Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1624 250.6 12620048 98.0% 12367647 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,947,355 T→C M31T (ATG→ACG)  argA → N‑acetylglutamate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,947,3550TC100.0% 794.3 / NA 242M31T (ATG→ACG) argAN‑acetylglutamate synthase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (106/136);  total (106/136)

Only 100 of 255 total aligned reads displayed.

TGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGG  >  NC_000913/2947265‑2947444
                                                                                          |                                                                                         
tGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGc                                                                                         >  2:4411357/1‑93 (MQ=255)
tGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGc                                                                                         >  2:5833854/1‑93 (MQ=255)
tGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGc                                                                                         >  1:2315987/1‑93 (MQ=255)
tGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGc                                                                                         >  1:2022425/1‑93 (MQ=255)
 ggTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCt                                                                                        <  2:1817363/93‑1 (MQ=255)
  gTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTc                                                                                       <  1:3259788/93‑1 (MQ=255)
  gTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTc                                                                                       <  2:5565543/93‑1 (MQ=255)
   tAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTcg                                                                                      >  2:1038828/1‑93 (MQ=255)
   tAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTcg                                                                                      >  2:2788073/1‑93 (MQ=255)
    aaaGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTcgg                                                                                     >  1:4395621/1‑93 (MQ=255)
    aaaGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTcgg                                                                                     >  1:5236355/1‑93 (MQ=255)
          aCGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGGGa                                                                               >  1:817890/1‑93 (MQ=255)
           cGTAAAGCCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGGCATCACGCTCGGCGGTGaa                                                                              <  2:6145745/93‑1 (MQ=255)
           cGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGaa                                                                              >  2:3411304/1‑93 (MQ=255)
               aaaCCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCa                                                                          <  1:4275572/93‑1 (MQ=255)
                 aCCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCAtt                                                                        >  1:2635674/1‑93 (MQ=255)
                 aCCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCAtt                                                                        <  2:1960020/93‑1 (MQ=255)
                  ccGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTg                                                                       <  2:2345602/93‑1 (MQ=255)
                  ccGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTg                                                                       <  2:1360630/93‑1 (MQ=255)
                  ccGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTg                                                                       <  1:401056/93‑1 (MQ=255)
                  ccGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTg                                                                       <  1:1451735/93‑1 (MQ=255)
                   cGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGa                                                                      <  1:6022035/93‑1 (MQ=255)
                     aGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGc                                                                    <  2:4484363/93‑1 (MQ=255)
                     aGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGc                                                                    <  2:576450/93‑1 (MQ=255)
                       ttGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCAt                                                                  <  2:5684800/93‑1 (MQ=255)
                        tGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATg                                                                 <  1:2998694/93‑1 (MQ=255)
                        tGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATg                                                                 <  1:250030/93‑1 (MQ=255)
                        tGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATg                                                                 <  2:2635586/93‑1 (MQ=255)
                         tgTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATga                                                                <  2:5588595/92‑1 (MQ=255)
                         ggTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATga                                                                <  2:3644657/93‑1 (MQ=255)
                          gTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATgag                                                               <  1:6238801/93‑1 (MQ=255)
                                ggATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTtc                                                         <  2:3730850/93‑1 (MQ=255)
                                ggATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTGGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTtc                                                         <  1:3387859/93‑1 (MQ=255)
                                   ttCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTcc                                                      >  1:3649638/1‑93 (MQ=255)
                                    tCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCa                                                     <  1:1061792/93‑1 (MQ=255)
                                      cGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGt                                                   <  2:3013349/93‑1 (MQ=255)
                                       gCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTa                                                  <  1:5971910/93‑1 (MQ=255)
                                        ccATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTAt                                                 >  2:2099036/1‑93 (MQ=255)
                                        ccATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTAt                                                 <  1:3424128/93‑1 (MQ=255)
