:1026412/93‑1 (MQ=255)

                                                  ggggAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATc                                       >  2:1113323/1‑93 (MQ=255)

                                                  ggggAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATc                                       >  2:2133481/1‑93 (MQ=255)

                                                  ggggAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATc                                       <  1:4775551/93‑1 (MQ=255)

                                                   gggAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCg                                      <  1:2587426/93‑1 (MQ=255)

                                                   gggAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCg                                      >  1:2465717/1‑93 (MQ=255)

                                                    gaaGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGa                                     <  2:6269332/91‑1 (MQ=255)

                                                     gAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAg                                    <  1:4439813/93‑1 (MQ=255)

                                                      aGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAgg                                   >  1:579945/1‑93 (MQ=255)

                                                       gTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGa                                  <  1:4542718/93‑1 (MQ=255)

                                                       gTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGa                                  <  1:5432648/93‑1 (MQ=255)

                                                          aaCTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAAt                               >  2:428899/1‑93 (MQ=255)

                                                           aCTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATa                              >  2:139467/1‑93 (MQ=255)

                                                           aCTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATa                              <  1:3606982/93‑1 (MQ=255)

                                                             tGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGc                            <  2:2930166/93‑1 (MQ=255)

                                                              gACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCt                           <  2:5934073/93‑1 (MQ=255)

                                                              gACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCt                           >  2:4758471/1‑93 (MQ=255)

                                                               aCCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCtt                          >  1:1762437/1‑93 (MQ=255)

                                                                ccGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCttt                         >  2:5602782/1‑93 (MQ=255)

                                                                ccGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCttt                         <  1:5139319/93‑1 (MQ=255)

                                                                ccGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCttt                         >  1:1913913/1‑93 (MQ=255)

                                                                ccGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCttt                         <  2:3665273/93‑1 (MQ=255)

                                                                 cGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTg                        <  2:5175139/93‑1 (MQ=255)

                                                                  gTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGc                       >  2:762325/1‑93 (MQ=255)

                                                                      aCGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCtt                   >  2:4192821/1‑93 (MQ=255)

                                                                        gCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTcc                 >  2:239130/1‑93 (MQ=255)

                                                                        gCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTcc                 <  2:1198969/93‑1 (MQ=255)

                                                                        gCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTcc                 <  2:4792901/93‑1 (MQ=255)

                                                                        gCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTcc                 >  2:745621/1‑93 (MQ=255)

                                                                         cccccTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCt                <  1:873064/93‑1 (MQ=255)

                                                                          ccccTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTc               >  2:4884376/1‑93 (MQ=255)

                                                                          ccccTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTc               >  1:6222160/1‑93 (MQ=255)

                                                                          ccccTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTc               <  1:1196213/93‑1 (MQ=255)

                                                                          ccccTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTc               >  2:426695/1‑93 (MQ=255)

                                                                           cccTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCg              <  2:303373/93‑1 (MQ=255)

                                                                            ccTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCgg             >  2:4657358/1‑93 (MQ=255)

                                                                            ccTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCgg             <  2:5356583/93‑1 (MQ=255)

                                                                             cTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGt            >  1:5499494/1‑93 (MQ=255)

                                                                             cTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGt            >  1:1522349/1‑93 (MQ=255)

                                                                                  cgcTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTcagca       <  1:2653842/93‑1 (MQ=255)

                                                                                   gcTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTcagcag      >  2:1432219/1‑93 (MQ=255)

                                                                                    cTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAgg     >  2:4710411/1‑93 (MQ=255)

                                                                                     tACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAggg    >  1:1943891/1‑92 (MQ=255)

                                                                                     tACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGa    >  1:2259942/1‑93 (MQ=255)

                                                                                     tACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGa    <  1:2358478/93‑1 (MQ=255)

GCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGT  >  NC_000913/2940234‑2940413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAAC  >  NC_000913/2940231‑2940417

TAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGA                                                                                               >  SRR4302533.5984988/1‑94 (MQ=60)

TAAGCTGAATTAAAGCTGGAAAGACGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGA                                                                                               >  SRR4302533.5984989/1‑94 (MQ=60)

 AAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGAC                                                                                              <  SRR4302533.6172057/94‑1 (MQ=60)

 AAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGAC                                                                                              >  SRR4302533.5281768/1‑94 (MQ=60)

   GCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCT                                                                                            <  SRR4302533.410802/94‑1 (MQ=60)

    CTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTG                                                                                           <  SRR4302533.2191713/94‑1 (MQ=60)

     TGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGG                                                                                          >  SRR4302533.637230/1‑94 (MQ=60)

     TGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGG                                                                                          <  SRR4302533.6340400/94‑1 (MQ=60)

     TGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGG                                                                                          >  SRR4302533.6287591/1‑94 (MQ=60)

     TGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGG                                                                                          >  SRR4302533.5892710/1‑94 (MQ=60)

     TGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGG                                                                                          >  SRR4302533.4030882/1‑94 (MQ=60)

      GAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGA                                                                                         <  SRR4302533.2578144/94‑1 (MQ=60)

       AATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAG                                                                                        <  SRR4302533.903136/94‑1 (MQ=60)

       AATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAG                                                                                        <  SRR4302533.3837355/94‑1 (MQ=60)

        ATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGT                                                                                       >  SRR4302533.999045/1‑94 (MQ=60)

        ATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGT                                                                                       >  SRR4302533.6272908/1‑94 (MQ=60)

            AAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTAC                                                                                   <  SRR4302533.4535668/94‑1 (MQ=60)

             AGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACG                                                                                  >  SRR4302533.5815226/1‑94 (MQ=60)

              GCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGC                                                                                 <  SRR4302533.4474556/94‑1 (MQ=60)

              GCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGC                                                                                 <  SRR4302533.4272184/94‑1 (MQ=60)

                 GGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTC                                                                              <  SRR4302533.3857603/94‑1 (MQ=60)

                   AAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGC                                                                            >  SRR4302533.1580718/1‑94 (MQ=60)

                   AAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGC                                                                            >  SRR4302533.5468479/1‑94 (MQ=60)

                    AAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCT                                                                           <  SRR4302533.5544993/94‑1 (MQ=60)

                     AGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTT                                                                          <  SRR4302533.5813153/94‑1 (MQ=60)

                      GTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTC                                                                         >  SRR4302533.5554966/1‑94 (MQ=60)

                       TCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCG                                                                        <  SRR4302533.1219791/94‑1 (MQ=60)

                       TCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCG                                                                        <  SRR4302533.5236913/94‑1 (MQ=60)

                         GCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGT                                                                      <  SRR4302533.4917274/94‑1 (MQ=60)

                         GCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGT                                                                      <  SRR4302533.5475340/94‑1 (MQ=60)

                          CGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTT                                                                     >  SRR4302533.2655035/1‑94 (MQ=60)

                           GGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTA                                                                    >  SRR4302533.4205752/1‑94 (MQ=60)

                            GAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAA                                                                   >  SRR4302533.1095123/1‑94 (MQ=60)

                            GAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCT‑GAGTTTAACGGTCGCTTCGGTTAAT                                                                  >  SRR4302533.1077868/1‑94 (MQ=60)

                             AACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAAT                                                                  <  SRR4302533.2114305/94‑1 (MQ=60)

                             AACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAAT                                                                  <  SRR4302533.5389510/94‑1 (MQ=60)

                              ACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATT                                                                 >  SRR4302533.5383660/1‑94 (MQ=60)

                               CCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTG                                                                <  SRR4302533.3640786/94‑1 (MQ=60)

                               CCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTG                                                                <  SRR4302533.1569314/94‑1 (MQ=60)

                                CAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGC                                                               >  SRR4302533.3194369/1‑94 (MQ=60)

                                CAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGC                                                               <  SRR4302533.4112511/94‑1 (MQ=60)

                                 AGCCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCG                                                              <  SRR4302533.429250/94‑1 (MQ=60)

                                 AACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCG                                                              <  SRR4302533.1418356/94‑1 (MQ=60)

                                 AACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCG                                                              >  SRR4302533.3346502/1‑94 (MQ=60)

                                 AACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCG                                                              <  SRR4302533.4409374/94‑1 (MQ=60)

                                 AACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCG                                                              <  SRR4302533.20463/94‑1 (MQ=60)

                                 AACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCG                                                              >  SRR4302533.1828293/1‑94 (MQ=60)

                                  ACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGA                                                             >  SRR4302533.3413496/1‑94 (MQ=60)

                                    CAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAA                                                           >  SRR4302533.6103386/1‑94 (MQ=60)

                                    CAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAA                                                           >  SRR4302533.5418390/1‑94 (MQ=60)

                                     AATGAATGGCGAACCTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCACTTCGGTTAATTGCGAAAA                                                          <  SRR4302533.4408232/94‑1 (MQ=60)

                                     AATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAA                                                          >  SRR4302533.2593386/1‑94 (MQ=60)

                                     AATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAA                                                          >  SRR4302533.931631/1‑94 (MQ=60)

                                      ATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAAT                                                         <  SRR4302533.1122716/94‑1 (MQ=60)

                                      ATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAAT                                                         <  SRR4302533.5202798/94‑1 (MQ=60)