                                        ccATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTAt                                                 <  2:6098407/93‑1 (MQ=255)
                                        ccATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTAt                                                 >  1:1419886/1‑93 (MQ=255)
                                         cATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATc                                                >  1:1150710/1‑93 (MQ=255)
                                          aTTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCg                                               >  1:4881047/1‑93 (MQ=255)
                                             cGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTa                                            <  2:3933352/93‑1 (MQ=255)
                                             cGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTa                                            >  2:4309562/1‑93 (MQ=255)
                                             cGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTa                                            >  1:78221/1‑93 (MQ=255)
                                              ggTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTaa                                           >  1:2488670/1‑93 (MQ=255)
                                              ggTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTaa                                           <  1:4344381/93‑1 (MQ=255)
                                                ttCCCTATATCAATACCTACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATg                                         >  2:1795905/1‑93 (MQ=255)
                                                   ccTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGata                                      <  1:4753787/93‑1 (MQ=255)
                                                    cTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGatat                                     >  1:2576390/1‑93 (MQ=255)
                                                     tataTCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATc                                    >  1:5212754/1‑93 (MQ=255)
                                                     tataTCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATc                                    <  1:2975078/93‑1 (MQ=255)
                                                     tataTCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATc                                    <  2:4021292/93‑1 (MQ=255)
                                                      atatCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCg                                   <  2:3446718/93‑1 (MQ=255)
                                                        atCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCggg                                 >  2:6249517/1‑93 (MQ=255)
                                                            aTACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGgttgt                             <  2:4283350/93‑1 (MQ=255)
                                                             tACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGgttgtt                            >  1:5512313/1‑93 (MQ=255)
                                                             tACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGgttgtt                            <  1:3696714/93‑1 (MQ=255)
                                                               cccACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGc                          <  1:3072567/93‑1 (MQ=255)
                                                                 cACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGcac                        >  2:5295939/1‑93 (MQ=255)
                                                                  aCCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGcaca                       >  2:4708636/1‑93 (MQ=255)
                                                                  aCCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGcaca                       <  1:1839326/93‑1 (MQ=255)
                                                                  aCCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGcaca                       <  1:94048/93‑1 (MQ=255)
                                                                  aCCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGcaca                       >  2:295472/1‑93 (MQ=255)
                                                                  aCCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGcaca                       >  1:3449149/1‑93 (MQ=255)
                                                                   ccGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAg                      <  1:4459084/93‑1 (MQ=255)
                                                                   ccGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAg                      >  2:4396012/1‑93 (MQ=255)
                                                                    cGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGc                     <  2:2371595/93‑1 (MQ=255)
                                                                     ggggAAAAACGTTTGTCATCACGCTCGTCGGTGAAGCCATTGAGCATGAGTATTTATCCAGCATCGTTAATGATATAGTGTTGTTGCACAccc                    >  2:4917643/1‑93 (MQ=255)
                                                                     ggggAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGcc                    <  2:2202543/93‑1 (MQ=255)
                                                                      gggAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCt                   <  2:3827672/93‑1 (MQ=255)
                                                                      gggAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCt                   >  2:1147442/1‑93 (MQ=255)
                                                                      gggAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCt                   <  1:45877/93‑1 (MQ=255)
                                                                       ggAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTc                  <  1:4749123/93‑1 (MQ=255)
                                                                        gAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCg                 <  1:5850767/93‑1 (MQ=255)
                                                                          aaaaCGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGc               <  1:3541155/93‑1 (MQ=255)
                                                                          aaaaCGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGc               >  1:4926368/1‑93 (MQ=255)
                                                                          aaaaCGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGc               >  2:4229503/1‑93 (MQ=255)
                                                                          aaaaCGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGc               >  1:4187830/1‑93 (MQ=255)
                                                                           aaaCGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCa              >  2:1416735/1‑93 (MQ=255)
                                                                           aaaCGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCa              <  1:5449500/93‑1 (MQ=255)
                                                                             aCGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATc            >  1:2079446/1‑93 (MQ=255)
                                                                             aCGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATc            <  1:5025487/93‑1 (MQ=255)
                                                                             aCGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATc            <  2:5448523/93‑1 (MQ=255)
                                                                              cGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATcc           <  2:5964763/93‑1 (MQ=255)
                                                                              cGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGATGTTGCACAGCCTCGGCATcc           >  1:6078665/1‑93 (MQ=255)
                                                                                tttGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGt         >  1:3842327/1‑93 (MQ=255)
                                                                                 ttGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTc        <  2:3596315/93‑1 (MQ=255)
                                                                                  tGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCt       <  2:2405340/93‑1 (MQ=255)
                                                                                   gTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCtg      >  1:279828/1‑93 (MQ=255)
                                                                                    tcatcaCGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCtgg     <  2:5096634/93‑1 (MQ=255)
                                                                                    tcatcaCGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCtgg     <  2:3573423/93‑1 (MQ=255)
                                                                                     catcacGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCtggt    <  1:164439/93‑1 (MQ=255)
                                                                                     catcacGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCtggt    >  1:1575824/1‑93 (MQ=255)
                                                                                     catcacGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCCGCATCCGTCtggt    >  2:483777/1‑93 (MQ=255)
                                                                                     catcacGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGGTGTTGCACAGCCTCGGCATCCGTCtggt    >  1:1785142/1‑93 (MQ=255)
                                                                                      atcacGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCtggtg   <  1:2791736/93‑1 (MQ=255)
                                                                                       tcacGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCtggtgg  <  2:2270922/93‑1 (MQ=255)
                                                                                       tcacGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCtggtgg  <  1:5693680/93‑1 (MQ=255)
                                                                                          |                                                                                         
TGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGG  >  NC_000913/2947265‑2947444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGT  >  NC_000913/2947263‑2947448
                                                                                            |                                                                                             
CGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACG                                                                                              >  SRR4302533.3748700/1‑94 (MQ=60)
 GTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGC                                                                                             >  SRR4302533.2330328/1‑94 (MQ=60)
 GTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGC                                                                                             >  SRR4302533.3917903/1‑94 (MQ=60)
 GTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGC                                                                                             >  SRR4302533.2034880/1‑94 (MQ=60)
   GGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTC                                                                                           <  SRR4302533.2637354/94‑1 (MQ=60)
    GTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCG                                                                                          <  SRR4302533.3279896/94‑1 (MQ=60)
     TAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGGAAAACGTTTGTCATCACGCTCGG                                                                                         >  SRR4302533.2798432/1‑94 (MQ=60)
     TAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGG                                                                                         >  SRR4302533.4422159/1‑94 (MQ=60)
     TAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGG                                                                                         >  SRR4302533.4276975/1‑94 (MQ=60)
     TAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGG                                                                                         >  SRR4302533.5267840/1‑94 (MQ=60)
      AAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGC                                                                                        >  SRR4302533.3559474/1‑94 (MQ=60)
      AAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGC                                                                                        <  SRR4302533.219792/94‑1 (MQ=60)
       AAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCG                                                                                       >  SRR4302533.3390499/1‑94 (MQ=60)
        AGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGG                                                                                      >  SRR4302533.5156877/1‑94 (MQ=60)
           AACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGA                                                                                   <  SRR4302533.5514094/94‑1 (MQ=60)
           AACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGA                                                                                   >  SRR4302533.1461839/1‑94 (MQ=60)
           AACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGGGA                                                                                   >  SRR4302533.822680/1‑94 (MQ=60)
              GTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGC                                                                                <  SRR4302533.5361538/94‑1 (MQ=60)
                 AAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCAT                                                                             >  SRR4302533.2477399/1‑94 (MQ=60)
                 AAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCAT                                                                             <  SRR4302533.4301291/94‑1 (MQ=60)
                 AAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCAT                                                                             <  SRR4302533.3615027/94‑1 (MQ=60)