                                      ATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAAT                                                         <  SRR4302533.5354755/94‑1 (MQ=60)

                                      ATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAAT                                                         <  SRR4302533.1645344/94‑1 (MQ=60)

                                       TGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGGGTTTACGCGTCGCTTCGGTTAATTGCGAAAATA                                                        >  SRR4302533.1330350/1‑94 (MQ=60)

                                       TGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATA                                                        <  SRR4302533.346944/94‑1 (MQ=60)

                                       TGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATA                                                        >  SRR4302533.4135438/1‑94 (MQ=60)

                                       TGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGGTTACGCGTCGCTTCGGTTAATTGCGAAAATA                                                        >  SRR4302533.298942/1‑94 (MQ=60)

                                        GAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATAT                                                       <  SRR4302533.1459854/94‑1 (MQ=60)

                                          ATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCT                                                     <  SRR4302533.192999/94‑1 (MQ=60)

                                          ATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCT                                                     <  SRR4302533.2966245/94‑1 (MQ=60)

                                          ATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCT                                                     >  SRR4302533.3674558/1‑94 (MQ=60)

                                           TGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTC                                                    <  SRR4302533.3373603/94‑1 (MQ=60)

                                            GGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCT                                                   <  SRR4302533.5670125/94‑1 (MQ=60)

                                              CGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTT                                                 <  SRR4302533.1385086/94‑1 (MQ=60)

                                              CGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTT                                                 >  SRR4302533.6066720/1‑94 (MQ=60)

                                               GAAACTGGGGAGTAAACTGACCGTCAACGTCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTG                                                <  SRR4302533.21154/94‑1 (MQ=60)

                                               GAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTG                                                >  SRR4302533.3745823/1‑94 (MQ=60)

                                               GAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTG                                                >  SRR4302533.2891577/1‑94 (MQ=60)

                                               GAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTG                                                <  SRR4302533.6057286/94‑1 (MQ=60)

                                               GAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTG                                                <  SRR4302533.2183323/94‑1 (MQ=60)

                                                 AACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGAT                                              <  SRR4302533.4786886/94‑1 (MQ=60)

                                                 AACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGAT                                              <  SRR4302533.1637755/94‑1 (MQ=60)

                                                   CTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATAT                                            <  SRR4302533.2257662/94‑1 (MQ=60)

                                                   CTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATAT                                            >  SRR4302533.5369388/1‑94 (MQ=60)

                                                   CTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATAT                                            <  SRR4302533.5975913/94‑1 (MQ=60)

                                                   CTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATAT                                            <  SRR4302533.857931/94‑1 (MQ=60)

                                                   CTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATAT                                            >  SRR4302533.2867481/1‑94 (MQ=60)

                                                   CTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATAT                                            <  SRR4302533.5021875/94‑1 (MQ=60)

                                                    TGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATC                                           <  SRR4302533.4878103/94‑1 (MQ=60)

                                                    TGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATC                                           <  SRR4302533.1032443/94‑1 (MQ=60)

                                                    TGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATC                                           <  SRR4302533.1656088/94‑1 (MQ=60)

                                                    TGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATC                                           <  SRR4302533.1878569/94‑1 (MQ=60)

                                                     GGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCG                                          >  SRR4302533.2480927/1‑94 (MQ=60)

                                                     GGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCG                                          <  SRR4302533.913145/94‑1 (MQ=60)

                                                     GGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCG                                          >  SRR4302533.1042201/1‑94 (MQ=60)

                                                     GGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCG                                          <  SRR4302533.4804483/94‑1 (MQ=60)

                                                      GGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGA                                         <  SRR4302533.2603333/94‑1 (MQ=60)

                                                      GGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGA                                         >  SRR4302533.5806823/1‑94 (MQ=60)

                                                      GGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGA                                         >  SRR4302533.280075/1‑94 (MQ=60)

                                                        GAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGG                                       <  SRR4302533.4466650/94‑1 (MQ=60)

                                                        GAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGG                                       >  SRR4302533.583360/1‑94 (MQ=60)

                                                          GTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAA                                     <  SRR4302533.4570228/94‑1 (MQ=60)

                                                          GTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAA                                     <  SRR4302533.5465365/94‑1 (MQ=60)

                                                           TAAACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAA                                    <  SRR4302533.152499/94‑1 (MQ=60)

                                                             AACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGTGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATA                                  <  SRR4302533.5921073/94‑1 (MQ=60)

                                                             AACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATA                                  <  SRR4302533.2100495/94‑1 (MQ=60)

                                                             AACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATA                                  <  SRR4302533.3581954/94‑1 (MQ=60)

                                                              ACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAG                                 <  SRR4302533.2957719/94‑1 (MQ=60)