                 AAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCAT                                                                             >  SRR4302533.2536532/1‑94 (MQ=60)
                  AACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATT                                                                            <  SRR4302533.3415828/94‑1 (MQ=60)
                  AACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATT                                                                            >  SRR4302533.3426369/1‑94 (MQ=60)
                  AACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATT                                                                            <  SRR4302533.6080508/94‑1 (MQ=60)
                  AACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATT                                                                            >  SRR4302533.197046/1‑94 (MQ=60)
                  AACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATT                                                                            >  SRR4302533.2651871/1‑94 (MQ=60)
                  AACCGAGTTGGACGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATT                                                                            <  SRR4302533.5018144/94‑1 (MQ=60)
                   ACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTG                                                                           <  SRR4302533.4623123/94‑1 (MQ=60)
                    CCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGA                                                                          <  SRR4302533.1460495/94‑1 (MQ=60)
                    CCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGA                                                                          <  SRR4302533.403475/94‑1 (MQ=60)
                    CCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGA                                                                          <  SRR4302533.3007500/94‑1 (MQ=60)
                     CGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAG                                                                         <  SRR4302533.3237300/94‑1 (MQ=60)
                     CGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAG                                                                         <  SRR4302533.5873175/94‑1 (MQ=60)
                     CGAGTTGGTAGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAG                                                                         <  SRR4302533.6058531/94‑1 (MQ=60)
                     CGAGTGGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGATGAAGCCATTGAG                                                                         <  SRR4302533.2840571/94‑1 (MQ=60)
                       AGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCA                                                                       <  SRR4302533.705721/94‑1 (MQ=60)
                        GTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCAT                                                                      <  SRR4302533.1589881/94‑1 (MQ=60)
                         TTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATG                                                                     <  SRR4302533.4205131/94‑1 (MQ=60)
                          TGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGA                                                                    <  SRR4302533.4781128/94‑1 (MQ=60)
                          TGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGA                                                                    <  SRR4302533.3017032/94‑1 (MQ=60)
                          TGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGA                                                                    <  SRR4302533.251573/94‑1 (MQ=60)
                           GGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAG                                                                   <  SRR4302533.4418229/94‑1 (MQ=60)
                            GTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGA                                                                  <  SRR4302533.6276162/94‑1 (MQ=60)
                             TCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAA                                                                 <  SRR4302533.6179038/94‑1 (MQ=60)
                             GCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAA                                                                 <  SRR4302533.2898784/94‑1 (MQ=60)
                                 GGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGTCGGTGAAGCCATTGAGCATGAGAATTTC                                                             >  SRR4302533.2735107/1‑94 (MQ=60)
                                  GGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCT                                                            <  SRR4302533.3672606/94‑1 (MQ=60)
                                  GGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTGGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCT                                                            <  SRR4302533.3408778/94‑1 (MQ=60)
                                    ATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCC                                                          >  SRR4302533.4454294/1‑94 (MQ=60)
                                    ATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCC                                                          >  SRR4302533.3672077/1‑94 (MQ=60)
                                     TTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCA                                                         <  SRR4302533.793060/94‑1 (MQ=60)
                                      TCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAG                                                        <  SRR4302533.1068030/94‑1 (MQ=60)
                                      TCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAG                                                        <  SRR4302533.509892/94‑1 (MQ=60)
                                       CCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGT                                                       <  SRR4302533.1798709/94‑1 (MQ=60)
                                       CCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGT                                                       >  SRR4302533.1510125/1‑94 (MQ=60)
                                       CCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGT                                                       <  SRR4302533.4936794/94‑1 (MQ=60)
                                        CGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTA                                                      >  SRR4302533.4869377/1‑94 (MQ=60)
                                         GCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTAT                                                     <  SRR4302533.6008058/94‑1 (MQ=60)
                                         GCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTAT                                                     >  SRR4302533.1428476/1‑94 (MQ=60)
                                         GCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTAT                                                     <  SRR4302533.98617/94‑1 (MQ=60)
                                          CCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATC                                                    >  SRR4302533.3686084/1‑94 (MQ=60)
                                          CCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATC                                                    >  SRR4302533.1681387/1‑94 (MQ=60)
                                          CCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATC                                                    <  SRR4302533.3445280/94‑1 (MQ=60)
                                          CCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATC                                                    >  SRR4302533.1157603/1‑94 (MQ=60)
                                           CATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCG                                                   >  SRR4302533.1374103/1‑94 (MQ=60)
                                           CATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCG                                                   >  SRR4302533.4910619/1‑94 (MQ=60)
                                           CATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCG                                                   <  SRR4302533.899830/94‑1 (MQ=60)
                                            ATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGT                                                  <  SRR4302533.252344/94‑1 (MQ=60)
                                              TCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTA                                                <  SRR4302533.3064742/94‑1 (MQ=60)
                                              TCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTA                                                >  SRR4302533.78723/1‑94 (MQ=60)
                                              TCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTA                                                <  SRR4302533.2046750/94‑1 (MQ=60)
                                               CGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAA                                               >  SRR4302533.2503997/1‑94 (MQ=60)
                                                GGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAAT                                              <  SRR4302533.4370563/94‑1 (MQ=60)
                                                 GTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATG                                             <  SRR4302533.5893128/94‑1 (MQ=60)
                                                  TTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGA                                            >  SRR4302533.5262945/1‑94 (MQ=60)
                                                   TCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGAT                                           <  SRR4302533.5038611/94‑1 (MQ=60)
                                                   TCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGAT                                           >  SRR4302533.5693011/1‑94 (MQ=60)
                                                     CCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATAT                                         >  SRR4302533.2592240/1‑94 (MQ=60)
                                                     CCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATAT                                         <  SRR4302533.4782604/94‑1 (MQ=60)
                                                      CTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATC                                        >  SRR4302533.5244144/1‑94 (MQ=60)
                                                      CTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATC                                        >  SRR4302533.1993693/1‑94 (MQ=60)
                                                      CTATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATC                                        >  SRR4302533.5892572/1‑94 (MQ=60)
                                                       TATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCG                                       <  SRR4302533.2993282/94‑1 (MQ=60)
                                                        ATATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGG                                      >  SRR4302533.212729/1‑94 (MQ=60)
                                                          ATCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCTATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGT                                    <  SRR4302533.4459976/94‑1 (MQ=60)
                                                           TCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTT                                   <  SRR4302533.1210407/94‑1 (MQ=60)
                                                           TCAATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTT                                   <  SRR4302533.6107278/94‑1 (MQ=60)
                                                            CAATACCCACCGGGGAAAAACGTTTGTCCTCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTG                                  >  SRR4302533.3148113/1‑94 (MQ=60)
                                                              ATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTT                                >  SRR4302533.4639771/1‑94 (MQ=60)
                                                              ATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTT                                >  SRR4302533.5545590/1‑94 (MQ=60)
                                                              ATACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTT                                <  SRR4302533.6319210/94‑1 (MQ=60)
                                                               TACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTG                               <  SRR4302533.3719422/94‑1 (MQ=60)
                                                               TACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTG                               <  SRR4302533.3730818/94‑1 (MQ=60)
                                                               TACCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTG                               >  SRR4302533.4359908/1‑94 (MQ=60)
                                                                 CCCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCA                             <  SRR4302533.3091429/94‑1 (MQ=60)
                                                                  CCACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCAC                            >  SRR4302533.4272798/1‑94 (MQ=60)
                                                                   CACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACA                           >  SRR4302533.3470444/1‑94 (MQ=60)
                                                                   CACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACA                           >  SRR4302533.4853662/1‑94 (MQ=60)
                                                                    ACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAG                          <  SRR4302533.3464660/94‑1 (MQ=60)
                                                                    ACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAG                          <  SRR4302533.94641/94‑1 (MQ=60)