                                                              ACTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAG                                 <  SRR4302533.3629187/94‑1 (MQ=60)

                                                               CTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGC                                >  SRR4302533.3374314/1‑94 (MQ=60)

                                                               CTGACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGC                                <  SRR4302533.859604/94‑1 (MQ=60)

                                                                 GACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTT                              >  SRR4302533.1773174/1‑94 (MQ=60)

                                                                 GACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTT                              <  SRR4302533.5605019/94‑1 (MQ=60)

                                                                  ACCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTT                             >  SRR4302533.1925592/1‑94 (MQ=60)

                                                                   CCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTG                            >  SRR4302533.2378991/1‑94 (MQ=60)

                                                                   CCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTG                            <  SRR4302533.6013560/94‑1 (MQ=60)

                                                                   CCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTG                            <  SRR4302533.6231392/94‑1 (MQ=60)

                                                                   CCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTG                            <  SRR4302533.4999756/94‑1 (MQ=60)

                                                                   CCGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTG                            <  SRR4302533.5170380/94‑1 (MQ=60)

                                                                    CGTCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGC                           >  SRR4302533.3817642/1‑94 (MQ=60)

                                                                      TCAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCC                         >  SRR4302533.5720085/1‑94 (MQ=60)

                                                                       CAACGCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCT                        <  SRR4302533.4374084/94‑1 (MQ=60)

                                                                           GCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCT                    >  SRR4302533.5574183/1‑94 (MQ=60)

                                                                           GCCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCT                    <  SRR4302533.2321234/94‑1 (MQ=60)

                                                                            CCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTC                   <  SRR4302533.878192/94‑1 (MQ=60)

                                                                            CCCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTC                   >  SRR4302533.6259453/1‑94 (MQ=60)

                                                                            CCCCCTTGGAGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTC                   >  SRR4302533.1683337/1‑94 (MQ=60)

                                                                             CCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCG                  >  SRR4302533.1661146/1‑94 (MQ=60)

                                                                             CCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCG                  <  SRR4302533.600132/94‑1 (MQ=60)

                                                                             CCCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCG                  <  SRR4302533.1203401/94‑1 (MQ=60)

                                                                              CCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGG                 >  SRR4302533.711543/1‑94 (MQ=60)

                                                                              CCCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGG                 >  SRR4302533.3331174/1‑94 (MQ=60)

                                                                               CCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGT                >  SRR4302533.1531513/1‑94 (MQ=60)

                                                                               CCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGT                >  SRR4302533.5532667/1‑94 (MQ=60)

                                                                               CCTTGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGT                <  SRR4302533.2422031/94‑1 (MQ=60)

                                                                                  TGGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAG             <  SRR4302533.942720/94‑1 (MQ=60)

                                                                                   GGCGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGACAGC            >  SRR4302533.3996451/1‑94 (MQ=60)

                                                                                     CGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAG          <  SRR4302533.2670143/94‑1 (MQ=60)

                                                                                     CGCTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAG          >  SRR4302533.6080534/1‑94 (MQ=60)

                                                                                       CTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGG        >  SRR4302533.1955748/1‑94 (MQ=60)

                                                                                       CTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGA        >  SRR4302533.2273923/1‑94 (MQ=60)

                                                                                       CTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGA        <  SRR4302533.4112369/94‑1 (MQ=60)

                                                                                       CTACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGA        >  SRR4302533.4628270/1‑94 (MQ=60)

                                                                                        TACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAG       <  SRR4302533.2373053/94‑1 (MQ=60)

                                                                                         ACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGT      <  SRR4302533.1398532/94‑1 (MQ=60)

                                                                                         ACGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGT      <  SRR4302533.2280343/94‑1 (MQ=60)

                                                                                          CGGACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTG     <  SRR4302533.3089755/94‑1 (MQ=60)

                                                                                            GACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAA   <  SRR4302533.2959160/94‑1 (MQ=60)

                                                                                            GACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAA   >  SRR4302533.2905859/1‑94 (MQ=60)

                                                                                            GACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAA   <  SRR4302533.1266109/94‑1 (MQ=60)

                                                                                            GACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAA   >  SRR4302533.978237/1‑94 (MQ=60)

                                                                                             ACCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAAC  <  SRR4302533.3278893/94‑1 (MQ=60)

TAAGCTGAATTAAAGCTGGAAAGTCGCGGAACCAACCAATGAATGGCGAAACTGGGGAGTAAACTGACCGTCAACGCCCCCTTGGCGCTACGGGCCTGGAGTTTACGCGTCGCTTCGGTTAATTGCGAAAATATCTCTTTGATATCGAGGAAATAGCTTTGCCCTTCCTCGGTCAGCAGGAGTGAAC  >  NC_000913/2940231‑2940417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`