                                                                    ACCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAG                          <  SRR4302533.1850544/94‑1 (MQ=60)
                                                                     CCGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGC                         <  SRR4302533.4486057/94‑1 (MQ=60)
                                                                      CGGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCC                        >  SRR4302533.4030344/1‑94 (MQ=60)
                                                                       GGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCT                       <  SRR4302533.4325860/94‑1 (MQ=60)
                                                                       GGGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCT                       <  SRR4302533.787913/94‑1 (MQ=60)
                                                                        GGGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTC                      <  SRR4302533.46196/94‑1 (MQ=60)
                                                                         GGAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCG                     <  SRR4302533.4777918/94‑1 (MQ=60)
                                                                          GAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGG                    <  SRR4302533.5886140/94‑1 (MQ=60)
                                                                          GAAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGG                    <  SRR4302533.1433077/94‑1 (MQ=60)
                                                                           AAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGC                   >  SRR4302533.4956205/1‑94 (MQ=60)
                                                                           AAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGC                   >  SRR4302533.4213190/1‑94 (MQ=60)
                                                                           AAAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGC                   >  SRR4302533.5545717/1‑94 (MQ=60)
                                                                            AAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCA                  >  SRR4302533.5384784/1‑94 (MQ=60)
                                                                            AAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCA                  <  SRR4302533.3562975/94‑1 (MQ=60)
                                                                            AAAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGGTGTTGCACAGCCTCGGCA                  >  SRR4302533.2508475/1‑94 (MQ=60)
                                                                             AAACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCAT                 <  SRR4302533.5482326/94‑1 (MQ=60)
                                                                              AACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATC                >  SRR4302533.3132383/1‑94 (MQ=60)
                                                                              AACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATC                >  SRR4302533.307939/1‑94 (MQ=60)
                                                                              AACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATC                >  SRR4302533.2092241/1‑94 (MQ=60)
                                                                               ACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCC               <  SRR4302533.5055919/94‑1 (MQ=60)
                                                                               ACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCC               <  SRR4302533.2503594/94‑1 (MQ=60)
                                                                               ACGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGATGTTGCACAGCCTCGGCATCC               >  SRR4302533.6115430/1‑94 (MQ=60)
                                                                                CGTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCG              >  SRR4302533.1073978/1‑94 (MQ=60)
                                                                                 GTTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGT             >  SRR4302533.3865801/1‑94 (MQ=60)
                                                                                  TTTGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTC            >  SRR4302533.2810872/1‑94 (MQ=60)
                                                                                    TGTCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTG          >  SRR4302533.281534/1‑94 (MQ=60)
                                                                                      TCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGT        >  SRR4302533.1585311/1‑94 (MQ=60)
                                                                                      TCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGT        <  SRR4302533.4534218/94‑1 (MQ=60)
                                                                                      TCATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGGTGTTGCACAGCCTCGGCATCCGTCTGGT        >  SRR4302533.1795999/1‑94 (MQ=60)
                                                                                       CATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTG       <  SRR4302533.165484/94‑1 (MQ=60)
                                                                                       CATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTG       >  SRR4302533.1698292/1‑94 (MQ=60)
                                                                                       CATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTG       >  SRR4302533.3554560/1‑94 (MQ=60)
                                                                                        ATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGG      <  SRR4302533.6012835/94‑1 (MQ=60)
                                                                                        ATCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGG      <  SRR4302533.2808908/94‑1 (MQ=60)
                                                                                         TCACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGT     <  SRR4302533.5728062/94‑1 (MQ=60)
                                                                                          CACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTG    >  SRR4302533.2616062/1‑94 (MQ=60)
                                                                                           ACGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGCTGTTGCACAGCCTCGGCATCCGTCTTGTGGTGG   >  SRR4302533.3312340/1‑94 (MQ=60)
                                                                                            CGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGT  >  SRR4302533.2865961/1‑94 (MQ=60)
                                                                                            |                                                                                             
CGTGGTAAAGGAACGTAAAACCGAGTTGGTCGAGGGATTCCGCCATTCGGTTCCCTATATCAATACCCACCGGGGAAAAACGTTTGTCATCATGCTCGGCGGTGAAGCCATTGAGCATGAGAATTTCTCCAGTATCGTTAATGATATCGGGTTGTTGCACAGCCTCGGCATCCGTCTGGTGGTGGT  >  NC_000913/2947263‑2947448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